A general framework for propagule dispersal in mangroves

Dispersal allows species to shift their distributions in response to changing climate conditions. As a result, dispersal is considered a key process contributing to a species' long‐term persistence. For many passive dispersers, fluid dynamics of wind and water fuel these movements and different species have developed remarkable adaptations for utilizing this energy to reach and colonize suitable habitats. The seafaring propagules (fruits and seeds) of mangroves represent an excellent example of such passive dispersal. Mangroves are halophytic woody plants that grow in the intertidal zones along tropical and subtropical shorelines and produce hydrochorous propagules with high dispersal potential. This results in exceptionally large coastal ranges across vast expanses of ocean and allows species to shift geographically and track the conditions to which they are adapted. This is particularly relevant given the challenges presented by rapid sea‐level rise, higher frequency and intensity of storms, and changes in regional precipitation and temperature regimes. However, despite its importance, the underlying drivers of mangrove dispersal have typically been studied in isolation, and a conceptual synthesis of mangrove oceanic dispersal across spatial scales is lacking. Here, we review current knowledge on mangrove propagule dispersal across the various stages of the dispersal process. Using a general framework, we outline the mechanisms and ecological processes that are known to modulate the spatial patterns of mangrove dispersal. We show that important dispersal factors remain understudied and that adequate empirical data on the determinants of dispersal are missing for most mangrove species. This review particularly aims to provide a baseline for developing future research agendas and field campaigns, filling current knowledge gaps and increasing our understanding of the processes that shape global mangrove distributions.     

Preferential retention of the slowly evolving gene in pairs of duplicates in angiosperm genomes

Gene duplication provides raw material for functional innovation, but gene duplicability varies considerably. Previous studies have found widespread asymmetrical sequence evolution between paralogs. However, it remains unknown whether the rate of evolution among paralogs affects their propensity of being retained after another round of whole-genome duplication (WGD). In this study, we investigated gene groups that have experienced two successive WGDs to determine which of two older duplicates with different evolutionary rates was more likely to retain both younger duplicates. To uncouple the measurement of evolutionary rates from any assignment of duplicate or singleton status, we measured the evolutionary rates of singleton genes in out-lineages but classified these singleton genes according to whether they are retained or not in a crown group of species. We found that genes that retained younger duplicates in the crown group of genomes were more constrained prior to the younger duplication event than those that failed to leave duplicates. In addition, we also found that the retained clades have more genes in out-lineages. Subsequent analyses showed that genes in the retained clades were expressed more broadly and highly than genes in the singleton clades. We concluded that the set of repeatedly retained genes after two WGDs is biased toward slowly evolving genes in angiosperms, suggesting that the potential of genes for both functional conservation and divergence likely affects their propensity of being retained after WGD in angiosperms.     

锌胁迫对彩色豆马勃体内锌的分布和活性形态及其抗氧化系统的影响

彩色豆马勃Pisolithus tinctorius可广泛与林木建立外生菌根,其共生可促进植物生长,提高植物对重金属的耐受性。然而,关于彩色豆马勃对重金属锌(Zn)胁迫的生理响应还不完全清楚。本研究在纯培养条件下,测定了Zn胁迫对彩色豆马勃生物量、Zn的活性形态和亚细胞分布,超氧化物歧化酶(SOD)、过氧化氢酶(CAT)和过氧化物酶(POD)活性,谷胱甘肽(GSH)、抗坏血酸(AsA)和黑色素含量的影响。结果表明,Zn胁迫抑制了彩色豆马勃的生长,在浓度为563 μmol/L时,达到半数最大抑制浓度(IC₅₀),在浓度为600 μmol/L时,生物量降低42.6%。Zn在彩色豆马勃中以活性较低的草酸盐、难溶于水的磷酸盐、果胶酸盐以及与蛋白质呈结合态或吸着态的形式为主。Zn胁迫显著提高了彩色豆马勃菌丝中CAT、POD和SOD活性,增加了GSH和黑色素含量,但对AsA的含量没有显著影响。本研究表明,彩色豆马勃主要通过调节Zn的分布及抗氧化系统,增加黑色素含量,增强对Zn的耐受性,为外生菌根真菌修复重金属污染土壤提供了理论支持。     

黑曲霉木质纤维素降解酶基因的可变剪接分析及验证

黑曲霉Aspergillus niger因能够产生大量的木质纤维素降解酶而在木质纤维素资源利用中发挥重要作用。目前,有关黑曲霉基因组中与木质纤维素降解相关的基因是否存在可变剪接的情况尚不清楚。本研究以黑曲霉CBS513.88菌株为研究对象,采用rMATS和ABLas两种方法对黑曲霉在葡萄糖为唯一碳源(G组)和小麦秸秆为唯一碳源(WS组)下的56个木质纤维素降解酶基因的可变剪接事件进行分析,并通过RT-PCR扩增和内含子特异性扩增对3个典型基因的可变剪接体进行了验证。结果表明,ABLas可变剪接分析算法相较于rMATS分析算法更为准确,ABLas分析算法显示G组和WS组共有21个木质纤维素降解酶基因出现了可变剪接,可变剪接类型以内含子保留(IR)为主,占所有可变剪接事件的82.85%。另外,G组和WS组发生可变剪接的木质纤维素降解酶基因也有所不同：G组发生可变剪接的基因为13个,WS组发生可变剪接的基因为14个,两组都发生可变剪接的基因为6个,这表明黑曲霉木质纤维素降解酶基因的可变剪接在不同生长条件下存在差异,另一方面,黑曲霉中众多可变剪接体的存在也为开发新型的木质纤维素降解酶资源提供基础。     

The role of biofouling development in the loss of seed mussels in aquaculture

The efficient seeding of juvenile mussels is critical to the sustainability and profitability of mussel aquaculture. However, seeding mussels is highly inefficient, with many juveniles being lost in the following few months. One possible cause of these losses could be the development of biofouling assemblages. Therefore, the relationships between biofouling accumulation and losses of juveniles were assessed. Losses of juvenile mussels were initially high (42.9–49.1% over approximately one to two weeks), with lower rates of loss over the following four to five months. Biofouling development followed a successional pattern beginning with colonisation by amphipods, subsequent establishment of macroalgae, and the formation of an assemblage dominated by mussels and sessile invertebrates. However, biofouling development did not play a major role in the loss of juveniles. Rather, large-scale losses of mussels occurred shortly after seeding when biofouling was scant, suggesting alternative causes of loss were in operation.     

Assessing the performance of pea and lentil at different seeding densities as trap crops for the management of wireworms in spring wheat

Wireworms, the larvae of click beetles (Elateridae), are difficult to manage due to their habitats and behaviour. Wireworms pose a major threat to the wheat crop in the north‐western USA. Seed treatment with neonicotinoids, biological control management and some cultural controls are recommended to manage these pests. Trap cropping is an emerging way to manage wireworms. In strawberry and potato crops, trap cropping has been found effective at attracting wireworms away from the principal crop. An earlier study in the Golden Triangle area of Montana found that pea and lentil could be effective trap crops for managing wireworms in spring wheat. In the present study, experiments were conducted at two locations. The effectiveness of peas and lentils as trap crops with wheat at different seeding densities was assessed [pea at 0, 4, 8, 16 seeds/sq.ft. or 0, 43, 86, 172 seeds/sq.m.; lentil at 0, 6, 12, 18 OR 0, 65, 130, 194 seeds/sq.m.; both with wheat at 0, 11, 22, or 28 seeds/sq.ft. or 0, 120, 230, 300 seeds/sq.m.] in a randomized design where all three crops were intercropped. Both trap crops were found to be effective in protecting wheat at standard seeding rates of 8 seeds/sq.ft. for pea and 12 seeds/sq.ft. for lentils. At these seeding rates, higher numbers of wireworms were found to be attracted to the trap crop, resulting in higher yield (7%–10%) of the associated spring wheat plant stands at 22 seeds/sq.ft. To develop an effective trap crop strategy, the pea–wheat and lentil–wheat spatial patterns that are possible need to be assessed in further field trials. Proper design and evaluation of the cost–benefit ratio of pea and lentil as trap crops are likely to produce good results for wheat crops in Montana.     

Uterine and eggshell structure and histochemistry in a lizard with prolonged uterine egg retention (Lacertilia,Scincidae, Saiphos)

The eggshell of lizards is a complex structure composed of organic and inorganic molecules secreted by the oviduct, which protects the embryo by providing a barrier to the external environment and also allows the exchange of respiratory gases and water for life support. Calcium deposited on the surface of the eggshell provides an important nutrient source for the embryo. Variation in physical conditions encountered by eggs results in a tradeoff among these functions and influences eggshell structure. Evolution of prolonged uterine egg retention results in a significant change in the incubation environment, notably reduction in efficiency of gas exchange, and selection should favor a concomitant reduction in eggshell thickness. This model is supported by studies that demonstrate an inverse correlation between eggshell thickness and length of uterine egg retention. One mechanism leading to thinning of the eggshell is reduction in size of uterine shell glands. Saiphos equalis is an Australian scincid lizard with an unusual pattern of geographic variation in reproductive mode. All populations retain eggs in the uterus beyond the embryonic stage at oviposition typical for lizards, and some are viviparous. We compared structure and histochemistry of the uterus and eggshell of two populations of S. equalis, prolonged egg retention, and viviparous to test the hypotheses: 1) eggshell thickness is inversely correlated with length of egg retention and 2) eggshell thickness is positively correlated with size of shell glands. We found support for the first hypothesis but also found that eggshells of both populations are surprisingly thick compared with other lizards. Our histochemical data support prior conclusions that uterine shell glands are the source of protein fiber matrix of the eggshell, but we did not find a correlation between size of shell glands and eggshell thickness. Eggshell thickness is likely determined by density of uterine shell glands in this species. J. Morphol., 2010. © 2010 Wiley‐Liss, Inc.     

Identification and in silico prediction of metabolites of tebufenozide derivatives by major human cytochrome P450 isoforms

Cytochrome P450 (CYP) enzymes constitute a superfamily of heme-containing monooxygenases. CYPs are involved in the metabolism of many chemicals such as drugs and agrochemicals. Therefore, examining the metabolic reactions by each CYP isoform is important to elucidate their substrate recognition mechanisms. The clarification of these mechanisms may be useful not only for the development of new drugs and agrochemicals, but also for risk assessment of chemicals. In our previous study, we identified the metabolites of tebufenozide, an insect growth regulator, formed by two human CYP isoforms: CYP3A4 and CYP2C19. The accessibility of each site of tebufenozide to the reaction center of CYP enzymes and the susceptibility of each hydrogen atom for metabolism by CYP enzymes were evaluated by a docking simulation and hydrogen atom abstraction energy estimation at the density functional theory level, respectively. In this study, the same in silico prediction method was applied to the metabolites of tebufenozide derivatives by major human CYPs (CYP1A2, 2C9, 2C19, 2D6, and 3A4). In addition, the production rate of the metabolites by CYP3A4 was quantitively analyzed by frequency based on docking simulation and hydrogen atom abstraction energy using the classical QSAR approach. Then, the obtained QSAR model was applied to predict the sites of metabolism and the metabolite production order by each CYP isoform.     

Retention and Degradation of N-Glycoproteins in the Rough Endoplasmic Reticulum

Recent studies have shown that newly synthesized proteins and glycoproteins are submitted to a quality control mechanism in the rough endoplasmic reticulum (ER). In this report we present two models: One model will illustrate a transient retention in rough ER leading to a further degradation of glycoproteins in the cytosol, (soluble alkaline phosphatase expressed in Man-P-Dol deficient CHO cells lines). The second model will illustrate a strict retention of glycoproteins in rough ER without degradation nor recycling through the Golgi (E1, E2 glycoproteins of Hepatitis C virus in stably transfected UHCV-11.4 cells and in infected Hep G2 cells).In both cases, oligomannoside structures are markers of these phenomena, either as free soluble released oligomannosides in the case of degradation, or as N-linked oligomannosides for strict retention in rough ER.     

Soil Organic Carbon and Water Retention after Conversion of Grasslands to Pine Plantations in the Ecuadorian Andes

Tree plantations in the high elevations of the tropics constitute a growing land use, but their effect on ecosystem processes and services is not well known. We examined changes in soil organic carbon (C) and water retention in a chronosequence of Pinus radiata stands planted in páramo grasslands in Cotopaxi province, Ecuador. Water retention at 10, 33, and 1,500 kPa declined with stand age, with soils in the oldest pine stands retaining 39%, 55%, and 63% less water than grassland soils at the three pressures tested. Soil organic C in the 0–10-cm depth also declined with stand age, from 5.0 kg m^–2 in grasslands to 3.5 kg m^–2 in 20–25-year-old pine stands (P < 0.001); at greater depth in the A horizon, C contents decreased from 2.8 to 1.2 kg m^–2 (P = 0.047). There were no significant differences among age classes in the AC and C horizons (P = 0.15 and P = 0.34, respectively), where little or no weathering of the primary material has occurred. Inputs of C may be affected by the significantly higher carbon–nitrogen (C:N) ratio of the litter under older pine stands (P = 0.005), whereas outputs are influenced by substrate quality as well as soil environmental factors. Soil ratios at the 0–10 cm depth were significantly higher in grasslands and young pine stands (P < 0.001), whereas carbon–phosphorous (C:P) ratios at 0–10-cm depth followed a similar but not significant trend. However, there was no significant difference in short-term decomposition rates (P = 0.60) when the soils were incubated under uniform temperature and moisture conditions. In páramo ecosystems, where high soil moisture plays an important role in retarding decomposition and driving high C storage, the loss of water retention after afforestation may be the dominant factor in C loss. These results suggest that soil C buildup and water retention respond rapidly to changes in biota and need to be assessed with regard to implications for C sequestration and watershed management.