Regional and global elevational patterns of microbial species richness and evenness

Although elevational gradients in microbial biodiversity have attracted increasing attention recently, the generality in the patterns and underlying mechanisms are still poorly resolved. Further, previous studies focused mostly on species richness, while left understudied evenness, another important aspect of biodiversity. Here, we studied the elevational patterns in species richness and evenness of stream biofilm bacteria and diatoms in six mountains in Asia and Europe. We also reviewed published results for elevational richness patterns for soil and stream microbes in a literature analysis. Our results revealed that even within the same ecosystem type (that is, stream) or geographical region, bacteria and diatoms showed contrasting patterns in diversity. Stream microbes, including present stream data, tend to show significantly increasing or decreasing elevational patterns in richness, contrasting the findings for soil microbes that typically showed nonsignificant or significantly decreasing patterns. In all six mountains for bacteria and in four mountains for diatoms, species richness and evenness were positively correlated. The variation in bacteria and diatom richness and evenness were substantially explained by anthropogenic driven factors, such as total phosphorus (TP). However, diatom richness and evenness were also related to different main drivers as richness was mostly related to pH, while evenness was most explained by TP. Our results highlight the lack of consistent elevational biodiversity patterns of microbes and further indicate that the two facets of biodiversity may respond differently to environmental gradients.     

国外松衰退病原因的研究

对安徽省国外松大面积衰退和枯死原因的调查研究表明,造成这种衰退和枯死的现象是多方面因素共同作用的结果,是一种林木衰退病,该衰退病的发生原因：1）诱发因素：温度年较差较大、年降雨量分布不均镁、土壤粘重板结或容重过大、地势低汪积水、土壤瘠薄、林分密度过大;2）激化因素：干旱严重重复发生、割脂过早过度、霜冻、食叶害虫等害虫危害;松针褐斑病等病害侵害;3）促进因素：松枯梢病菌、根腐病菌、立木腐配病菌、天牛、小蠹虫等害虫危害。     

Influence of cyclin D1 splicing variants expression on breast cancer chemoresistance via CDK4/CyclinD1-pRB-E2F1 pathway

Cyclin D1 (CCND1), a mediator of cell cycle control, has a G870A polymorphism which results in the formation of two splicing variants: full-length CCND1 (CCND1a) and C-terminally truncated CCND1 species (CCND1b). However, the role of CCND1a and CCND1b variants in cancer chemoresistance remains unknown. Therefore, this study aimed to explore the molecular mechanism of alternative splicing of CCND1 in breast cancer (BC) chemoresistance. To address the contribution of G870A polymorphism to the production of CCND1 variants in BC chemoresistance, we sequenced the G870A polymorphism and analysed the expressions of CCND1a and CCND1b in MCF-7 and MCF-7/ADM cells. In comparison with MCF-7 cells, MCF-7/ADM cells with the A allele could enhance alternative splicing with the increase of SC-35, upregulate the ratio of CCND1b/a at both mRNA and protein levels, and activate the CDK4/CyclinD1-pRB-E2F1 pathway. Furthermore, CCND1b expression and the downstream signalling pathway were analysed through Western blotting and cell cycle in MCF-7/ADM cells with knockdown of CCND1b. Knockdown of CCND1b downregulated the ratio of CCND1b/a, demoted cell proliferation, decelerated cell cycle progression, inhibited the CDK4/CyclinD1-pRB-E2F1 pathway and thereby decreased the chemoresistance of MCF-7/ADM cells. Finally, CCND1 G870A polymorphism, the alternative splicing of CCDN1 was detected through Sequenom Mass ARRAY platform, Sanger sequencing, semi-quantitative RT-PCR, Western blotting and immunohistochemistry in clinical BC specimens. The increase of the ratio of CCND1b/a caused by G870A polymorphism was involved in BC chemoresistance. Thus, these findings revealed that CCND1b/a ratio caused by the polymorphism is involved in BC chemoresistance via CDK4/CyclinD1-pRB-E2F1 pathway.     

Antifungal property of dihydrodehydrodiconiferyl alcohol 9'-O-β-d-glucoside and its pore-forming action in plasma membrane of Candida albicans

The aims of this study were to investigate the antifungal activity as a bioactive property of dihydrodehydrodiconiferyl alcohol 9'-O-β-d-glucoside (DDDC9G) and the mode of action(s) involved in its effect. Antifungal susceptibility testing showed that DDDC9G possessed potent antifungal activities toward various fungal strains with almost no hemolytic effect. To understand the antifungal mechanism(s) of DDDC9G, we conducted the following experiments in this study using Candida albicans. Fluorescence experiments using the probes, 1, 6-diphenyl-1, 3, 5-hexatriene (DPH) and propidium iodide suggested that DDDC9G perturbed the fungal plasma membrane. Consecutively, the analysis of the transmembrane electrical potential (ΔΨ) with 3, 3'-dipropylthiadicarbocyanine iodide [DiSC(3)(5)] and bis-(1, 3-dibutylbarbituric acid) trimethine oxonol [DiBAC(4)(3)] indicated that DDDC9G induced membrane-depolarization. Furthermore, model membrane studies were performed with rhodamine-labeled giant unilamellar vesicles (GUVs), calcein encapsulating large unilamellar vesicles (LUVs), and FITC-dextran (FD) loaded LUVs. These results demonstrated that the antifungal effects of DDDC9G upon the fungal plasma membrane were through the formation of pores with the radii between 0.74nm and 1.4nm. Finally, in three dimensional (3D) flow cytometric contour plots, a reduced cell size was observed as a result of osmolarity changes from DDDC9G-induced structural and functional membrane damages. Therefore, the present study suggests that DDDC9G exerts its antifungal effect by damaging the membrane through pore formation in the fungal plasma membrane.     

Low Taxon Richness of Bacterioplankton in High-Altitude Lakes of the Eastern Tibetan Plateau,with a Predominance of Bacteroidetes and Synechococcus spp.

Plankton samples were collected from six remote freshwater and saline lakes located at altitudes of 3,204 to 4,718 m and 1,000 km apart within an area of ca. 1 million km² on the eastern Tibetan Plateau to comparatively assess how environmental factors influence the diversity of bacterial communities in high-altitude lakes. The composition of the bacterioplankton was investigated by analysis of large clone libraries of 16S rRNA genes. Comparison of bacterioplankton diversities estimated for the six Tibetan lakes with reference data previously published for lakes located at lower altitudes indicated relatively low taxon richness in the Tibetan lakes. The estimated average taxon richness in the four Tibetan freshwater lakes was only one-fifth of the average taxon richness estimated for seven low-altitude reference lakes. This cannot be explained by low coverage of communities in the Tibetan lakes by the established libraries or by differences in habitat size. Furthermore, a comparison of the taxonomic compositions of bacterioplankton across the six Tibetan lakes revealed low overlap between their community compositions. About 70.9% of the operational taxonomic units (99% similarity) were specific to single lakes, and a relatively high percentage (11%) of sequences were <95% similar to publicly deposited sequences of cultured or uncultured bacteria. This beta diversity was explained by differences in salinity between lakes rather than by distance effects. Another characteristic of the investigated lakes was the predominance of Cyanobacteria (Synechococcus) and Bacteroidetes. These features of bacterioplankton diversity may reflect specific adaptation of various lineages to the environmental conditions in these high-altitude lakes.Bacterioplankton is a major component of aquatic ecosystems (13). The advent of molecular techniques during the past 2 decades has advanced our knowledge of the diversity and ecology of bacterioplankton in various aquatic habitats (7, 14, 19, 20, 39, 63, 64, 67). Based on comparative analyses of bacterial 16S rRNA sequences obtained from diverse freshwater habitats, typical freshwater bacterial clusters have been proposed (67), and this list of clusters was subsequently expanded (e.g., 2, 15, 23, 57). Many of these freshwater bacterial clusters appeared to be widely distributed in lakes with different ecological characteristics and in different geographic regions (34, 38, 44, 57, 67). However, most of the knowledge about freshwater bacterioplankton diversity originated from investigations of low-altitude lake systems. Differences in elevation result in pronounced differences in environmental conditions in lakes (59). Lakes at high altitudes are often characterized by oligotrophy, low temperature, low productivity, simple food web structure, and strong UV radiation in surface water layers. All these factors have been shown to strongly influence bacterial community composition and bacterial taxon richness (e.g., 25, 32, 33, 35, 48, 58, 60). These in situ environmental conditions, which change with the elevation, may result in a change in the bacterioplankton community and taxon richness at high elevations. Since lake ecosystems at high altitude are quite sensitive to the impacts of climate change, i.e., global warming, and these rarely explored lakes may harbor new microbial species, our knowledge of the bacterial diversity in high-altitude lakes is also crucial to species protection and ecosystem conservation.In this study, sequence analysis of large 16S rRNA gene clone libraries was applied in order to obtain deep insights into the phylogenetic diversity of bacterioplankton in six permanent high altitude lakes located ca. 1,000 km apart within an area of ca. 1 million km² on the eastern Tibetan Plateau (Fig. ​(Fig.1).1). We selected these lakes because (i) they are permanent lakes that have existed for thousands of years and lack direct anthropogenic influences (66); (ii) they posses typical characteristics of high-altitude lakes, like low nutrient concentration, low temperature, low primary productivity, and transparent water; (iii) they are located distant from each other in three different regions of the plateau; and (iv) they cover gradients in salinity and chemical composition that are typical of the ecologically broad spectrum of Tibetan lakes (62). By performing interlake comparisons across these Tibetan lakes and comparisons with the available information on bacterioplankton diversity in low-altitude lakes, we aimed to (i) evaluate the taxon richness of bacterioplankton in lakes in relation to the indirect influence of elevation via the environmental conditions, (ii) test the importance of spatial and local environmental factors for bacterioplankton community composition (BCC) in these remote high-altitude lakes, and (iii) characterize the phylogenetic diversity of bacterioplankton and assess the community features in these remote ecosystems.Open in a separate windowFIG. 1.Map of central Tibet indicating the locations of the investigated lakes. 1, Lake Qinghai; 2, Lake Zhaling; 3, Lake Tuosuhai; 4, Lake E''ling; 5, Lake Xinxinhai; 6, Lake Namucuo. (Adapted from reference 61a, with kind permission from Springer Science+Business Media.)     

Abundance and community composition of ammonia-oxidizing archaea and bacteria in two different zones of Lake Taihu

The abundance and community composition of ammonia-oxidizing archaea and ammonia-oxidizing bacteria in the surface sediments of 2 different zones (Meiliang Bay and Eastern Lake Taihu) of Lake Taihu were investigated using real-time quantitative polymerase chain reaction and clone libraries. The amoA gene copy numbers in the surface sediment of Meiliang Bay ranged from 4.91?× 10(5) to 8.65?× 10(6) copies/g dry sediment for the archaeal amoA gene and from 3.74?× 10(4) to 3.86?× 10(5) copies/g dry sediment for the bacterial amoA gene, which were significantly higher than those of Eastern Lake Taihu (P?< 0.05). Concentrations of ammonia (NH(4)(+)), total nitrogen, organic matter, and pH of the sediments exhibited significantly negative correlations with the abundance of ammonia-oxidizing archaea or ammonia-oxidizing bacteria (P?< 0.05 or P?< 0.01, respectively). The potential nitrification rates show remarkable correlations with the copy numbers of the archaeal amoA gene. Diversity of the archaeal amoA gene in Eastern Lake Taihu was significantly higher than that of Meiliang Bay, whereas the bacterial amoA gene diversity was comparable for the 2 lake zones. The data obtained in this study would be useful to elucidate the role of ammonia-oxidizing archaea and ammonia-oxidizing bacteria in the nitrogen cycle of freshwater ecosystems.     

Different apoptotic effects of wogonin via induction of H(2)O(2) generation and Ca(2+) overload in malignant hepatoma and normal hepatic cells

Wogonin, a major active constituent of Scutellaria baicalensis, possesses potent anticancer activities both in vivo and in vitro. This paper describes the different apoptotic effects of wogonin in HepG2 and L02 cells and the possible mechanism for the differences. Through DAPI staining, Annexin-V/PI double-staining assay, JC-1 detection and the expressions of the key apoptotic proteins, we find that wogonin prefers to induce apoptosis in HepG2 cells through the mitochondrial pathway, while has much less effects on L02 cells. Moreover, overexpression of Bcl-2 can block wogonin-induced apoptosis in HepG2 cells. To illustrate the specific selective mechanism of wogonin in apoptosis induction, H(2)O(2), (·)O(2)(-) and Ca(2+) are measured by 2',7'-dichlorfluorescein-diacetate, dihydroethidium and Flou-3 AM assay, respectively. The results show that the different apoptotic effects of wogonin in HepG2 and L02 cells are due to the different regulations to the redox balance of reactive oxygen species and the Ca(2+) release from endoplasmic reticulum. IP(3)R-sensitive Ca(2+) channels are the key targets of the wogonin-increased H(2)O(2). Besides, the activation of PLCγ1 plays as a bridge between H(2)O(2) signal molecules and Ca(2+) release. Taken together, wogonin preferentially kills hepatoma cells by H(2)O(2)-dependent apoptosis triggered by Ca(2+) overload. The results reveal that wogonin is a competitive anticancer drug candidate for the malignant hepatoma therapy.     

Spectacular modification of Gambogic acid on microwave irradiation in methanol: Isolation and structure identification of two products with potent anti-tumor activity

Treatment of gambogic acid with methanol in acidic condition under microwave irradiation led to the formation of two new products bearing spectacular A ring systems which were different from reported Garcinia natural products. The chemical structures of these two compounds were elucidated by extensive NMR and MS spectroscopic analysis as well as crystallographic study. Both of the two products could significantly inhibit the growth of various tumor cell lines in vitro with IC₅₀ values at μM level through apoptotic pathway.