Sinistral snail shells in the sea: developmental causes and consequences

The paucity of sinistral (left-coiling) relative to dextral (right-coiling) species of gastropods in the marine realm is an enigma. In Conus , one of the most diverse marine animal genera, sinistral shell coiling has evolved as a species-wide character only once. Fossils of this species, Conus adversarius , are found in Upper Pliocene and lowermost Pleistocene deposits in the southeastern USA. Conus adversarius had nonplanktonic larval development; this may have been a critical factor for the early establishment of the species, as well as sinistral marine species in other clades. Notably, most specimens of aberrantly sinistral modern Conus are derived from typically dextral species that have nonplanktonic development. If C. adversarius was reproductively isolated from dextral conspecifics, then this species may provide an example of nearly instantaneous sympatric speciation in the fossil record. Furthermore, the common and widespread – while geologically short-lived – fossil shells of C. adversarius show large amounts of variability in form and this variation may be related, at least in part, to a pleiotropic effect associated with the reversed coiling direction of this species.     

Collecting isolated microvertebrate fossils

A review is presented of the techniques currently used in the collection and separation of isolated teeth and bones of fossil vertebrates. These involve the collection and disaggregation of the sediment, its sieving, concentration and sorting of the residue, and curation of the fossils obtained.     

Editor's choice: AnABlast: a new in silico strategy for the genome-wide search of novel genes and fossil regions

Genome annotation, assisted by computer programs, is one of the great advances in modern biology. Nevertheless, the in silico identification of small and complex coding sequences is still challenging. We observed that amino acid sequences inferred from coding—but rarely from non-coding—DNA sequences accumulated alignments in low-stringency BLAST searches, suggesting that this alignments accumulation could be used to highlight coding regions in sequenced DNA. To investigate this possibility, we developed a computer program (AnABlast) that generates profiles of accumulated alignments in query amino acid sequences using a low-stringency BLAST strategy. To validate this approach, all six-frame translations of DNA sequences between every two annotated exons of the fission yeast genome were analysed with AnABlast. AnABlast-generated profiles identified three new copies of known genes, and four new genes supported by experimental evidence. New pseudogenes, ancestral carboxyl- and amino-terminal subtractions, complex gene rearrangements, and ancient fragments of mitDNA and of bacterial origin, were also inferred. Thus, this novel in silico approach provides a powerful tool to uncover new genes, as well as fossil-coding sequences, thus providing insight into the evolutionary history of annotated genomes.     

Caedichnus,a New Ichnogenus Representing Predatory Attack on the Gastropod Shell Aperture

Predatory traces, in which the tracemaker has damaged the prey animal's skeleton to kill and consume it, have a deep fossil history and have received much scientific attention. Several types of predatory traces have been assigned to ichnotaxa, but one of the most studied predatory traces, the wedge-shaped excision produced as a result of attacks mainly by crustaceans on the apertures of gastropod shells, has yet to be described as an ichnotaxon. We propose the ichnogenus Caedichnus to describe the shell damage produced by aperture peeling behavior. Caedichnus is produced by predators that are unable to crush their prey's shells outright. Depending on the predator's peeling ability and the prey's withdrawal depth within the shell, the trace can extend through several whorls of the shell. Aperture peel attacks may fail, allowing such damage to be repaired by surviving gastropods. Thus, the types of attacks that produce Caedichnus may exert selective pressure on prey to evolve better-defended shells (in the case of gastropods) or to inhabit better-defended shells (in the case of hermit crabs). The identification of these trace fossils will enhance our understanding of how predation influences the morphological, and even behavioral, evolution of prey organisms.     

Thorezia vezerensisgen. et sp. nov., a new seed plant with multiovulate cupules from the Late Devonian of Belgium

The multiovulate cupule of a new spermatophyte, Thorezia vezerensisgen. et sp. nov., is described from the Late Devonian aged sediments from Trooz Quarry in Belgium. In gross morphology, it conforms to the Moresnetia morphotype and has a cupule that is composed of four independent quarters that each dichotomises three times. Each cupule quarter contains one single ovoid preovule with a long pedicel and an integument that has small apical teeth surrounding a rudimentary micropyle. Morphological variability in the materials examined is interpreted as being related to preovule maturity, and from this a good understanding of the ontogenetic development from preceding dispersal has been developed. Up to now, 17 spermatophyte species have been described, 11 of which come from eastern Laurussia. This diversity in eastern Laurussia contrasts strongly with the low diversity characterizing contemporaneous floras from other phytogeographical areas. We suggest here that the arid climatic conditions prevailing in eastern Laurussia favoured the development of diverse spermatophyte communities and contributed to reduced diversity and abundance of contemporaneous free-sporing plant diversity.     

Congruent phylogenetic and fossil signatures of mammalian diversification dynamics driven by Tertiary abiotic change

Computational methods for estimating diversification rates from extant species phylogenetic trees have become abundant in evolutionary research. However, little evidence exists about how their outcome compares to a complementary and direct source of information: the fossil record. Furthermore, there is virtually no direct test for the congruence of evolutionary rates based on these two sources. This task is only achievable in clades with both a well‐known fossil record and a complete phylogenetic tree. Here, we compare the evolutionary rates of ruminant mammals as estimated from their vast paleontological record—over 1200 species spanning 50 myr—and their living‐species phylogeny. Significantly, our results revealed that the ruminant's fossil record and phylogeny reflect congruent evolutionary processes. The concordance is especially strong for the last 25 myr, when living groups became a dominant part of ruminant diversity. We found empirical support for previous hypotheses based on simulations and neontological data: The pattern captured by the tree depends on how clade specific the processes are and which clades are involved. Also, we report fossil evidence for a postradiation speciation slowdown coupled with constant, moderate extinction in the Miocene. The recent deceleration in phylogenetic rates is connected to rapid extinction triggered by recent climatic fluctuations.     

The occurrence of the fossil genus Graminidites in the Maastrichtian Scollard Formation,Alberta, Canada,and its palaeoecological and palaeogeographical significance

Fossil grass pollen is common in Late Tertiary sediments and its rare occurrence in the Early Tertiary led to the belief that its presence is restricted to Tertiary sediments. A literature survey shows that rare occurrences of Graminidites spp. have been reported from Campanian–Maastrichtian strata worldwide. All reported Graminidites spp. have been studied by transmitted light microscopes, which are inadequate to resolve their fine exine sculpture. Graminidites sp. occurs in the Maastrichtian Scollard Formation of Alberta, Canada, and is studied here with light microscopy and scanning electron microscopy. A new species, G. ulkapites, occurs at the initiation of a temperate climate in the area. It occurs in post‐dinosaurian beds locally but in pre‐Cretaceous–Tertiary boundary strata, which implies that grasses could also be present in dinosaur inhabitations. Grass phytoliths, reported from dinosaurian coprolites from the Maastrichtian Deccan Intertrappean sediments of India, indicate that grasses were ingested by dinosaurs even if not included in the dinosaurian diet. A plot of worldwide Senonian occurrences of Graminidites spp. on a late Maastrichtian palaeogeographic map demonstrates that the data are inadequate to reveal the place of origin or migratory pattern. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, 167 , 235–248.     

中国异翅目化石研究现状

自1928年秉志命名了早白垩世山东莱阳盆地莱阳组的我国第1种异翅目化石昆虫(莱阳中蝽Mesolygaeus laiyangensis)以来,近30篇关于中国异翅目化石昆虫分类论著被发表,共记述我国异翅目化石昆虫22科85种.由于中国该类群化石没有被系统采集与研究,其中一些分类阶元的可靠性存在一定的问题.显然,目前对中国该类群化石昆虫的了解相当有限;大量的工作,甚至是最基础的分类研究亟待开展.     

Nitrogen Cycles: Past, Present, and Future

This paper contrasts the natural and anthropogenic controls on the conversion of unreactive N₂ to more reactive forms of nitrogen (Nr). A variety of data sets are used to construct global N budgets for 1860 and the early 1990s and to make projections for the global N budget in 2050. Regional N budgets for Asia, North America, and other major regions for the early 1990s, as well as the marine N budget, are presented to Highlight the dominant fluxes of nitrogen in each region. Important findings are that human activities increasingly dominate the N budget at the global and at most regional scales, the terrestrial and open ocean N budgets are essentially disconnected, and the fixed forms of N are accumulating in most environmental reservoirs. The largest uncertainties in our understanding of the N budget at most scales are the rates of natural biological nitrogen fixation, the amount of Nr storage in most environmental reservoirs, and the production rates of N₂ by denitrification.     

Gondwanan radiation of the Southern Hemisphere crayfishes (Decapoda: Parastacidae): evidence from fossils and molecules

Aim The sequential break‐up of Gondwana is thought to be a dominant process in the establishment of shared biota across landmasses of the Southern Hemisphere. Yet similar distributions are shared by taxa whose radiations clearly post‐date the Gondwanan break‐up. Thus, determining the contribution of vicariance versus dispersal to seemingly Gondwanan biota is complex. The southern freshwater crayfishes (family Parastacidae) are distributed on Australia and New Guinea, South America, Madagascar and New Zealand and are unlikely to have dispersed via oceans, owing to strict freshwater limitations. We test the hypotheses that the break‐up of Gondwana has led to (1) a predominately east–west (((Australia, New Zealand: 80 Ma) Madagascar: 160–121 Ma) South America: 165–140 Ma), or (2) a southern (((Australia, South America: 52–35 Ma) New Zealand: 80 Ma) Madagascar: 160–121 Ma) pattern for parastacid crayfish. Further, we examine the evidence for a complete drowning of New Zealand and subsequent colonization by freshwater crayfish. Location Southern Hemisphere. Methods The evolutionary relationships among the 15 genera of Parastacidae were reconstructed using mitochondrial [16S, cytochrome c oxidase subunit I (COI)] and nuclear (18S, 28S) sequence data and maximum likelihood and Bayesian methods of phylogenetic reconstruction. A Bayesian (multidivtime ) molecular dating method using six fossil calibrations and phylogenetic inference was used to estimate divergence time among crayfish clades on Gondwanan landmasses. Results The South American crayfish are monophyletic and a sister group to all other southern crayfish. Australian crayfish are not monophyletic, with two Tasmanian genera, Spinastacoides and Ombrastacoides, forming a clade with New Zealand and Malagasy crayfish (both monophyletic). Divergence of crayfish among southern landmasses is estimated to have occurred around the Late Jurassic to Early Cretaceous (109–178 Ma). Main conclusions The estimated phylogenetic relationships and time of divergence among the Southern Hemisphere crayfishes were consistent with an east–west pattern of Gondwanan divergence. The divergence between Australia and New Zealand (109–160 Ma) pre‐dated the rifting at around 80 Ma, suggesting that these lineages were established prior to the break‐up. Owing to the age of the New Zealand crayfish, we reject the hypothesis that there was a complete drowning of New Zealand crayfish habitat.