Interaction between a geminivirus replication protein and the plant sumoylation system

Geminiviruses are small DNA viruses that replicate in nuclei of infected plant cells after accumulation of host replication machinery. Tomato golden mosaic virus (TGMV) and Tomato yellow leaf curl Sardinia virus (TYLCSV) encode a protein, RepAC1 (or Rep), that is essential for viral replication. Rep/RepAC1 is an oligomeric protein that binds to double-stranded DNA, catalyzes cleavage and ligation of single-stranded DNA, and is sufficient for host induction. It also interacts with several host proteins, including the cell cycle regulator, retinoblastoma, and essential components of the cell DNA replication machinery, like proliferating nuclear cell antigen (PCNA) and RFC-1. To identify other cellular proteins that interact with Rep/RepAC1 protein, a Nicotiana benthamiana cDNA library was screened with a yeast two-hybrid assay. The host cell sumoylation enzyme, NbSCE1 (N. benthamiana SUMO-conjugating enzyme, homolog to Saccharomyces cerevisiae UBC9), was found to interact specifically with RepAC1. Mapping studies localized the interaction to the N-terminal half of RepAC1. Effects on geminivirus replication were observed in transgenic plants with altered levels of SUMO, the substrate for UBC9.     

Mechanistic targeting of advanced glycation end-products in age-related diseases

Glycative stress, caused by the accumulation of cytotoxic and irreversibly-formed sugar-derived advanced glycation end-products (AGEs), contributes to morbidity associated with aging, age-related diseases, and metabolic diseases. In this review, we summarize pathways leading to formation of AGEs, largely from sugars and glycolytic intermediates, and discuss detoxification of AGE precursors, including the glyoxalase system and DJ-1/Park7 deglycase. Disease pathogenesis downstream of AGE accumulation can be cell autonomous due to aggregation of glycated proteins and impaired protein function, which occurs in ocular cataracts. Extracellular AGEs also activate RAGE signaling, leading to oxidative stress, inflammation, and leukostasis in diabetic complications such as diabetic retinopathy. Pharmaceutical agents have been tested in animal models and clinically to diminish glycative burden. We summarize existing strategies and point out several new directions to diminish glycative stress including: plant-derived polyphenols as AGE inhibitors and glyoxalase inducers; improved dietary patterns, particularly Mediterranean and low glycemic diets; and enhancing proteolytic capacities of the ubiquitin-proteasome and autophagy pathways that are involved in cellular clearing of AGEs.     

Reciprocal facilitation and non‐linearity maintain habitat engineering on coral reefs

Ecosystem engineers that create habitats facilitate the coexistence of many interacting species. This biotic response to habitat engineering may result in non‐intuitive cascading interactions, potentially including feedbacks to the engineer. Such feedback mechanisms, either positive or negative, may be especially important for the maintenance of biogenic habitats and their community‐wide facilitation. Here, we describe the complex interactions and feedbacks that link marine habitat‐forming engineers, the reef‐building corals, and a group of herbivores, the parrotfishes; the latter preventing the overgrowth of macroalgae, a major competitor of corals. Using density data of eight parrotfish species on a Caribbean reef, we first describe the form of the response of parrotfish abundance to increasing topographic complexity generated by coral growth. Topographic complexity enhanced parrotfish abundance by promoting habitat suitability, but the shape (linear vs asymptotic) and strength of this response varied across species and size. Parrotfish grazing intensity, estimated from data on abundance and species‐, size‐ and life phase‐specific grazing rates also increased with topographic complexity despite an increase in the surface area over which parrotfish graze. Depending on fish species, this functional response was found to be linear or asymptotic. Using a simple analytical model we then explored the effects of topographic complexity and fishing pressure on coral‐algal competition, with particular emphasis on the implications of non‐linearities in the intensity of grazing. Simulations demonstrate that fishing and habitat degradation impair the performance of grazing, but that an asymptotic response of grazing intensity to topographic complexity increases the ecological resilience of coral reefs. Parrotfish and corals are mutually beneficial by creating a loop of positive, indirect feedbacks that maintain their own structure and function: coral growth promotes habitat suitability for parrotfish, concordantly enhancing grazing intensity, which in turn facilitates coral growth by reducing competitive exclusion by macroalgae. We conclude that the resilience of biogenic habitats is enhanced by non‐linear biotic responses to engineering and by the emergence of reciprocal facilitation linking habitat engineering and response organisms.     

Transient Transcriptional Regulation of the CYS-C1 Gene and Cyanide Accumulation upon Pathogen Infection in the Plant Immune Response

Cyanide is produced concomitantly with ethylene biosynthesis. Arabidopsis (Arabidopsis thaliana) detoxifies cyanide primarily through the enzyme β-cyanoalanine synthase, mainly by the mitochondrial CYS-C1. CYS-C1 loss of function is not toxic for the plant and leads to an increased level of cyanide in cys-c1 mutants as well as a root hairless phenotype. The classification of genes differentially expressed in cys-c1 and wild-type plants reveals that the high endogenous cyanide content of the cys-c1 mutant is correlated with the biotic stress response. Cyanide accumulation and CYS-C1 gene expression are negatively correlated during compatible and incompatible plant-bacteria interactions. In addition, cys-c1 plants present an increased susceptibility to the necrotrophic fungus Botrytis cinerea and an increased tolerance to the biotrophic Pseudomonas syringae pv tomato DC3000 bacterium and Beet curly top virus. The cys-c1 mutation produces a reduction in respiration rate in leaves, an accumulation of reactive oxygen species, and an induction of the alternative oxidase AOX1a and pathogenesis-related PR1 expression. We hypothesize that cyanide, which is transiently accumulated during avirulent bacterial infection and constitutively accumulated in the cys-c1 mutant, uncouples the respiratory electron chain dependent on the cytochrome c oxidase, and this uncoupling induces the alternative oxidase activity and the accumulation of reactive oxygen species, which act by stimulating the salicylic acid-dependent signaling pathway of the plant immune system.The gaseous hormone ethylene is known to regulate multiple physiological and developmental processes in plants, such as seedling emergence, leaf and flower senescence, climacteric fruit ripening, and organ abscission. Ethylene is also involved in the response of plants to abiotic and biotic stresses (Wang et al., 2002; Broekaert et al., 2006; van Loon et al., 2006). Enhanced ethylene production is an early, active response of plants to the perception of pathogen attack and is associated with the induction of defense reactions. During ethylene biosynthesis, S-adenosyl-l-Met is converted to 1-aminocyclopropane-1-carboxylic acid (ACC) by ACC synthase. ACC is finally oxidized by ACC oxidase to form ethylene, carbon dioxide, and cyanide (Hartley et al., 1998; Wang et al., 2002). Hydrogen cyanide is a colorless and highly volatile liquid. The anion cyanide is toxic and renders the cells of an organism unable to use oxygen, primarily through the chelation of divalent and trivalent metal ions in the prosthetic groups of several metalloenzymes, including copper/zinc superoxide dismutase, catalase, nitrate and nitrite reductase, nitrogenase, peroxidases, and the mitochondrial cytochrome c oxidase (Isom and Way, 1984; Donato et al., 2007).Cyanide must be rapidly detoxified and metabolized by the plant to keep the concentration below toxic levels. Plants detoxify cyanide primarily through the enzyme β-cyanoalanine synthase (CAS), for which considerable levels of activity are constitutively found in many plant species. Rhodanese and mercaptopyruvate sulfurtransferase activities also make minor contributions to the cyanide detoxification process (Miller and Conn, 1980). CAS is a pyridoxal phosphate-dependent enzyme that converts Cys and cyanide to hydrogen sulfide and β-cyanoalanine, which is later converted to Asn, Asp, and ammonia by NIT4 class nitrilases (Piotrowski, 2008). Arabidopsis (Arabidopsis thaliana) plants carry the mitochondrial CAS CYS-C1 (At3g61440; Watanabe et al., 2008), which belongs to the family of β-substituted Ala synthase enzymes. The family also includes the three major O-acetyl-serine(thiol)lyase enzymes OAS-A1 (At4g14880), OAS-B (At2g43750), and OAS-C (At3g59760; Watanabe et al., 2008), the l-Cys desulfhydrase DES1 (At5g28030; Álvarez et al., 2010), the S-sulfocysteine synthase CS26 (At3g03630; Bermúdez et al., 2010), and the functionally unknown cytosolic isoforms CYS-D1 (At3g04940) and CYS-D2 (At5g28020). Mutations in CYS-C1 result in plants that accumulate cyanide and that display abnormal root hair (García et al., 2010), suggesting that cyanide has a signaling role in root development. The lack of the mitochondrial O-acetyl-serine(thiol)lyase isoform OAS-C, which is necessary to detoxify the sulfide released by the CAS activity, causes an accumulation of sulfide and cyanide and a root phenotype similar to the cys-c1 loss-of-function mutant (Álvarez et al., 2012b).Several authors have suggested that cyanide could act as a regulator of other metabolic processes in addition to performing the described role in plant root development (Siegien and Bogatek, 2006). It has been observed that this molecule is released during seed germination and that exogenously applied hydrogen cyanide breaks seed dormancy in several plants (Cohn and Hughes, 1986; Fol et al., 1989; Bogatek et al., 1991; Bethke et al., 2006). The role of cyanide as a regulatory molecule is not restricted to plants, and it has been demonstrated that cyanide is generated in leukocytes from Gly via a peroxidase (Stelmaszyńska, 1986) as well as in the central nervous system, where it has been hypothesized to act as a neuromodulator (Gunasekar et al., 2000; Cipollone and Visca, 2007). Cyanide production can be stimulated by opiates and decreased by treatment with muscarinic receptor agonists (Borowitz et al., 1997; Gunasekar et al., 2004).Despite the variety of known functions for cyanide in different organisms, the role of cyanide production in plants seems to have been unevaluated to date. In cyanogenic plants, cyanide is produced during the degradation of cyanogenic lipids and from the catabolism of cyanogenic glycosides (Poulton, 1990). Cyanide and cyanogenic compounds play an important role in plant defense against herbivores (Zagrobelny et al., 2008). In noncyanogenic plants, cyanide is a coproduct of ethylene biosynthesis. The molecule is also produced during the biosynthesis of camalexin, a phytoalexin formed in Arabidopsis plants upon infection by a large variety of microorganisms, including bacteria, fungi, and oomycetes (Glawischnig, 2007). During camalexin biosynthesis, the Trp-derived intermediate indole-3-acetonitrile is conjugated with Cys and serves as a substrate for the cytochrome P450 enzyme CYP71B15. This enzyme catalyzes the formation of the thiazoline ring as well as the release of cyanide and subsequent oxidative decarboxylation of dihydrocamalexic acid to camalexin (Glawischnig, 2007; Böttcher et al., 2009). Since both cyanide sources, camalexin and ethylene, are produced after pathogen attack, cyanide should be produced at significant levels during the plant response to pathogens. It has been shown that exogenous cyanide can enhance the resistance of tobacco (Nicotiana tabacum) and Arabidopsis leaves to Tobacco mosaic virus and Turnip vein clearing virus, respectively (Chivasa and Carr, 1998; Wong et al., 2002). Recently, it has been demonstrated that exogenously applied cyanide increases the resistance of young rice (Oryza sativa) plants to blast fungus infection, suggesting that cyanide rather than ethylene contributes to plant resistance (Seo et al., 2011).This work aims to further investigate the role of endogenously produced cyanide in the plant immune response by analyzing the behavior of Arabidopsis knockout mutants of the mitochondrial CAS CYS-C1 and the regulation of CYS-C1 in response to pathogen attack.     

Calbindin‐D28k and calretinin in chicken inner retina during postnatal development and neuroplasticity by dim red light

Members of the family of calcium binding proteins (CBPs) are involved in the buffering of calcium (Ca2+) by regulating how Ca2+ can operate within synapses or more globally in the entire cytoplasm and they are present in a particular arrangement in all types of retinal neurons. Calbindin D28k and calretinin belong to the family of CBPs and they are mainly co‐expressed with other CBPs. Calbindin D28k is expressed in doubles cones, bipolar cells and in a subpopulation of amacrine and ganglion neurons. Calretinin is present in horizontal cells as well as in a subpopulation of amacrine and ganglion neurons. Both proteins fill the soma at the inner nuclear layer and the neuronal projections at the inner plexiform layer. Moreover, calbindin D28k and calretinin have been associated with neuronal plasticity in the central nervous system. During pre and early postnatal visual development, the visual system shows high responsiveness to environmental influences. In this work we observed modifications in the pattern of stratification of calbindin immunoreactive neurons, as well as in the total amount of calbindin through the early postnatal development. In order to test whether or not calbindin is involved in retinal plasticity we analyzed phosphorylated p38 MAPK expression, which showed a decrease in p‐p38 MAPK, concomitant to the observed decrease of calbindin D28k. Results showed in this study suggest that calbindin is a molecule related with neuroplasticity, and we suggest that calbindin D28k has significant roles in neuroplastic changes in the retina, when retinas are stimulated with different light conditions. © 2013 Wiley Periodicals, Inc. Develop Neurobiol 73: 530–542, 2013     

Proteasome Failure Promotes Positioning of Lysosomes around the Aggresome via Local Block of Microtubule-Dependent Transport

Ubiquitinated proteins aggregate upon proteasome failure, and the aggregates are transported to the aggresome. In aggresomes, protein aggregates are actively degraded by the autophagy-lysosome pathway, but why targeting the aggresome promotes degradation of aggregated species is currently unknown. Here we report that the important factor in this process is clustering of lysosomes around the aggresome via a novel mechanism. Proteasome inhibition causes formation of a zone around the centrosome where microtubular transport of lysosomes is suppressed, resulting in their entrapment and accumulation. Microtubule-dependent transport of other organelles, including autophagosomes, mitochondria, and endosomes, is also blocked in this entrapment zone (E-zone), while movement of organelles at the cell periphery remains unaffected. Following the whole-genome small interfering RNA (siRNA) screen for proteins involved in aggresome formation, we defined the pathway that regulates formation of the E-zone, including the Stk11 protein kinase, the Usp9x deubiquitinating enzyme, and their substrate kinase MARK4. Therefore, upon proteasome failure, targeting of aggregated proteins of the aggresome is coordinated with lysosome positioning around this body to facilitate degradation of the abnormal species.