Impact of coronal and sagittal views on lung gross tumor volume delineation

Background and purposeTo study the impact of coronal and sagittal views (CSV) on the gross tumor volume (GTV) delineation on CT and matched PET/CT scans in non-small cell lung cancer.Material and methodsGTV delineations were performed by 11 experienced radiation oncologists on CT and PET/CT in 22 patients. Two tumor groups were defined: Group I: Primary tumors surrounded by lung or visceral pleura, without venous invasion, and without large extensions to the chest wall or the mediastinum. Group II: Tumors invading the hilar region, heart, large vessels, pericardium, and the mediastinum and/or associated with atelectasis. Tumor volumes and inter-observers variations (SD) were calculated and compared according to the use of axial view only (AW), axial/coronal/sagittal views (ACSW) and ACSW/PET (ACSWP).ResultsCSV were not frequently used (57.4% out of 242 delineations on CT). For group I, ACSW didn’t improve significantly mean GTVs. SDs were small on CT and on PET (SD = 0.3 cm). For group II, ACSW had 27–46% smaller observer variation (mean SD = 0.7 cm) than AW (mean SD = 1.1 cm). The smaller observer variation of ACSW users was associated with, on average, a 40% smaller delineated volume (p = 0.038). Mean GTV of ACSWP was 21% larger than mean GTV of ACSW on CT.ConclusionsFor smaller lung tumors surrounded by healthy lung tissue the effect of multiple axis delineation is limited. However, application of coronal and sagittal windows is highly beneficial for delineation of more complex tumors, with atelectasis and/or pathological lymph nodes even if PET is used.     

Effect of diagnostic cone-beam computed tomography protocols on image quality,patient dose,and lesion detection

ObjectiveTo evaluate the effect of cone-beam computed tomography (CBCT) image acquisition protocols on image quality, lesion detection, delineation, and patient dose.Methods100-patients and a CTDI phantom combined with an electron density phantom were examined using four different CBCT-image acquisition protocols during image-guided transarterial chemoembolization (TACE). Protocol-1 (time: 6 s, tube rotation: 360°), protocol-2 (5 s, 300°), protocol-3 (4 s, 240°) and protocol-4 (3 s, 180°) were used. The protocols were first investigated using a phantom. The protocols that were found to be clinically appropriate in terms of image quality and radiation dose were then assessed on patients. A higher radiation dose and/or a poor image quality were inappropriate for the patient imaging. Patient dose (patient-entrance dose and dose-area product), image quality (Hounsfield Unit, noise, signal-to-noise ratio and contrast-to-noise ratio), and lesion delineation (tumor-liver contrast) were assessed and compared using appropriate statistical tests. Lesion detectability, sensitivity, and predictive values were estimated for CBCT-image data using pre-treatment patient magnetic resonance imaging.ResultsThe estimated patient dose showed no statistical significance (p > 0.05) between protocols-2 and -3; the assessed image quality between these protocols manifested insignificant difference (p > 0.05). Two other phantom protocols were not considered for patient imaging due to significantly higher dose (protocols-1) and poor image quality (protocol-4). Lesion delineation and detection were insignificant (p > 0.05) between protocols-2 and -3. Lesion sensitivities generated were 81–89% (protocol-2) and 81–85% (protocol-3) for different lesion types.ConclusionData acquisition using protocols-2 and -3 provided good image quality, lesion detection and delineation with acceptable patient dose during CBCT-imaging mainly due to similar frame numbers acquired.     

Spatial heterogeneity distribution of soil total nitrogen and total phosphorus in the Yaoxiang watershed in a hilly area of northern China based on geographic information system and geostatistics

Soil total nitrogen (STN) and total phosphorus (STP) are important indicators of soil nutrients and the important indexes of soil fertility and soil quality evaluation. Using geographic information system (GIS) and geostatistics, the spatial heterogeneity distribution of STN and STP in the Yaoxiang watershed in a hilly area of northern China was studied. The results showed that: (1) The STN and STP contents showed a declining trend with the increase in soil depth; the variation coefficients (C_v) of STN and STP in the 0‐ to 10‐cm soil layer (42.25% and 14.77%, respectively) were higher than in the 10‐ to 30‐cm soil layer (28.77% and 11.60%, respectively). Moreover, the C_v of STN was higher than that of STP. (2) The maximum C₀/(C₀ + C₁) of STN and STP in the soil layers was less than 25%, this indicated that a strong spatial distribution autocorrelation existed for STN and STP; and the STP showed higher intensity and more stable variation than the STN. (3) From the correlation analysis, we concluded that the topographic indexes such as elevation and slope direction all influenced the spatial distribution of STN and STP (correlation coefficients were 0.688 and 0.518, respectively). (4) The overall distribution of STN and STP in the Yaoxiang watershed decreased from the northwest to the southeast. This variation trend was similar to the watershed DEM trend and was significantly influenced by vegetation and topographic factors. These results revealed the spatial heterogeneity distribution of STN and STP, and addressed the influences of forest vegetation coverage, elevation, and other topographic factors on the spatial distribution of STN and STP at the watershed scale.     

Characteristics of softwater streams in Rhode Island. III. Distribution of macrophytic vegetation in a small drainage basin

The Wood River watershed, a small well-defined drainage basin in Rhode Island was monitored seasonally for all macrophytic vegetation and various physical variables. Twenty-four segments, 20 m in length were sampled. Mean stream depth, width and current velocity increased by 3 to 8 fold from 1st- to 4th-order segments. Light penetration was positively correlated with the above variables (p < 0.05) and increased by 11 fold from the headwaters to the mouth during September when the riparian canopy was maximum. 74 subgeneric taxa of macrophytes were collected in the Wood River basin, 36% algae, 13% bryophytes, 4% vascular cryptograms and 45% angiosperms. The highest diversity occurred in the 4th-order segments throughout the year. Species numbers were positively correlated with depth, width and light penetration (p < 0.05). Vascular plants dominated all orders, but their proportion doubled from 1st- to 4th-order streams. Macrophyte cover was twice as high in the 4th-order segments in June and September as in the other orders. Macrophyte abundance was positively correlated to light penetration and negatively correlated to the ratio of nonvascular: vascular plants (p < 0.05). Two distinct clusters were found for the predominant species. The first cluster contained mostly large angiosperms, which were rooted in sediments, while the second cluster was composed of small epilithic algae and bryophytes. The moss, Fontinalis antipyretica, was the most frequent species, occurring in 51% of the samples and in all 4 orders throughout the year.     

Atmospheric deposition and solute export in giant sequoia — mixed conifer watersheds in the Sierra Nevada,California

Atmospheric depostion and stream discharge and solutes were measured for three years (September 1984 — August 1987) in two mixed conifer watersheds in Sequoia National Park, in the southern Sierra Nevada of California. The Log Creek watershed (50 ha, 2067–2397 m elev.) is drained by a perennial stream, while Tharp's Creek watershed (13 ha, 2067–2255 m elev.) contains an intermittent stream. Dominant trees in the area include Abies concolor (white fir), Sequoiadendron giganteum (giant sequoia), A. magnifica (red fir), and Pinus lambertiana (sugar pine). Bedrock is predominantly granite and granodiorite, and the soils are mostly Pachic Xerumbrepts. Over the three year period, sulfate (SO₄ ^2–), nitrate (NO₃ ^–), and chloride (Cl^–1) were the major anions in bulk precipitation with volume-weighted average concentrations of 12.6, 12.3 and 10.0 eq/1, respectively. Annual inputs of NO₃-N, NH₄-N and SO₄-S from wet deposition were about 60 to 75% of those reported from bulk deposition collectors. Discharge from the two watersheds occurs primarily during spring snowmelt. Solute exports from Log and Tharp's Creeks were dominated by HCO₃ ^–, Ca²⁺ and Na⁺, while H⁺, NO₃ ^–, NH₄ ⁺ and PO₄ ^3– outputs were relatively small. Solute concentrations were weakly correlated with instantaneous stream flow for all solutes (r² <0.2) except HCO₃ ^– (Log Cr. r² = 0.72; Tharp's Cr. r² = 0.38), Na⁺ (Log Cr. r² = 0.56; Tharp's Cr. r² = 0.47), and silicate (Log Cr. r² = 0.71; Tharp's Cr. r² = 0.49). Mean annual atmospheric contributions of NO₃-N (1.6 kg ha^–1), NH₄-N (1.7 kg ha^–1), and SO₄-S (1.8 kg ha^–1), which are associated with acidic deposition, greatly exceed hydrologic losses. Annual watershed yields (expressed as eq ha^–1) of HCO₃ ^– exceeded by factors of 2.5 to 37 the annual atmospheric deposition of H⁺.     

Stream chemistry and hydrologic pathways during snowmelt in a small watershed adjacent Lake Superior

In regions with airborne contaminants and large snowpacks, there is concern over the impact that snowmelt chemical pulses — periods of sharp increase in meltwater solute concentration — could have on aquatic resources during spring runoff. A major variable in determining such an effect is the flow path of snowmelt solutes to the stream or lake. From December 1988, to late April 1989, the quality and quantity of precipitation, snowmelt, soil solution and streamwater were measured in a 176-ha gauged watershed on the south shore of Lake Superior. The main objectives were to (1) examine the change in flow path meltwaters take to the stream during distinct winter and spring hydrologic periods, (2) quantify ecosystem-level ion budgets prior to, during, and following snowmelt, and (3) examine if streamwater chemistry might be a sensitive indicator of change in ecosystem flow paths. Prior to peak snowmelt, groundwater made up 80% of stream discharge. During peak snowmelt, the groundwater level rose to the soil surface resulting in lateral water movement through near-surface macropores and as overland flow. Near the end of snowmelt, melt-waters exerted a piston action on deeper soil solution again increasing its relative contribution to streamwater discharge. Net groundwater drawdown during the study resulted in streamwater discharge about equal to precipitation inputs. Unfrozen soils and brief mid-winter thaws resulted in steady snowmelt throughout early and mid-winter. The snowpack lost > 50% of most ions prior to the period of major snowmelt and high stream discharge in late March and early April. Snowmelt and streamwater NO₃ ^– and NH₄ pulses occurred before the period of overland flow and peak streamwater discharge (April 4–24). During overland flow, stream discharge of total N, P, DOC, and AI peaked. Nutrient budgets computed for distinct hydrologic periods were much more helpful in explaining ecosystem pathways and processes than were changes in solute concentration. For the study period, watershed base cation (C_B) discharge was 23 times input and SO₄ ^2– discharge exceeded input by 42%. H⁺ was the most strongly conserved ion with output < 0.2% of input. Also conserved were NH₄ ⁺ with only 1.4% of input leaving the ecosystem and NO₃ ^– with output equal to 9.4% of input.     

Processes regulating temporal and longitudinal variations in the chemistry of a low-order woodland stream in the Adirondack region of New York

Watershed processes influence the acid neutralizing capacity of surface waters by mediating changes in concentration of ionic solutes. Acidification of surface waters by atmospheric deposition of mineral acids and the extent to which ecosystem transformations neutralize this acidity are of particular concern. Seasonal variations in flow paths of water through soil and biological processes result in short-term changes in chemistry that may be critical to surface water ecology. In this study, we assessed longitudinal and temporal variations in the chemistry of a low-order stream, Pancake-Hall Creek, located in the west-central Adirondack region of New York. By quantifying changes in ionic solute concentration (e.g. Ca²⁺, Al^a+, SO ₄ ^2– , NO ₃ ^– ) we were able to evaluate processes responsible for short-term fluctuations in acid/base chemistry.In the headwater sites, stream water was acidic; changes in pH, acid neutralizing capacity (ANC) and Al were primarily due to seasonal variations in basic cation and NO ₃ ^– concentrations. At the downstream sites, water migrated through a large beaver impoundment and thick till resulting in higher pH, acid neutralizing capacity and basic cation concentrations, and lower concentrations of Al. Neutralization of acidity was particularly evident during the low flow summer period and coincided with retention of SO ₄ ^2– in the beaver impoundment. During the high flow non-summer (October to June) period, depressed pH and ANC, and elevated Al concentrations were observed in the downstream sites. Acidic conditions during the non-summer period were not due to the oxidation of reduced sulfur deposits (e.g. SO ₄ ^2– events) but rather the resumption of conservative SO ₄ ^2– transport through the beaver impoundment (e.g. minimal SO ₄ ^2– retention) coupled with increases in NO ₃ ^– .     

Species discovery in marine planktonic invertebrates through global molecular screening

Species discovery through large‐scale sampling of mitochondrial diversity, as advocated under DNA barcoding, has been widely criticized. Two of the primary weaknesses of this approach, the use of a single gene marker for species delineation and the possible co‐amplification of nuclear pseudogenes, can be circumvented through incorporation of multiple data sources. Here I show that for taxonomic groups with poorly characterized systematics, large‐scale genetic screening using a mitochondrial DNA marker can be a very effective approach to species discovery. Global sampling (120 locations) of 1295 individuals of 22 described species of eucalanid copepods identified 15 novel evolutionarily significant units (ESUs) within this marine holoplanktonic family. Species limits were tested under reciprocal monophyly at the mitochondrial (mt) gene 16S rRNA, and 13 of 15 lineages were reciprocally monophyletic under three phylogenetic inference methods. Five of these mitochondrial ESUs also received moderate support for reciprocal monophyly at the independently‐inherited nuclear gene, internal transcribed spacer 2 (ITS2). Additional support for the utility of mt DNA as a proxy for species boundaries in this taxon is discussed, including results from related morphological and biogeographic studies. Minimal overlap of intra‐ESU and inter‐ESU 16S rRNA genetic distances was observed, suggesting that this mt marker performs well for species discovery via molecular screening. Sampling coverage required for the discovery of new ESUs was found to be in the range of >50 individuals/species, well above the sampling intensity of most current DNA Barcoding studies. Large‐scale genetic screening can provide critical first data on the presence of cryptic species, and should be used as an approach to generate systematic hypotheses in groups with incomplete taxonomies.     

流域生态服务价值供给的补偿标准评估——以渭河流域上游为例

十九大报告明确提出,健全河流湖泊休养生息制度,建立多元化的生态补偿机制,而准确核算流域生态服务价值供给的补偿标准是建立科学的流域生态补偿机制的关键要素。对于补偿标准的核算,鲜有学者从公平的视角出发,考虑补偿标准应在生态服务价值供给的基础上剔除本地区的自身消费。首先对流域生态服务供给方的供给行为与流域生态补偿标准的评估依据进行理论探讨,提出流域生态补偿标准应以生态环境价值为依据,对生态保护行为的生态外溢环境价值进行补偿;其次,在理论分析的基础上以渭河流域为例,构建当量因子模型测算渭河上游2006—2015年供给的生态服务价值,并结合水足迹法测算并剔除2006—2015年渭河上游自身消费的生态服务价值;最后,测得渭河上游应获得的补偿标准由2006年的12.82亿元上升至2015年的44.09亿元,总体呈增长趋势,说明上游为保护流域生态环境不断付出努力,不断增加对下游的剩余生态服务价值供给。