Anaerobic degradation of dimethylsulfoniopropionate to 3-S-methylmercaptopropionate by a marine Desulfobacterium strain

Dimethylsulfoniopropionate, an osmolyte of marine algae, is thought to be the major precursor of dimethyl sulfide, which plays a dominant role in biogenic sulfur emission. The marine sulfate-reducing bacterium Desulfobacterium strain PM4 was found to degrade dimethylsulfoniopropionate to 3-S-methylmercaptopropionate. The oxidation of one of the methyl groups of dimethylsulfoniopropionate was coupled to the reduction of sulfate; this process is similar to the degradation betaine to dimethylglycine which was described earlier for the same strain. Desulfobacterium PM4 is the first example of an anaerobic marine bacterium that is able to demethylate dimethylsulfoniopropionate.Abbreviations DMSP dimethylsulfoniopropionate - DMS dimethyl sulfide - MMPA 3-S-methylmercaptopropionate     

基于差异基因表达谱的Microbacterium sp. XT11降解黄原胶潜能挖掘

为挖掘微杆菌(Microbacterium sp.)XT11在黄原胶降解过程中起关键作用的功能基因,预测黄原胶降解通路,利用转录组测序技术对该菌株在不同碳源培养条件下的转录本进行测序,对差异基因进行功能富集分析。结果表明,菌株XT11以葡萄糖为对照组,以黄原胶为碳源时可获得上调差异基因213个。显著上调的基因主要富集在聚糖降解、淀粉和蔗糖代谢途径、ABC转运、苯丙氨酸代谢、丙酮酸代谢五个KEGG途径。碳水化合物活性酶(Carbohydrate-active enzymes, CAZymes)功能注释表明,位于同一基因簇上的4个CAZymes基因和黄原胶降解直接相关,其余的CAZymes基因具有潜在的黄原胶降解活性。此外,预测到磷酸转移酶系统(phosphotransferase system, PTS)和ABC转运途径(ABC transporters)参与了胞外黄原胶降解中间产物的跨膜转运。挖掘了菌株XT11中黄原胶降解过程中的功能基因,并阐述了菌株XT11的黄原胶降解通路。     

Phytochelatin-mediated cadmium tolerance inschizosaccharomyces pombe

Summary Plants and certain fungi respond to heavy metal toxicity with the induced synthesis of metal-binding peptides known as phytochelatins (PCs). With cadmium, PCs can bind the metal to form a low molecular weight PC-Cd complex and a high molecular weight PC-Cd-S²⁻ complex. The sulfide ions enhance the stability and Cd-binding capacity of the metal chelate, and formation of this sulfide-containing complex is associated with enhanced tolerance to cadmium. Molecular analyses of two fission yeast mutants that fail to produce a wild type level of the PC-Cd-S²⁻ complex have determined that a vacuolar membrane transporter and several enzymes of the purine biosynthesis pathway are necessary in vivo for formation of the PC- Cd-S²⁻ complex. A model based on vacuolar sequestration of the PC-Cd complex by an ATP-binding cassette-type transporter and its subsequent maturation into the stable PC-Cd-S²⁻ complex via the actions of two purine biosynthetic enzymes is described. Presented in the Session-in-Depth Bioremediation through Biotechnological Means at the 1993 Congress on Cell and Tissue Culture, San Diego, CA, June 5–9, 1993.     

Genetic disruption of mammalian endoplasmic reticulum-associated protein degradation: Human phenotypes and animal and cellular disease models

Endoplasmic reticulum-associated protein degradation (ERAD) is a stringent quality control mechanism through which misfolded, unassembled and some native proteins are targeted for degradation to maintain appropriate cellular and organelle homeostasis. Several in vitro and in vivo ERAD-related studies have provided mechanistic insights into ERAD pathway activation and its consequent events; however, a majority of these have investigated the effect of ERAD substrates and their consequent diseases affecting the degradation process. In this review, we present all reported human single-gene disorders caused by genetic variation in genes that encode ERAD components rather than their substrates. Additionally, after extensive literature survey, we present various genetically manipulated higher cellular and mammalian animal models that lack specific components involved in various stages of the ERAD pathway.     

Four centuries of cumulative impacts on a Finnish river and its estuary: an ecosystem health-approach

Changes in forest cover and draining of wetlands for agriculture appear to have caused changes in the aquatic ecosystem of the River Kyrönjoki by the 16th century. In the 19th century, a decline of salmonid fish populations was widely observed as a further sign of degradation. During the latter half of the present century intensified use of naturally acidic soils has resulted in increased acidic run-off. Deterioration of water quality has extended to the estuary, where it has caused large fish-kills and affected the reproductive success of coastal species. Degradation of the coastal ecosystem, first observed in the decline of salmonids and later as a more general decline of other coastal fish populations, can be linked to spatially restricted events. The loss of key river and estuarine habitats exerted an effect over the reproduction and abundance of species migrating throughout the system. This effect contributed to observed temporal and spatial discontinuities in the degradation history. Monitoring changes in critical habitats may prove to be an early indicator of changes in the health of estuarine and coastal aquatic ecosystems.     

β-Cyclodextrin-Based Nitrosoglutathione Improves the Storage Quality of Peach by Regulating the Metabolism of Endogenous Nitric Oxide,Hydrogen Sulfide,and Phenylpropane

Nitrosoglutathione (GSNO) and β-cyclodextrin (β-CD) exhibit positive roles in regulating fruit quality. However, there are few reports about the effects of GSNO and β-CD on enhancing storability and boosting nitric oxide (NO), hydrogen sulfide (H₂S), and phenylpropane metabolism in fruits during storage. “Xintaihong” peach were treated with 0.5, 1.0, 1.5 mmol L⁻¹ GSNO in 0.5% (w/v) β-CD solution (GSNO/β-CD). The effects of GSNO/β-CD on endogenous NO, H₂S, and phenylpropane metabolism were investigated. Treatment with GSNO/β-CD increased the color difference of peach and inhibited the increase of respiratory intensity, weight loss, and relative conductivity. Treatment with 1.0 mmol L⁻¹ GSNO/β-CD increased the nitric oxide synthase (NOS-like) activity and L-arginine content, thereby promoting the accumulation of endogenous NO. By improving the activities of L-cysteine desulfhydrylase (L-CD), O-acetylserine sulfur lyase (OAS-TL), serine acetyltransferase (SAT), GSNO/β-CD increased the content of endogenous H₂S in peach. Treatment with GSNO/β-CD increased the activities of phenylalanine ammonia-lyase (PAL), 4-coumarate-CoA ligase (4CL), and cinnamic acid-4-hydroxylase (C4H), promoted the increase of total phenols, flavonoids, and lignin in peach. These results indicated that GSNO/β-CD treatment better maintained the quality of peach by improving the metabolism of endogenous NO, H₂S, and phenylpropane during storage.     

Synergistic interaction between two bacterial isolates in the degradation of carbofuran

The dominant bacteriaPseudomonas sp. andArthrobacter sp. were isolated from the standing water of carbofuran-retreatedAzolla plot.Arthrobacter sp. hydrolysed carbofuran added to the mineral salts medium as a sole source of carbon and nitrogen while no degradation occurred withPseudomonas sp. Interestingly, when the medium containing carbofuran was inoculated with bothArthrobacter sp. andPseudomonas sp., a synergistic increase in its hydrolysis and subsequent release of CO₂ from the side chain was noticed. This synergistic interaction was better expressed at 25° C than at 35° C. Likewise, related carbamates, carbaryl, bendiocarb and carbosulfan were more rapidly degraded in the combined presence of both bacterial isolates.     

大麦虫及其肠道微生物对聚乙烯的生物降解

【背景】废旧塑料聚乙烯因具有较高的化学惰性,不易被自然降解而形成长期污染。【目的】探究聚乙烯泡沫塑料对大麦虫生长发育的影响,为大麦虫作为降解聚乙烯泡沫塑料的昆虫推广提供理论依据。【方法】以大麦虫幼虫为研究对象,选用常见的泡沫塑料(聚乙烯),采用4种不同的饲喂方式T1 (麦麸)、T2 (泡沫塑料)、T3 (泡沫塑料+麦麸)、T4 (不饲喂)进行驯化,处理30 d后对大麦虫进行解剖,取肠道内容物于LB培养基中进行富集培养,将富集培养后的菌液加入以聚乙烯(polyethylene,PE)为唯一碳源的LCFBM培养基进行选择性培养,从中筛选分离得到对PE塑料有降解能力的菌株。【结果】取食泡沫塑料30d后,与单一饲喂PE相比,麦麸和PE混合饲喂后大麦虫幼虫的存活率为76%。采用傅里叶变换红外光谱检测发现虫粪组分中主要官能团中峰值明显变化,表明PE长链有断裂现象,并从肠道中分离得到3株可以对PE薄膜边缘造成明显侵蚀的菌株。【结论】大麦虫可取食并消化PE塑料,其肠道内的微生物对PE塑料的降解起到关键作用,研究结果为塑料污染的生物降解提供了科学证据。