基于信息技术的蛋白质识别研究

随着质谱技术和NMR等仪器测定技术的飞速发展,利用大规模质谱技术可以得到海量蛋白质的质谱数据。同时,利用NMR技术也可获得蛋白质的精确三维结构数据。这些数据以及面向这些数据的分析方法使得蛋白质组研究迅速发展,其基础理论和技术方法,都在不断地进步和完善。利用信息工程技术辅助生物学家开展面向质谱技术的高温量蛋白识别,面向NMR的蛋白质三维结构识别,以及功能发现研究,已经成为蛋白质组中的生命科学与信息科学交叉研究的热点和挑战问题。本文侧重从信息技术的角度对上述问题进行综述,并提出我们解决问题的思路和方法。     

水稻蛋白质组学研究

水稻是全球最重要的粮食作物之一,目前水稻基因组精细图谱已得到全面解析,运用以双向电泳和质谱分析为主的蛋白质组技术平台对水稻各种组织器官进行蛋白质组学研究也取得了诸多进展,对水稻蛋白质组研究背景,技术路线及取得的进展进行了介绍,并对水稻蛋白质组的发展作了展望。     

基于谱域相干的细胞动态检测技术

将谱域光学相干层析技术（Spectral-domain Optical Coherence Tomography,SD-OCT）应用于细胞膜厚的动态检测,引入了光谱干涉测量方法,通过对干涉光谱信号进行离散傅里叶变换得到表示物体深度位置信息的光程差信号。搭建了一套SD-OCT测量系统并设计了专门用于细胞检测的样品平台,检测精度达到μm量级,信噪比达70 db,是一种快速、实时、非接触的细胞分子膜厚动态检测技术。     

粗毛栓菌和蜡状芽孢杆菌及其共固定菌对pb2+的吸附

将粗毛栓菌菌丝球与蜡状芽孢杆菌共固定为共固定菌.以粗毛栓菌菌丝球、蜡状芽孢杆菌和共固定菌为研究对象,测定不同吸附时间、初始pH、吸附剂浓度和pb2+浓度对3种生物吸附剂吸附pb2+的影响,并将3种生物吸附剂吸附pb2+前后的红外吸收光谱进行分析比较.结果表明:在吸附剂浓度为2g.L-1、pH为5.0、pb2+浓度为50 mg·L-1条件下对pb2+吸附lh效果良好,其吸附率分别为71.7％、91.0％和96.9％.生物吸附剂红外光谱主要由蛋白质、碳水化合物和含硫、磷酸基团的吸收带组成,表明对pb2+吸附起主要作用的官能团是羟基、羧基、磷酸基和含硫基团.     

缙云山常绿阔叶林不同演替阶段植物生活型谱比较研究

采用Raunkiner生活型分类系统,对缙云山常绿阔叶林不同演替阶段植物的生活型进行统计,编制了生活型谱,并与其他亚热带地区常绿阔叶林相比较。结果表明,缙云山植被属典型的中亚热带常绿阔叶林植被,高位芽植物占绝对优势,达80％以上,其中小高位芽植物最多,中高位芽与矮高位芽植物次之,藤本植物较丰富。缙云山不同演替阶段的植物的生活型谱不同。随着进展演替阶段的逐渐更替,高位芽植物的比例呈递增趋势,地面芽植物、地下芽植物成分有所减少。高位芽的常绿树种会逐渐代替针叶树种。     

Membrane-potential- and surface-potential-induced absorbance changes of merocyanine dyes added to chromatophores from Rhodopseudomonas sphaeroides

(1) Three analogs of merocyanine dyes added to suspensions of chromatophore vesicles showed absorbance changes responding to the change in surface potential induced by salt addition and to the change in membrane potential induced by illumination. (2) The extent of the light-induced absorbance changes of the dyes was linearly related, in the presence and absence of uncouplers, to that of carotenoid spectral shift which is an intrinsic probe of the intramembrane electric field. (3) Comparison of the merocyanine absorbance changes induced by salt addition with those induced by illumination indicated that the surface potential change in the outer surface of chromatophore membranes during illumination was very small. (4) Judging from the spectra of these absorbance and from the low permeabilities of the dyes to membrane, the absorbance change are attributed to change in distribution of the dyes between the medium and the outer surface region in chromatophore membranes. The extent of the light-induced absorbance changes of merocyanine dyes depended on the salt concentration of the medium. The types of dependence were different among three merocyanine analogs. This is explained by the mechanism mentioned above assuming appropriate parameters. It is suggested that, under continuous illumination, an equilibrium of the electrochemical potential of H⁺ is reached between the bulk aqueous phase and the outer surface region in the membrane where the merocyanine dyes are distributed.     

Induction and characterization of pigmentation mutants in Porphyra yezoensis (Bangiales, Rhodophyta)

Porphyra yezoensis Ueda conchospore germlings (1–4-cell stages) were treated with N-methyl-N′-nitro-N-nitrosoguanidine (MNNG) for inducing mutations. Three kinds of color-mutated gametophytic blades, which were composed of the mutated cells wholly, sectorially or spottedly, were obtained; and most of them were sectorially variegated blades. The highest frequency of these mutated blades was 1.3%. Four different pigmentation mutant strains were obtained by regenerating single cells and protoplasts that were enzymatically isolated from the mutated sectors of the sectorially variegated blades. The mutants were relatively stable in color in both gametophytic blade and conchocelis phases. In the two phases, each mutant strain showed characteristic differences in the in vivo absorption spectra, and had different pigment contents of major photosynthetic pigments (chlorophyll a, phycoerythrin and phycocyanin) as compared with the wild-type and with each other. The gametophytic blades from the four mutant lines showed significant differences in growth and photosynthetic rates, when they were cultured in the same conditions. By crossing the mutant with the wild-type, it was found that the color phenotypes of two mutants reported above, were resulted from two mutations in different genes, respectively. This revised version was published online in August 2006 with corrections to the Cover Date.     

Physical, chemical and spectral properties of leaf surfaces of Berberis aquifolium (Pursh.)

Abstract The leaves of Berberis aquifolium (Pursh.) exhibit either diffuse or specular (shiny) reflection, depending on the variety, but in no case are the leaves obviously glaucous. The dull-surfaced leaves were less wettable than the glossy ones. Using scanning electron microscopy it was determined that the diffuse reflection was due to tubular crystals of wax 250 nm in diameter. The crystals were primarily composed of 19-nonacosanol, a 29-carbon secondary alcohol, as determined by gas chromatography-mass spectrometry. The chemical constituents of the wax underlying the tubes appeared to be the same as those of the wax from glossy leaves, with 29-carbon and 31-carbon n-alkanes and n-heptacosanol as major constituents. The reflection spectra of dull-surfaced (diffuse reflection) or glossy (specular reflection) leaves were the same, as were those of leaves with different amounts of epicuticular wax. Removing the epicuticular wax with chloroform did not change the spectrum.     

一个恢复力受单基因控制的水稻CMS育性回复突变体

利用￣（６０）Ｃｏ－γ射线对具有印尼水田谷细胞质的籼稻细胞质雄性不育系Ⅱ－３２Ａ干种子进行诱变处理,获得了一育性回复突变体Ｔ２４。育性基因未纯合的突变体分离出可育株和完全不育株,比例为３∶１;其与Ⅱ－３２Ａ和珍汕９７Ａ测交,Ｆ１代分离出１∶１的可育株和不育株。育性稳定株系与Ⅱ－３２Ａ和珍汕９７Ａ杂交,Ｆ２分离成３∶１的可育株和不育株。表明其育性回复是由一对基因显性突变所致。这一突变体对不育系的育性恢复机制不同于明恢６３、２０９６４等恢复系,后者表现为两对显性恢复基因作用。未观察到Ｔ２４与亲本Ⅱ－３２Ａ除育性以外的其他性状的差异,因而两者构成育性恢复基因的近等基因系。本文还对不育系育性回复类型和Ｔ２４的理论意义与育种价值进行了讨论。     

Action spectra of phototactic responses of the flea beetle, Phyllotreta striolata

Abstract.  Adult flea beetles, Phyllotreta striolata , show a strong positive phototactic response. The action spectrum of phototaxis of dark-adapted beetles was measured with minimal required light intensity between the wavelength range of 300 nm and 600 nm. Male and female flea beetles showed identical phototacitc behaviours. The beetles were most sensitive to light with peak wavelengths between 350 nm and 430 nm in the morning. In the afternoon and evening, the sensitivity to wavelengths shorter than 430 nm decreased, but they remained most sensitive to 430 nm. These results suggest that changes in sensitivity of the photoreceptors or nervous integration influence the phototactic responses, and that the blue wavelengths are more attractive than others.