基于可见光波段包络线去除的湿地植物叶片叶绿素估算

研究采用芦苇和香蒲叶片光谱及实测叶绿素含量数据,选取波段谱带范围为可见光波段400—760nm(为了避免近红外波段受叶片水分含量的影响,降低构建模型的稳定性),利用相关分析与逐步回归分析的统计学分析方法,建立叶面尺度下不同包络线去除衍生转换光谱:BD(band depth)、CRDR(continuum-removed derivative reflectance)、BDR(band depth ratio)、NBDI(normalized band depth index)与叶绿素含量估算模型。通过对入选波段的统计表明在550—750nm,特别是700—750nm(红边)波段范围内产生了较多的有效波段,是今后进行生物参量反演的重点波段范围。舍一交叉验证结果表明芦苇、香蒲和混合样本绿素含量估测的最佳模型分别为BD、CRDR和NBDI模型,其交叉验证决定系数依次为0.87、0.83和0.81,交叉验证均方根误差RMSE依次为0.16、0.15和0.33。并在此基础上利用独立样本非参数检验和多因子方差分析,探讨相关因素对于叶绿素含量估算模型精度的影响。结果表明物种差异、数据类型差异对于叶绿素回归模型的影响较大,而光谱类型差异及光谱数据与数据类型交互作用对于回归模型精度的影响较小。     

尿蛋白质组学在肾脏疾病研究中的应用

长期以来,肾脏病的治疗进展一直十分缓慢,这是因为目前一些肾脏病在诊断分型上存在很多缺陷,分型通常只能依靠细微的组织病理学差异,这使早期诊断、预后追踪以及疗效观察都十分困难。如果能发现像肌钙蛋白一样特异的生物学标志物,将有助于提高肾脏病的诊疗水平。由于尿液与泌尿系统之间存在着天然的联系,这使得尿液在反映泌尿系统功能方面具备"地理"优势。因此,尿蛋白质组学的兴起和发展为肾脏病及其他泌尿系统疾病的研究开启了一扇新的大门。该文综述了尿蛋白质组学技术的发展及其在各种泌尿系统疾病研究中的应用。     

Finite-time Lyapunov exponents and metabolic control coefficients for threshold detection of stimulus–response curves

In biochemical networks transient dynamics plays a fundamental role, since the activation of signalling pathways is determined by thresholds encountered during the transition from an initial state (e.g. an initial concentration of a certain protein) to a steady-state. These thresholds can be defined in terms of the inflection points of the stimulus–response curves associated to the activation processes in the biochemical network. In the present work, we present a rigorous discussion as to the suitability of finite-time Lyapunov exponents and metabolic control coefficients for the detection of inflection points of stimulus–response curves with sigmoidal shape.     

Frequency Analysis and Anti-Shock Mechanism of Woodpecker＇s Head Structure

The mechanical properties of the skull and the anti-shock characteristics of woodpecker＇s head were investigated by ex- periment and numerical simulation. We measured the micro-Young＇s modulus of the skull by nano-indentation method and calculated the macro-equivalent Young＇s modulus of the skull at different positions using homogenization theory. Based on the Computerized Tomography （CT） images of woodpecker head, we then built complete and symmetric finite element models of woodpecker＇s skull and its internal structure and performed modal analysis and stress spectrum analysis. The numerical results show that the application of pre-tension force to the hyoid bone can increase the natural frequency of woodpecker＇s head. The first natural frequency under the pre-tension force of 25 N reaches 57 Hz, which is increased by 21.3% from the non-pre-tension state and is more than twice the working frequency of woodpecker （20 Hz 25 Hz）. On the application of impact force to the tip of beak for 0.6 ms, high magnitudes of stress component occur at around 100 Hz and 8,000 Hz, far away from both the working frequencies and the natural frequencies of woodpecker head. The large gaps among the natural, working and stress response frequencies enable the woodpecker to effectively protect its brain from the resonance injury.     

An endo-(1→3)-β-d-glucanase from the scallop Chlamys albidus: catalytic properties, cDNA cloning and secondary-structure characterization

An endo-(1→3)-β-d-glucanase (L₀) with molecular mass of 37 kDa was purified to homogeneity from the crystalline style of the scallop Chlamys albidus. The endo-(1→3)-β-d-glucanase was extremely thermolabile with a half-life of 10 min at 37 °C. L₀ hydrolyzed laminaran with K_m ∼ 0.75 mg/mL, and catalyzed effectively transglycosylation reactions with laminaran as donor and p-nitrophenyl β d-glucoside as acceptor (K_m ∼ 2 mg/mL for laminaran) and laminaran as donor and as acceptor (K_m ∼ 5 mg/mL) yielding p-nitrophenyl β d-glucooligosaccharides (n = 2-6) and high-molecular branching (1→3),(1→6)-β-d-glucans, respectively. Efficiency of hydrolysis and transglycosylation processes depended on the substrate structure and decreased appreciably with the increase of the percentage of β-(1→6)-glycosidic bonds, and laminaran with 10% of β-(1→6)-glycosidic bonds was the optimal substrate for both reactions. The CD spectrum of L₀ was characteristic for a protein with prevailing β secondary-structural elements. Binding L₀ with d-glucose as the best acceptor for transglycosylation was investigated by the methods of intrinsic tryptophan fluorescence and CD. Glucose in concentration sufficient to saturate the enzyme binding sites resulted in a red shift in the maximum of fluorescence emission of 1-1.5 nm and quenching the Trp fluorescence up to 50%. An apparent association constant of L₀ with glucose (K_a = 7.4 × 10⁵ ± 1.1 × 10⁵ M⁻¹) and stoichiometry (n = 13.3 ± 0.7) was calculated. The cDNA encoding L₀ was sequenced, and the enzyme was classified in glycoside hydrolases family 16 on the basis of the amino acid sequence similarity.     

Contrasting Patterns in the Early Stage of SARS-CoV-2 Evolution between Humans and Minks

One of the unique features of SARS-CoV-2 is its apparent neutral evolution during the early pandemic (before February 2020). This contrasts with the preceding SARS-CoV epidemics, where viruses evolved adaptively. SARS-CoV-2 may exhibit a unique or adaptive feature which deviates from other coronaviruses. Alternatively, the virus may have been cryptically circulating in humans for a sufficient time to have acquired adaptive changes before the onset of the current pandemic. To test the scenarios above, we analyzed the SARS-CoV-2 sequences from minks (Neovision vision) and parental humans. In the early phase of the mink epidemic (April to May 2020), nonsynonymous to synonymous mutation ratio per site in the spike protein is 2.93, indicating a selection process favoring adaptive amino acid changes. Mutations in the spike protein were concentrated within its receptor-binding domain and receptor-binding motif. An excess of high-frequency derived variants produced by genetic hitchhiking was found during the middle (June to July 2020) and late phase I (August to September 2020) of the mink epidemic. In contrast, the site frequency spectra of early SARS-CoV-2 in humans only show an excess of low-frequency mutations, consistent with the recent outbreak of the virus. Strong positive selection in the mink SARS-CoV-2 implies that the virus may not be preadapted to a wide range of hosts and illustrates how a virus evolves to establish a continuous infection in a new host. Therefore, the lack of positive selection signal during the early pandemic in humans deserves further investigation.     

Heterologous expression of Arabidopsis pattern recognition receptor RLP23 increases broad‐spectrum resistance in poplar to fungal pathogens

The pattern recognition receptor AtRLP23 from Arabidopsis thaliana recognizes the epitopes (nlp24s) of necrosis and ethylene‐inducing peptide 1‐like proteins (NLPs) and triggers pattern‐triggered immunity (PTI). Here, we established methods for studying the early events of PTI in the hybrid poplar cultivar Shanxin (Populus davidiana × Populus bolleana) in response to the flagellin epitope. We confirmed that wild‐type Shanxin cannot generate PTI responses on nlp24 treatment. Four NLP homologues were characterized from two common fungal pathogens of Shanxin, namely Marssonina brunnea f. sp. monogermtubi (MbMo) and Elsinoë australis (Ea), which cause black leaf spot and anthracnose disease, respectively, and the nlp24s of three of them could be responded to by Nicotiana benthamiana leaves expressing AtRLP23. We then created AtRLP23 transgenic Shanxin lines and confirmed that the heterologous expression of AtRLP23 conferred on transgenic Shanxin the ability to respond to one nlp24 of each fungal pathogen. Consistently, infection assays with MbMo or Ea showed obviously lower levels of disease symptoms and significantly inhibited the growth of fungi on the transgenic poplar compared with that in wild‐type poplar. Overall, our results indicated that the heterologous expression of AtRLP23 allowed transgenic Shanxin to generate a PTI response to nlp24s, resulting in increased broad‐spectrum fungal disease resistance.     

Can size distributions of European lake fish communities be predicted by trophic positions of their fish species?

An organism''s body size plays an important role in ecological interactions such as predator–prey relationships. As predators are typically larger than their prey, this often leads to a strong positive relationship between body size and trophic position in aquatic ecosystems. The distribution of body sizes in a community can thus be an indicator of the strengths of predator–prey interactions. The aim of this study was to gain more insight into the relationship between fish body size distribution and trophic position in a wide range of European lakes. We used quantile regression to examine the relationship between fish species'' trophic position and their log‐transformed maximum body mass for 48 fish species found in 235 European lakes. Subsequently, we examined whether the slopes of the continuous community size distributions, estimated by maximum likelihood, were predicted by trophic position, predator–prey mass ratio (PPMR), or abundance (number per unit effort) of fish communities in these lakes. We found a positive linear relationship between species'' maximum body mass and average trophic position in fishes only for the 75% quantile, contrasting our expectation that species'' trophic position systematically increases with maximum body mass for fish species in European lakes. Consequently, the size spectrum slope was not related to the average community trophic position, but there were negative effects of community PPMR and total fish abundance on the size spectrum slope. We conclude that predator–prey interactions likely do not contribute strongly to shaping community size distributions in these lakes.     

叶脉结构与功能及其对叶片经济谱的影响

叶脉由贯穿于叶肉内部的维管组织及其外围机械组织构成,多样化的脉序及网络结构使叶脉系统发生变异和功能分化。该文综述了叶脉系统结构与功能的最新研究进展。通过聚焦叶脉分级系统的结构与功能及其在叶片经济谱(LES)中的重要性,解释叶脉性状与其它叶片功能性状之间的关系及机制。不同等级叶脉在机械支撑与水分运输方面存在功能分化,其中1–3级粗脉在维持叶片形状和叶表面积以及物理支撑方面发挥重要作用,有利于维持叶片最大受光面积;4级及以上细脉具有水分调节功能,它们与气孔相互协调,影响叶片水分运输、蒸腾散热和光合作用速率。叶片生长过程与叶脉发育的动态变化模式决定叶脉密度,并影响叶脉密度与叶片大小之间的关系:叶面积与粗脉密度呈显著负相关,与粗脉直径呈显著正相关,而与细脉密度无关。与叶脉性状相关的叶片经济谱框架模型预测,叶脉密度较高的叶片寿命短、比叶重较小,叶片最大碳同化速率、代谢速率以及资源获取策略潜力较高。