Studies on the Piscicidal Components of Justicia Hayatai var. decumbens

Justicidin A, C₂₂H₁₈O₇, mp 263°C and B, C₂₁H₁₆O₆, mp 240°C were isolated as fish-killing components from Justicia Hayatai var. decumbens. The piscicidal activities of both compounds were demonstrated to be as strong as rotenone and about ten times stronger than that of pentachlorophenol.     

Unpaved roads alter foraging patterns of the leafcutter ant Atta colombica

Leaf cutting ants are dominant herbivores and influential ecosystem engineers in the Neotropics. It has been suggested that habitat disturbances alter the architecture of foraging trail systems for colonies in their vicinity; however, the evidence remains scarce. In this study we investigated the effect of unpaved roads dissecting tropical lowland forest habitat on the structure of leafcutter foraging trail systems and foraging effort. We mapped trail systems for 16 mature Atta colombica colonies located at different distances from unpaved roads. Our results suggest exploitation of unpaved roads by leafcutters provides favorable foraging conditions, causing significant differences in foraging trail structure.     

密码子使用偏性量化方法研究综述

在基因组学水平上研究密码子使用偏性模式、成因并分析进化过程中的选择压力在基因组学研究中有重要意义。文章概述了目前提出的密码子使用偏性的量化方法及实现原理。目前研究发现：有些量化密码子偏性的方法受高表达基因参考数据集未完全注释的限制,不同密码子位置对变异和选择的影响不同,以及不同密码子位置处GC含量和嘌呤含量的贡献不同。由此展望密码子偏性量化方法发展方向为：需要设计不需要相关参考基因集合先验知识的密码子使用偏性量化方法;考虑不同位置处背景核苷酸组成的密码子使用偏性的量化方法;同时考虑基因表达水平的密码子使用偏性量化方法。最后,归纳了目前可用的密码子使用偏性的量化工具和数据库。     

Temporal variation in extrafloral nectar secretion in different ontogenic stages of the fruits of Alibertia verrucosa S. Moore (Rubiaceae) in a Neotropical savanna

In this study, we evaluate the temporal variation in extrafloral nectaries (EFNs) secretion in different ontogenic stages of Alibertia verrucosa (Rubiaceae) fruits in a Neotropical savanna. We observe greater nectar secretion rate in fruits of intermediate size compared with young or ripe fruit, indicating that they are possibly more protected by ants. In addition, the nectar secretion was higher at night, a pattern that could be associated with an increase of herbivore pressure and water stress during the daylight hours. In fact, due to the high temperature and low humidity during the day in savannas, most herbivores display strong nocturnal activity, and plants can avoid nectar secretion in this period. Our results indicate that A. verrucosa can change the ants' attraction according to EFN secretion during the ontogenic stages of the fruits, probably secreting more nectar when the biotic defense are more necessary for the protection of the fruits and the plant as a whole.     

Within-colony feeding selectivity by a corallivorous reef fish: foraging to maximize reward?

Foraging theory predicts that individuals should choose a prey that maximizes energy rewards relative to the energy expended to access, capture, and consume the prey. However, the relative roles of differences in the nutritive value of foods and costs associated with differences in prey accessibility are not always clear. Coral‐feeding fishes are known to be highly selective feeders on particular coral genera or species and even different parts of individual coral colonies. The absence of strong correlations between the nutritional value of corals and prey preferences suggests other factors such as polyp accessibility may be important. Here, we investigated within‐colony feeding selectivity by the corallivorous filefish, Oxymonacanthus longirostris, and if prey accessibility determines foraging patterns. After confirming that this fish primarily feeds on coral polyps, we examined whether fish show a preference for different parts of a common branching coral, Acropora nobilis, both in the field and in the laboratory experiments with simulated corals. We then experimentally tested whether nonuniform patterns of feeding on preferred coral species reflect structural differences between polyps. We found that O. longirostris exhibits nonuniform patterns of foraging in the field, selectively feeding midway along branches. On simulated corals, fish replicated this pattern when food accessibility was equal along the branch. However, when food access varied, fish consistently modified their foraging behavior, preferring to feed where food was most accessible. When foraging patterns were compared with coral morphology, fish preferred larger polyps and less skeletal protection. Our results highlight that patterns of interspecific and intraspecific selectivity can reflect coral morphology, with fish preferring corals or parts of coral colonies with structural characteristics that increase prey accessibility.     

Temperature dependence of UV radiation effects in Arctic and temperate isolates of three red macrophytes

The temperature dependence of UV effects was studied for Arctic and temperate isolates of the red macrophytes Palmaria palmata, Coccotylus truncatus and Phycodrys rubens. The effects of daily repeated artificial ultraviolet B and A radiation (UVBR: 280–320?nm, UVAR: 320–400?nm) treatments were examined for all isolates at 6, 12 and 18?°C by measuring growth, optimal quantum yield of PSII (F_v/F_m) and cyclobutane-pyrimidine dimer (CPD) accumulation. Furthermore, possible ecotypic differences in UV sensitivity between Arctic and temperate isolates were evaluated. Large species-specific differences in UV sensitivity were observed for all parameters: the lower subtidal species C. truncatus and P. rubens were highly sensitive to the UV treatments, whereas P. palmata, which predominantly occurs in the upper subtidal zone, was not affected by these treatments. Only minor differences were found between Arctic and temperate isolates, suggesting that no differences in UV sensitivity have evolved in these species. Relative growth rates were temperature-dependent, whereas species-specific UV effects on growth rates were relatively independent of temperature. In contrast, the species-specific decrease in F_v/F_m and its subsequent recovery were temperature-dependent in all species. UV effects on F_v/F_m were lower at 12 and 18?°C compared with 6?°C. In addition, UV effects on F_v/F_m decreased in the course of the experiment at all temperatures, indicating acclimation to the UV treatments. CPDs accumulated during the experiment in both isolates of P. rubens, whereas CPD concentrations remained low for the other two species. CPD accumulation appeared to be independent of temperature. The results suggest that summer temperatures occurring in temperate regions facilitate repair of UV-induced damage and acclimation to UV radiation in these algae compared with Arctic temperatures. Because the differences in UV effects on F_v/F_m, growth and CPD accumulation were relatively small over a broad range of temperatures, it was concluded that the influence of temperature on UV effects is small in these species.     

Statistical analysis of pentose phosphate pathway genes from eubacteria and eukarya reveals translational selection as a major force in shaping codon usage pattern

Comparative analysis of metabolic pathways among widely diverse species provides an excellent opportunity to extract information about the functional relation of organisms and pentose phosphate pathway exemplifies one such pathway. A comparative codon usage analysis of the pentose phosphate pathway genes of a diverse group of organisms representing different niches and the related factors affecting codon usage with special reference to the major forces influencing codon usage patterns was carried out. It was observed that organism specific codon usage bias percolates into vital metabolic pathway genes irrespective of their near universality. A clear distinction in the codon usage pattern of gram positive and gram negative bacteria, which is a major classification criterion for bacteria, in terms of pentose phosphate pathway was an important observation of this study. The codon utilization scheme in all the organisms indicates the presence of translation selection as a major force in shaping codon usage. Another key observation was the segregation of the H. sapiens genes as a separate cluster by correspondence analysis, which is primarily attributed to the different codon usage pattern in this genus along with its longer gene lengths. We have also analyzed the amino acid distribution comparison of transketolase protein primary structures among all the organisms and found that there is a certain degree of predictability in the composition profile except in A. fumigatus and H. sapiens, where few exceptions are prominent. In A. fumigatus, a human pathogen responsible for invasive aspergillosis, a significantly different codon usage pattern, which finally translated into its amino acid composition model portraying a unique profile in a key pentose phosphate pathway enzyme transketolase was observed.     

植物光合作用模型参数的温度依存性研究进展

综述了植物光合作用与温度响应模型研究的进展,围绕光合作用生化模型的4个主要参数：胞间CO₂浓度、RuBP最大碳同化速率(V_{c max})的活化能、RuBP最大再生速率(J_max)的活化能和J_max/V_{c max},讨论了影响光合作用 温度响应曲线的内在机理.随着生长温度的升高,所有物种的V_{c max}活化能均呈增加趋势,而其他参数的变化因物种不同而存在明显差异,说明V_{c max}的活化能可能是决定光合作用温度依存性的首要参数.最后分析了研究中存在的问题并提出研究展望,认为应整合叶片与群落水平的光合作用模型,从叶面积、太阳辐射、冠层结构、冠层小气候和光合能力等方面研究植物群落对全球变化的响应机理.这对于人们理解和准确估算植物生长、群落碳收支和生态系统初级生产力具有重要意义.     

甘油脱氢酶基因在大肠杆菌中的密码子优化表达

[目的]利用密码子优化技术,提高甘油脱氢酶基因gldA在大肠杆菌中的表达水平.[方法]针对gldA起始密码子下游区域,优先选择AT含量最高的同义密码子,从而在不改变氨基酸序列的前提下,提高该区域的AT含量.利用大引物PCR的方法对野生型gldA-WT进行定点突变,获得优化型基因gldA-4,与pET-32a(+)连接后...