Marine prey processed with stone tools by burmese long‐tailed macaques (Macaca fascicularis aurea) in intertidal habitats

Long‐tailed macaques (Macaca fascicularis) feed opportunistically in many habitats. The Burmese subspecies (M. f. aurea) inhabits coastal areas in southwestern Thailand and Myanmar, and some of their populations have adapted lithic customs for processing encased foods in intertidal habitats. We investigated the diet of such macaques in Laemson National Park, Thailand, and identified the variety of foods they processed with stones. We conducted 36 shore surveys to study tool sites following feeding activity, during which we counted the minimum number of individual (MNI) food items found at each site. We identified 47 food species (43 animals and four plants), from 37 genera. We counted 1,991 food items during surveys. Nearly all were mollusks (n = 1,924), with the small remainder primarily consisting of crustaceans and nuts. The two most common foods, rock oysters (Saccostrea cucullata; n = 1,062) and nerite snails (Nerita spp.; n = 538), composed 80.2% of our sample. Four prey species comprised 83.2% of the sample (MNI = 1,656), S. cucullata (n = 1,062), Nerita chamaeleon (n = 419), Thais bitubercularis (n = 95), and Monodonta labio (n = 80). Macaques selected a wide variety of foods. However, they heavily concentrated on those that were abundant, easy to access, and sufficiently sized. The Burmese long‐tailed macaque stone‐processed diet, which focuses on intertidal marine prey, differs from Sapajus and Pan, who use stones primarily for encased nuts and fruits. In terms of diversity of foods exploited, coastal stone‐based predation by macaques resembles the diet of coastal‐foraging humans (Homo sapiens sapiens). Am J Phys Anthropol, 2012. © 2012 Wiley Periodicals, Inc.     

The role of terrestriality in promoting primate technology

"Complex technology" has often been considered a hallmark of human evolution. However, recent findings show that wild monkeys are also capable of habitual tool use. Here we suggest that terrestriality may have been of crucial importance for the innovation, acquisition, and maintenance of "complex" technological skills in primates. Here we define complex technological skills as tool-use variants that include at least two tool elements (for example, hammer and anvil), flexibility in manufacture or use (that is, tool properties are adjusted to the task at hand), and that skills are acquired in part by social learning. Four lines of evidence provide support for the terrestriality effect. First, the only monkey populations exhibiting habitual tool use seem to be particularly terrestrial. Second, semi-terrestrial chimpanzees have more complex tool variants in their repertoire than does their arboreal Asian relative, the orangutan. Third, tool variants of chimpanzees used in a terrestrial setting tend to be more complex than those used exclusively in arboreal contexts. Fourth, the higher frequency in tool use among captive versus wild primates of the same species may be attributed in part to a terrestriality effect. We conclude that whereas extractive foraging, intelligence, and social tolerance are necessary for the emergence of habitual tool use, terrestriality seems to be crucial for acquiring and maintaining complex tool variants, particularly expressions of cumulative technology, within a population. Hence, comparative evidence among primates supports the hypothesis that the terrestriality premium may have been a major pacemaker of hominin technological evolution.     

The real females of human evolution

When “woman‐the‐gatherer” was first proposed as a counter to “man‐the‐hunter,” we were only beginning to understand the many faces of primate females. In ensuing decades we have learned about the skills and talents of female chimpanzees in tool using, hunting, and transmitting behaviors from one generation to the next as teachers, and across space as newcomers to neighboring communities. The perspective of evolutionary time highlights the continuity of female lives from the origin of mammals to the origin of Homo sapiens. The combination of behavioral, fossil, and archeological information aid in reconstructing key ingredients acquired by females along the way that contributed to the success of our species. © 2012 Wiley Periodicals, Inc.     

MATLAB 7.X 生物信息工具箱的应用-- 专用分析工具（ 六）*

序列分析可以获取蕴藏在简单序列中的生物信息,是生物信息分析的基础。通过生物大分子序列差异分析构建的系统树则可为我们提供可视化的物种间的进化关系。MATLAB7.X生物信息工具箱包含了几个图形用户界面设计的专用分析工具,这些专用分析工具交互性好,易于使用。借助于这些分析工具,用户不仅可以对基因序列进行分析查看并能进行相对应的氨基酸序列分析,还可以方便快捷地构建系统发育树。即使用户不会编程也可以进行序列分析和系统发育分析的研究,大大地提高了分析的效率。本文详细介绍了序列分析工具Seqtool和系统发育分析工具Phytreetool在序列分析及系统发育树构建方面的应用,所有操作方便快捷,分析结果可视化程度高。     

Context-dependent tool use in New Caledonian crows

Humans and chimpanzees both exhibit context-dependent tool use. That is, both species choose to use tools when food is within reach, but the context is potentially hazardous. Here, we show that New Caledonian crows used tools more frequently when food was positioned next to a novel model snake than when food was positioned next to a novel teddy bear or a familiar food bowl. However, the crows showed no significant difference in their neophobic reactions towards the teddy bear and the model snake. Therefore, the crows used tools more in response to a risky object resembling a natural predator than to a less-threatening object that provoked a comparable level of neophobia. These results show that New Caledonian crows, like humans and chimpanzees, are capable of context-dependent tool use.     

Interactions between TIME and PIN could play a role in the system that controls the duration of diapause development and synchronization with seasonal cycles in the silkworm Bombyx mori*

The significance of winter cold in the termination of diapause was investigated with regards to TIME and PIN in eggs of the silkworm Bombyx mori. TIME (time interval measuring enzyme) is an ATPase that can measure time intervals by exhibiting a transitory burst of activation of the enzyme in accordance with diapause development, which requires cold for resumption of embryonic development in the silkworm. The possible timer function of TIME comprises a built‐in mechanism in the protein structure. TIME is a metallo‐glycoprotein consisting of 156 amino acid residues with a unique sequence in the N‐terminal region to which a sugar chain is attached. PIN (peptidyl inhibitory needle) inhibits the ATPase activity of TIME. PIN is not a simple enzyme inhibitor, but holds the timer by forming a time‐regulatory complex with TIME. The carbohydrate moiety of TIME is essential for the assembly of a high‐affinity PIN‐binding site within the timer motif of the TIME structure. The binding interaction between TIME and PIN was much tighter (nearly 1000 times) at 25°C than that at 4°C, as measured by fluorescence polarization. Because the logEC₅₀ at 4°C was approximately 7 nmol/L, PIN must dissociate from TIME at the physiological concentration of TIME in eggs in the winter cold. Based on the results of our study, we propose that the dissociation of the TIME–PIN complex in the winter cold cues a series of conformational changes of TIME, ultimately reaching the active form of ATPase which in turn causes the completion of diapause development and initiates new developmental programs.     

phylochipanalyser - a program for analysing hierarchical probe sets

The recent introduction of phylochips that contain molecular probes facilitates environmental microbial identification in a single experiment without previous cultivation. A set of probes recognizing species at different taxonomic levels is denoted as a hierarchical set. Application of hierarchical probe sets on a DNA microarray allows the assessment of biodiversity with different resolutions. It significantly increases the robustness of the results retrieved from phylochip experiments because of the possible consistency checks of hybridization across different taxonomic levels. Here, we present a computer program, phylo-chipanalyser, for the hierarchy editing and the evaluation of phylochip data generated from hierarchical probe sets.