Structure,mechanism and evolution of chloroplast transfer RNA processing systems

Chloroplasts of land plants have an active transfer RNA processing system, consisting of an RNase P-like 5 endonuclease, a 3 endonuclease, and a tRNA:CCA nucleotidyltransferase. The specificity of these enzymes resembles more that of their eukaryotic counterparts than that of their cyanobacterial predecessors. Most strikingly, chloroplast RNase P activity almost certainly resides in a protein, rather than in an RNA protein complex as in Bacteria, Archaea, and Eukarya. The chloroplast enzyme may have evolved from a preexisting chloroplast NADP-binding protein. Chloroplast RNase P cleaves pre-tRNA by a reaction mechanism in which at least one of the Mg²⁺ ions utilized by the bacterial ribozyme RNase P is replaced by an amino acid side chain.Abbreviations pre-tRNA precursor to tRNA - pCp cytidine 5, 3-bisphosphate - IC₅₀ inhibitor concentration giving 50% inhibition - GAPDH glyceraldehyde 3-phosphate dehydrogenase     

Crystallization and preliminary X-ray analysis of fructose 6-phosphate, 2-kinase:fructose 2,6-bisphosphatase.

Diffraction-quality crystals of the bifunctional enzyme fructose 6-phosphate, 2-kinase:fructose 2,6-bisphosphatase from rat testis have been obtained. The crystals were grown in the presence of ATP gamma S, fructose 6-phosphate, the detergent n-octylglucoside, and the precipitant polyethylene glycol 4000. The crystals have the symmetry of the trigonal space group P31/221 with a = b = 83.0 A and c = 130.6 A. Flash-frozen crystals diffract to beyond 2.2 A, and native data have been collected.     

Sulfur cycling in forests

Sulfur is essential for the production of certain amino acids in plants. As amino acid sulfur is the major form of sulfur in trees, there is a strong relationship between organic S and organic N in tree tissue. Sulfur deficiencies occur in parts of southeastern Australia and northwestern North America, remote from pollutant inputs. Since bilogical S requirements of forests are modest (< 5 kg · ha^–1 yr^–1 for net vegetative increment), however, atmospheric S inputs in polluted regions (10–80 kg · ha^–1 yr^–1 ) often exceed not only the forest ecosystem S requirement but also its ability to biologically accumulate S. There is some increase in the SO^2– ₄–S content of forest vegetation in response to elevated atmospheric S inputs, but this capacity is apparently easily saturated. Soil SO^2–2 ₄adsorption is often the dominant feature of S cycling in polluted ecosystems and often accounts for net ecosytem S accumulations.Contribution from a symposium on the role of sulfur in ecosystem processes held August 10, 1983, at the annual meeting of the A.I.B.S., Grand Forks, ND; Myron Mitchell, convenor.     

The utilization of molecular hydrogen by the blue-green alga Anabaena cylindrica

The blue-green alga Anabaena cylindrica is found to consume molecular hydrogen in a hydrogenase dependent reaction. This hydrogen uptake proceeds in the dark and is strictly dependent on oxygen, thus representing a Knallgas reactions. Its rate is almost as high as that of the endogenous respiration in Anabaena. Studies with inhibitors reveal that hydrogen is utilized via the complete respiratory chain providing additional energy for the alga. CO plus C₂H₂ completely block the Knallgas reaction which explains the previously reported considerable increase in the total H₂ formation representing the difference between the nitrogenase-dependent H₂-evolution and the reutilization of the gas catalysed by the hydrogenase in intact Anabaena.H₂ is able to support the C₂H₂-reduction in the dark in a reaction again strictly dependent on oxygen. Moreover, H₂ is also consumed in experiments carried out under far red light and in the presence of dichlorophenyl-dimenthyl-urea (DCMU) where the energy for nitrogen fixation is no longer provided by respiration but by cyclic photophosphorylation. Under these conditions, H₂ is found to supply electrons for the formation of C₂H₄ from C₂H₂ in a reaction no longer dependent on the presence of oxygen. Moreover, in these experiments, the presence of H₂ stabilizes the C₂H₂-reduction activity against the deleterious effect of oxygen.Thus, this communication provides evidence for a triplicate function of the H₂-uptake catalysed by hydrogenase in intact Anabaena which is (a) to provide energy by the Knallgas reaction, (b) to supply reducing equivalents for nitrogenase, (c) to protect nitrogenase from damage by oxygen.Abbreviations DCMU N-(3,4-dichlorophenyl)N,N-dimethylurea - DNP 2-4-dinitrophenol - FCCP carbonylcyanid-p-trifluormethoxyphenyl-hydrazone(=p-CF₃-CCP) - Chl chlorophyll     

Biotechnology applied to mining of metals

The present review describes the advances achieved during the last two years in the application of biotechnological principles in the extraction of metals from ores and minerals. Despite the fact that this branch of science is very young and many details are yet to be understood, the microbes are applied at commercial levels especially for the extraction of copper and uranium from low-grade ores. The technique is far from being developed to its full potential and it is generally recognized to be a technology of the future. The studies involved are complex and multidisciplinary in nature.     

涉及光疗机制的生物光化学

本文对光生物和光化学的定义,反应机制的类型和光敏化作用等做了阐述。下面例举几个光疗的成果 1.光疗牛皮癣 经常使用的8-甲氧基补骨脂素在UVA的照射下,从基态被激发到三重态。它主要和DNA中的胸腺嘧啶,其次和色氨酸进行光环合加成,形成交联,阻止DNA和RNA的合成,抑制具过度增生 2.血卟啉衍生物(HPD)治癌 HPD有定位于癌组织的能力和光动力作用,可推断病人体内癌部位。 讨论了HPD的光疗机制,和酞菁相比,有各自的优缺点。 3.竹红菌素 主要治疗妇女外阴白色病变和疤痕疙瘩,抑制癌细胞生长。 讨论了竹红菌甲素和乙素及它们的氧化物的结构和活性。 在大于510nm的光照射下,也可抑制癌细胞的生长。列举了竹红菌素的优缺点。     

The Pro to glycine mutation of staphylococcal nuclease simplifies the unfolding—folding kinetics

Kinetics of unfolding and refolding of a staphylococcal nuclease mutant, in which Pro¹¹⁷ is replaced by glycine, have been investigated by stopped-flow circular dichroism, and the results are compared with those for the wild-type protein. In contrast to the biphasic unfolding of the wild-type nuclease, the unfolding of the mutant is represented by a single-phase reaction, indicating that the biphasic unfolding for the wild-type protein is caused by cis-trans isomerization about the prolyl peptide bond in the native state. The proline mutation also simplifies the kinetic refolding. Importance of the results in elucidating the folding mechanism is discussed.     

Decomposition and nutrient liberation rates of plant material in the Parana medio River (Argentina)

The degradation of plant material was studied in order to obtain degradation coefficients and nutrient release kinetics of the vegetation that will be submerged during the filling of the future Parana Medio man-made lake. A group of 13 plant species representative of the whole vegetation of the area were chosen.The plant samples (submerged at 2.5–4 m in the Setubal lagoon), were periodically analyzed during 97 days. The experimental data were fitted to an exponential decomposition model. The plants were classified according to their velocities of degradation into three groups: fast (K>0.01), mean (0.01>K>0.005) and slow (K<0.005). The curves of release of P, N, Ca, Mg, Na and K in function of time are presented and discussed.