Crystal structure of the Y52F/Y73F double mutant of phospholipase A2: increased hydrophobic interactions of the phenyl groups compensate for the disrupted hydrogen bonds of the tyrosines.

The enzyme phospholipase A2 (PLA2) catalyzes the hydrolysis of the sn-2 ester bond of membrane phospholipids. The highly conserved Tyr residues 52 and 73 in the enzyme form hydrogen bonds to the carboxylate group of the catalytic Asp-99. These hydrogen bonds were initially regarded as essential for the interfacial recognition and the stability of the overall catalytic network. The elimination of the hydrogen bonds involving the phenolic hydroxyl groups of the Tyr-52 and -73 by changing them to Phe lowered the stability but did not significantly affect the catalytic activity of the enzyme. The X-ray crystal structure of the double mutant Y52F/Y73F has been determined at 1.93 A resolution to study the effect of the mutation on the structure. The crystals are trigonal, space group P3(1)21, with cell parameters a = b = 46.3 A and c = 102.95 A. Intensity data were collected on a Siemens area detector, 8,024 reflections were unique with an R(sym) of 4.5% out of a total of 27,203. The structure was refined using all the unique reflections by XPLOR to a final R-factor of 18.6% for 955 protein atoms, 91 water molecules, and 1 calcium ion. The root mean square deviation for the alpha-carbon atoms between the double mutant and wild type was 0.56 A. The crystal structure revealed that four hydrogen bonds were lost in the catalytic network; three involving the tyrosines and one involving Pro-68. However, the hydrogen bonds of the catalytic triad, His-48, Asp-99, and the catalytic water, are retained. There is no additional solvent molecule at the active site to replace the missing hydroxyl groups; instead, the replacement of the phenolic OH groups by H atoms draws the Phe residues closer to the neighboring residues compared to wild type; Phe-52 moves toward His-48 and Asp-99 of the catalytic diad, and Phe-73 moves toward Met-8, both by about 0.5 A. The closing of the voids left by the OH groups increases the hydrophobic interactions compensating for the lost hydrogen bonds. The conservation of the triad hydrogen bonds and the stabilization of the active site by the increased hydrophobic interactions could explain why the double mutant has activity similar to wild type. The results indicate that the aspartyl carboxylate group of the catalytic triad can function alone without additional support from the hydrogen bonds of the two Tyr residues.     

The influence of habitat use and foraging on the replacement of one introduced wasp species by another in New Zealand

Abstract.

• 1 New Zealand was colonized by the German wasp, Vespula germanica (F.), in the 1940s and it subsequently became established throughout the country. The common wasp, V.vulgaris (L), colonized in the late 1970s and is still spreading.
• 2 The common wasp has replaced the German wasp in some habitats in New Zealand. Samples from a nationwide postal survey indicate that the common wasp is now the more abundant species in honeydew beech forests (Nothofagus spp.), and to a lesser extent in other native forests. The German wasp is still the more abundant wasp in rural areas (excluding forest). The two species are at present co-dominant in urban areas, although this may be a transient phase.
• 3 In honeydew beech forest the two species show different foraging patterns that provide the potential for local coexistence. Although both species are generalist feeders, the German wasp is more commonly found foraging for protein amongst the forest litter, whereas the common wasp forages more on shrubs and tree saplings. Despite this difference, the common wasp can still replace the German wasp in honeydew beech forest within a few years of invasion.
• 4 In honeydew beech forests in which the German wasp is the more abundant species it dominates honeydew trunks (sugar resource), whereas the common wasp dominates honeydew trunks in areas where it is the more abundant species. The change from German to common wasp domination of honeydew trunks is more rapid than the change in dominance in other microhabitats. Aggressive interactions may be taking place on this high quality, potentially defensible sugar resource.

     

Mechanisms of embryonic drift in the amphidromous goby,Rhinogobius brunneus

Synopsis We tested the reactions of free embryos of the amphidromous goby, Rhinogobius brunneus, to light under both artificial and ambient conditions along streams in which their downstream migration occurs. The embryos showed a positive phototaxis to 500 1ux light but a negative response to light of more than 5000 lux. They were able to swim at 1.54 cm sec^–1 t in still water and showed positive rheotaxis, but their swimming ability was not sufficient to allow active movement in rapids. Ambient natural light conditions varied among locations in relation to local topographical features. The variation in the diel periodicity of their migration could be explained by the interaction between behavioral reactions of embryos and environmental factors along river courses.     

Photosynthetic characteristics of the submerged macrophyte Ceratophyllum demersum

The photosynthetic and growth characteristics of Ceratophyllum demersum L. were investigated under laboratory conditions which simulated those encountered in the plants' normal environment. The carbon fixation rate of C. demersum measured with ¹⁴C at light and carbon saturation at pH 8.0 was 4.48 mg C (g ash-free dry weight)⁻¹ h⁻¹. It was lower at pH 6.5 than at pH 8.0. The light use efficiencies in quiescent plants and actively growing plants were 6.3 and 8.7 × 10⁻⁹ kg CO₂ J⁻¹, respectively, with corresponding maximum photosynthetic rates of 2.67 and 4.36 mg C (g ash-free dry weight)⁻¹ h⁻¹. Photorespiration in actively growing plants consumed 24% of the carbon fixed. Incubation with DCMU demonstrated that about one-third was refixed. The optimum temperature for carbon fixation was 25°C. The C₃-photosynthetic pathway was the main operational route as indicated by the early photosynthetic products (largely C₃-acids) and the absence of Krantz anatomy and the chlorophyll a:b ratio (2.7). The maximum relative growth rates ranged from 0.025 to 0.041 g ash-free dry weight (g ash-free dry weight)⁻¹ day⁻¹ in the field (Lake Vechten, 1 to 3 m depth classes).     

单纯疱疹病毒Ⅱ型DNA克隆片段的限制酶切分析

本文采用10种限制性内切核酸酶分析了单纯疱疹病毒Ⅱ型(HSV-2)335株DNA BglⅡ8种克隆片段共12个重组质粒。发现了HSV-2 DNA L链末端区域有限制酶切位点的变异并对HSV-2 DNA单一序列区域和末端重复区域的稳定性进行了初步讨论。本文应用末端标记技术和末端杂交分析法对编码糖蛋白D的HSV-2 DNA BglⅡL片段和含有形态学转化基因的HSV-2DNA BglⅡN片段进行了详细的限制性内切核酸酶物理图谱分析。     

Predation byCheilomenes vicina [Coleoptera: Coccinellidae] on the cowpea aphid,Aphis craccivora [Homoptera: Aphididae]: Effect of prey stage and density

Consumption of larvae and females ofAphis craccivora Koch by 1st and 4th larvae and adults ofCheilomenes vicina (Muls.) was studied under fluctuating temperature (24–30°C). The early aphid instars were consumed in significantly greater numbers than later instars and females. The feeding rates ofC. vicina were significantly positively correlated with the population density of prey. The number of prey consumed daily by each predator stage tested, increased more steeply at lower than at higher prey densities, exhibiting thus the type 2 functional response

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Résumé Consommation des larves et des ♀ d'Aphis craccivora par les11^e stades, les 4^e stades et les adultes deCheilomenes vicina a été étudiée à une température variant de 24 à 30°C. Les jeunes stades du puceron sont consommés en nombre plus grand significativement que les derniers stades et les ♂. Les taux d'alimentation deC. vicina manifestent une corrélation hautement significative avec la densité de population de la proie. Le nombre de proies consommées quotidiennement par chaque stade considéré du prédateur augmentait plus brusquement aux faibles qu'aux fortes densités de proies, manifestant ainsi chez le prédateur le type 2 de réponse fonctionnelle.

     

Trypanosoma brucei: analysis of relapsing populations in sensitive and resistant breeds of cattle

The clone DiTat 1.1 of Trypanosoma brucei brucei was injected into four bovids, and clones obtained from successive waves of parasitemia were used to study the expressed variant-specific surface glycoprotein repertoire. Twenty-four clones were obtained which could be classified into 12 different variable antigen types, in addition to the clone injected, using agglutination or immunofluorescence with monospecific antisera. The variable surface glycoproteins of the 25 clones were extracted using the detergent octyl-beta-D-glucopyranoside in the presence of the protease inhibitor, N-cbz-L-phenylalaninechloromethylketone. The molecular weights varied from 52,000 to 69,000 and the pI from 5.0 to 8.8. The virulence of 14 clones representing 13 variable antigen types was ascertained in mice. The mean survival time ranged from 20.5 to 43.0 days. Clones isolated from early peaks of parasitemia in the bovid were the most virulent while clones derived from later peaks were less virulent. It seems that organisms of diminishing virulence appear in bovids, leading to self-cure of the disease. All clones were sensitive to human serum in a blood infectivity inhibition test. Antibody against all virulent clones appeared in 20 cattle (10 Zebus, 10 Baoulés) which had been injected with T. brucei DiTat 1.1. There was no evidence for parasites of high or low virulence being preferentially expressed in resistant or sensitive hosts.     

Expression of A and B Types of Monoamine Oxidase in Differentiated Neuroblastoma Hybrid Cells

The total activities of monoamine oxidase (MAO) and the ratio of type B/type A activities were determined in mouse neuroblastoma N1E-115 cells, and in NX31T and NG108-15 hybrid cells derived from mouse neuroblastoma X rat sympathetic ganglion hybrid or mouse neuroblastoma X rat glioma hybrid cells. N1E-115 and NX31T cells possessed type A activities exclusively, although NG108-15 cells showed both type A (65-90%) and type B (10-35%) MAO activities. The activity of type A MAO in NX31T and N1E-115 cells was relatively constant during culturing periods in the presence or absence of dibutyryl cyclic AMP (Bt2cAMP), whereas total MAO activity and the ratio of type B MAO/type A MAO in NG108-15 cells increased as a function of culture periods. Prostaglandin E1 (PGE1) and theophylline, the best known combination to increase intracellular cyclic AMP content of NG108-15 cells, caused similar increases of MAO and of the type B/type A ratio in NG108-15 cells. The results suggest that MAO activity and expression of MAO B activity are regulated in NG108-15 cells in a cyclic AMP-dependent manner.     

Photosynthesis,water use and growth of a C4 grass stand at high CO2 concentration

Leaf photosynthesis rate of the C₄ species Paspalum plicatulum Michx was virtually CO₂-saturated at normal atmospheric CO₂ concentration but transpiration decreased as CO₂ was increased above normal concentrations thereby increasing transpiration efficiency. To test whether this leaf response led growth to be CO₂-sensitive when water supply was restricted, plants were grown in sealed pots of soil as miniature swards. Water was supplied either daily to maintain a constant water table, or at three growth restricting levels on a 5-day drying cycle. Plants were either in a cabinet with normal air (340 mol (CO₂) mol^-1 (air)) or with 250 mol mol^-1 enrichment. Harvesting was by several cycles of defoliation.With abundant water supply high CO₂ concentration did not cause increased growth, but it did not cause an increase in growth over a wide range of growth-limiting water supplies either. Only when water supply was less than 30–50% of the amount used by the stand with a water-table was there evidence that dry weight growth was enhanced by high CO₂. In addition, with successive regrowth, the enhancing effect under a regime of minimal water allocations, became attenuated. Examination of leaf gas exchange, growth and water use data showed that in the long term stomatal conductance responses were of little significance in matching plant water use to low water allocation; regulation of leaf area was the mechanism through which consumption matched supply. Since high CO₂ effects operate principally via stomatal conductance in C₄ species, we postulate that for this species higher CO₂ concentrations expected globally in future will not have much effect on long term growth.