三江平原不同湿地类型土壤活性有机碳组分及含量差异

土壤活性有机碳对土壤干扰的反应较快,是土壤有机碳早期变化的敏感性指标。近50年来,三江平原湿地土壤有机碳库受农事活动影响较大。为了探讨不同湿地类型土壤活性有机碳主要组分土壤可溶性有机碳(Dissolved organic carbon,DOC)、微生物量碳(Microbial biomass carbon,MBC)和易氧化有机碳(Easily oxidized organic carbon,EOC)的分布差异及主要影响因子,选择了三江平原洪河自然保护区4种典型的湿地类型(小叶章+沼柳湿地、小叶章湿地、毛苔草湿地和芦苇湿地)为研究对象。分析了不同湿地类型土壤可溶性有机碳,微生物量碳和易氧化有机碳在0—30 cm土层内的分布特征和分配比例及其与有机碳、土壤养分和酶活性指标(蔗糖酶、纤维素酶和过氧化氢酶)之间的相关关系。结果表明:(1)4种湿地类型土壤DOC、MBC和EOC含量均随土层深度的增加而减少。不同湿地类型之间土壤活性有机碳含量在0—30 cm土层内存在显著性差异(P0.05),相对于长期淹水的毛苔草湿地和芦苇湿地而言,未淹水的小叶章+沼柳湿地和小叶章湿地具有较高的DOC,MBC和EOC含量。(2)土壤DOC、MBC和EOC占有机碳比例分别为0.27%—0.63%,1.27%—5.94%和19.63%—41.25%。土壤DOC所占比例呈先增后减的变化趋势,最大的比例均出现在10—20 cm。MBC所占比例在土壤剖面上则未表现出一致的变化规律,而EOC所占比例则随土层深度的增加而逐渐减少。(3)土壤DOC占SOC比例以小叶章湿地最高,MBC和EOC占SOC的比例则以小叶章+沼柳湿地最高。而长期淹水的毛苔草湿地和芦苇湿地则具有更低的DOC,MBC和EOC比例。(4)综合分析表明,4种湿地类型土壤DOC,MBC和EOC两两之间存在极显著相关性关系,它们除了与碳氮比相关性不显著外,与土壤有机碳,全氮,全磷养分和酶活性指标间相关性均达到极显著水平,尤其是与有机碳和全氮的相关性系数更高,此外DOC与纤维素酶,MBC与过氧化氢酶相关性更大。由此可见,土壤碳氮磷养分和酶活性是影响土壤活性有机碳组分分布的重要因素。     

外来植物火炬树(Rhus typhina L.)入侵对不同林型土壤性质的影响

生物入侵在世界范围内广泛发生,严重威胁当地生物多样性和生态系统稳定性。植物与土壤之间的相互作用在决定植物的竞争力以及分布格局中起着重要作用,是影响外来植物入侵力和生态系统可入侵性的一个重要方面。目前,有关研究已成为植被生态学与入侵生态学的研究热点。引自北美的外来植物火炬树(Rhus typhina L.)已成为我国北方主要的入侵木本植物之一。比较了火炬树单优林型、火炬树+刺槐(Robinia pseudoacacia L.)混交林、火炬树+麻栎(Quercus acutissima Carruth.)混交林、火炬树+银白杨(Populus alba L.)混交林4种不同林型的土壤微生物群落结构、土壤酶活性和土壤养分含量特征。结果表明:火炬树单优林土壤细菌、放线菌数量明显高于各混交林型,而真菌数量无显著差异;土壤酶活性方面,火炬树单优林脲酶、过氧化氢酶活性高,土壤磷酸酶活性低;火炬树的入侵显著提高了土壤全碳、全氮、全磷和硝态氮含量,同时明显降低了土壤铵态氮含量。硝态氮含量的增高可能与火炬树入侵造成土壤微生物群落组成变化、土壤硝化速率高有关;而火炬树入侵降低了土壤铵态氮含量,说明该物种可能更易于吸收利用铵态氮。以上研究结果表明,火炬树可以改变土壤生态系统的微生物群落组成和土壤酶活性并影响土壤相关营养元素循环,从而可能使其在与当地植物的竞争中获得优势,为自身的入侵创造有利条件。     

钾肥类型对菜心(菜薹)生长、细胞保护酶和内源激素的影响

为探讨钾肥类型对菜心(Brassica campestris L. ssp. chinensis var. utilis Tsen et Lee)的作用效应,研究了不同钾肥类型和水平对菜心生长、细胞保护酶和内源激素的影响。结果表明,氯化钾或硫酸钾处理可提高菜心叶片的POD 和CAT 活性、IAA 和GA₃ 含量,降低MDA 含量,提高菜薹产量。随着钾水平的提高,叶片IAA 和GA₃ 含量、POD 和CAT 活性以及菜薹质量明显提高,MDA 含量降低。当施钾90 kg hm^-2 时,叶片的GA₃ 和IAA 含量显著下降,而POD 活性和菜薹产量没有显著变化。在相同水平下,氯化钾与硫酸钾对植株生长、菜薹产量、叶片GA₃ 含量的影响不显著。当施钾0~90 kg hm^-2 时,氯化钾处理的叶片POD 活性显著高于硫酸钾处理;而施钾135~180 kg hm^-2 时,氯化钾处理的叶片POD 活性则显著低于硫酸钾处理。除了90 kg hm^-2 氯化钾处理的CAT 活性和45 kg hm^-2 氯化钾处理的MDA 含量低于硫酸钾处理以及90 kg hm^-2 和180 kg hm^-2 氯化钾处理的IAA 含量高于硫酸钾处理的外,相同水平氯化钾和硫酸钾处理的CAT 活性、MDA 含量和IAA 含量没有显著差异。可见,钾肥类型对菜心的活性氧代谢系统及内源激素含量有一定的影响,但氯化钾与硫酸钾对菜心的施用效果相当,生产上可采用氯化钾代替硫酸钾以节约肥料成本,K₂O 施用量以90 kg hm^-2 为宜。     

Improvement of antioxidant and defense properties of Tomato (var. Pusa Rohini) by application of bioaugmented compost

Nutrient management practices play a significant role in improving the nutritional quality of tomato. The present study deals with the evaluation of compost prepared using Effective Microorganisms (EM), on antioxidant and defense enzyme activities of Tomato (Lycopersicon esculentum). A field experiment with five treatments (control, chemical fertilizer and EM compost alone and in combination) was conducted in randomized block design. An increment of 31.83% in tomato yield was recorded with the combined use of EM compost and half recommended dose of chemical fertilizers (N₅₀P₃₀K₂₅ + EM compost at the rate of 5 t ha⁻¹). Similarly, fruit quality was improved in terms of lycopene content (35.52%), antioxidant activity (24–63%) and defense enzymes activity (11–54%), in tomatoes in this treatment as compared to the application of recommended dose of fertilizers. Soil microbiological parameters also exhibited an increase of 7–31% in the enzyme activities in this treatment. Significant correlation among fruit quality parameters with soil microbiological activities reveals the positive impact of EM compost which may be adopted as an eco-friendly strategy for production of high quality edible products.     

Exotic grasses and nitrate enrichment alter soil carbon cycling along an urban–rural tropical forest gradient

Urban areas are expanding rapidly in tropical regions, with potential to alter ecosystem dynamics. In particular, exotic grasses and atmospheric nitrogen (N) deposition simultaneously affect tropical urbanized landscapes, with unknown effects on properties like soil carbon (C) storage. We hypothesized that (H1) soil nitrate (NO₃^?) is elevated nearer to the urban core, reflecting N deposition gradients. (H2) Exotic grasslands have elevated soil NO₃^? and decreased soil C relative to secondary forests, with higher N promoting decomposer activity. (H3) Exotic grasslands have greater seasonality in soil NO₃^? vs. secondary forests, due to higher sensitivity of grassland soil moisture to rainfall. We predicted that NO₃^? would be positively related to dissolved organic C (DOC) production via changes in decomposer activity. We measured six paired grassland/secondary forest sites along a tropical urban‐to‐rural gradient during the three dominant seasons (hurricane, dry, and early wet). We found that (1) soil NO₃^? was generally elevated nearer to the urban core, with particularly clear spatial trends for grasslands. (2) Exotic grasslands had lower soil C than secondary forests, which was related to elevated decomposer enzyme activities and soil respiration. Unexpectedly, soil NO₃^? was negatively related to enzyme activities, and was lower in grasslands than forests. (3) Grasslands had greater soil NO₃^? seasonality vs. forests, but this was not strongly linked to shifts in soil moisture or DOC. Our results suggest that exotic grasses in tropical regions are likely to drastically reduce soil C storage, but that N deposition may have an opposite effect via suppression of enzyme activities. However, soil NO₃^? accumulation here was higher in urban forests than grasslands, potentially related to of aboveground N interception. Net urban effects on C storage across tropical landscapes will likely vary depending on the mosaic of grass cover, rates of N deposition, and responses by local decomposer communities.     

Mitochondrial free fatty acid β-oxidation supports oxidative phosphorylation and proliferation in cancer cells

Oxidative phosphorylation (OxPhos) is functional and sustains tumor proliferation in several cancer cell types. To establish whether mitochondrial β-oxidation of free fatty acids (FFAs) contributes to cancer OxPhos functioning, its protein contents and enzyme activities, as well as respiratory rates and electrical membrane potential (ΔΨm) driven by FFA oxidation were assessed in rat AS-30D hepatoma and liver (RLM) mitochondria. Higher protein contents (1.4–3 times) of β-oxidation (CPT1, SCAD) as well as proteins and enzyme activities (1.7–13-times) of Krebs cycle (KC: ICD, 2OGDH, PDH, ME, GA), and respiratory chain (RC: COX) were determined in hepatoma mitochondria vs. RLM. Although increased cholesterol content (9-times vs. RLM) was determined in the hepatoma mitochondrial membranes, FFAs and other NAD-linked substrates were oxidized faster (1.6–6.6 times) by hepatoma mitochondria than RLM, maintaining similar ΔΨm values. The contents of β-oxidation, KC and RC enzymes were also assessed in cells. The mitochondrial enzyme levels in human cervix cancer HeLa and AS-30D cells were higher than those observed in rat hepatocytes whereas in human breast cancer biopsies, CPT1 and SCAD contents were lower than in human breast normal tissue. The presence of CPT1 and SCAD in AS-30D mitochondria and HeLa cells correlated with an active FFA utilization in HeLa cells. Furthermore, the β-oxidation inhibitor perhexiline blocked FFA utilization, OxPhos and proliferation in HeLa and other cancer cells. In conclusion, functional mitochondria supported by FFA β-oxidation are essential for the accelerated cancer cell proliferation and hence anti-β-oxidation therapeutics appears as an alternative promising approach to deter malignant tumor growth.     

USP7 deubiquitinase promotes ubiquitin-dependent DNA damage signaling by stabilizing RNF168*

During DNA damage response (DDR), histone ubiquitination by RNF168 is a critical event, which orchestrates the recruitment of downstream DDR factors, e.g. BRCA1 and 53BP1. Here, we report USP7 deubiquitinase regulates the stability of RNF168. We showed that USP7 disruption impairs H2A and ultraviolet radiation (UVR)-induced γH2AX monoubiquitination, and decreases the levels of pBmi1, Bmi1, RNF168 and BRCA1. The effect of USP7 disruption was recapitulated by siRNA-mediated USP7 depletion. The USP7 disruption also compromises the formation of UVR-induced foci (UVRIF) and ionizing radiation-induced foci (IRIF) of monoubiquitinated H2A (uH2A) and polyubiquitinated H2AX/A, and subsequently affects UVRIF and IRIF of BRCA1 as well as the IRIF of 53BP1. USP7 was shown to physically bind RNF168 in vitro and in vivo. Overexpression of wild-type USP7, but not its interaction-defective mutant, prevents UVR-induced RNF168 degradation. The USP7 mutant is unable to cleave Ub-conjugates of RNF168 in vivo. Importantly, ectopic expression of RNF168, or both RNF8 and RNF168 together in USP7-disrupted cells, significantly rescue the formation of UVRIF and IRIF of polyubiquitinated H2A and BRCA1. Taken together, these findings reveal an important role of USP7 in regulating ubiquitin-dependent signaling via stabilization of RNF168.     

Survey of the year 2009: applications of isothermal titration calorimetry

Isothermal titration calorimetry (ITC) is now an established and invaluable method for determining the thermodynamic constants, association constant and stoichiometry of molecular interactions in aqueous solutions. The technique has become widely used by biochemists to study protein interaction with other proteins, small molecules, metal ions, lipids, nucleic acids and carbohydrates; and nucleic acid interaction with small molecules. The drug discovery industry has utilized this approach to measure protein (or nucleic acid) interaction with drug candidates. ITC has been used to screen candidates, guide the design of potential drugs and validate the modelling used in structure-based drug design. Emerging disciplines including nanotechnology and drug delivery could benefit greatly from ITC in enhancing their understanding and control of nano-particle assembly, and drug binding and controlled release.     

Construction and characterization of different fusion proteins between cellulases and β-glucosidase to improve glucose production and thermostability

A β-glucosidase from Clostridium cellulovorans (CcBG) was fused with one of three different types of cellulases from Clostridium thermocellum, including a cellulosomal endoglucanase CelD (CtCD), a cellulosomal exoglucanase CBHA (CtCA) and a non-cellulosomal endoglucanase Cel9I (CtC9I). Six bifunctional enzymes were constructed with either β-glucosidase or cellulase in the upstream. CtCD-CcBG showed the favorable specific activities on phosphoric acid swollen cellulose (PASC), an amorphous cellulose, with more glucose production (2 folds) and less cellobiose accumulation (3 folds) when compared with mixture of the single enzymes. Moreover, CtCD-CcBG had significantly improved thermal stability with a melting temperature (T_m) of 10.9 °C higher than that of CcBG (54.5 °C) based on the CD unfolding experiments. This bifunctional enzyme is thus useful in industrial application to convert cellulose to glucose.