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81.
《Biotechnic & histochemistry》2013,88(5):372-375
AbstractFluorochromes in combination with flow cytometry can be used for laboratory assessment of semen quality in humans and domestic animals. Some studies have reported the potential toxicity of these fluorochromes toward the cells analyzed, but not toward the laboratory technician who operates the analytical instrument. We tested the genotoxic potential of three fluorochromes, SYBR-14, propidium iodide, and Hoechst 33342, using the colorimetric SOS ChromoTest?. The test revealed no genotoxic potential for any of the three fluorochromes within the dilution ranges investigated. We conclude that occasional direct contact with these fluorescent probes does not necessarily pose a genotoxic hazard. 相似文献
82.
Matthew J Christmas Julia C Jones Anna Olsson Ola Wallerman Ignas Bunikis Marcin Kierczak Valentina Peona Kaitlyn M Whitley Tuuli Larva Alexander Suh Nicole E Miller-Struttmann Jennifer C Geib Matthew T Webster 《Molecular biology and evolution》2021,38(8):3126
Evidence is accumulating that gene flow commonly occurs between recently diverged species, despite the existence of barriers to gene flow in their genomes. However, we still know little about what regions of the genome become barriers to gene flow and how such barriers form. Here, we compare genetic differentiation across the genomes of bumblebee species living in sympatry and allopatry to reveal the potential impact of gene flow during species divergence and uncover genetic barrier loci. We first compared the genomes of the alpine bumblebee Bombus sylvicola and a previously unidentified sister species living in sympatry in the Rocky Mountains, revealing prominent islands of elevated genetic divergence in the genome that colocalize with centromeres and regions of low recombination. This same pattern is observed between the genomes of another pair of closely related species living in allopatry (B. bifarius and B. vancouverensis). Strikingly however, the genomic islands exhibit significantly elevated absolute divergence (dXY) in the sympatric, but not the allopatric, comparison indicating that they contain loci that have acted as barriers to historical gene flow in sympatry. Our results suggest that intrinsic barriers to gene flow between species may often accumulate in regions of low recombination and near centromeres through processes such as genetic hitchhiking, and that divergence in these regions is accentuated in the presence of gene flow. 相似文献
83.
Daniel Kleine Jonas Chodorski Sayani Mitra Christin Schlegel Katharina Huttenlochner Christine Müller‐Renno Joydeep Mukherjee Christiane Ziegler Roland Ulber 《Engineering in Life Science》2019,19(7):513-521
Imaging of biofilms on opaque surfaces is a challenge presented to researchers especially considering pathogenic bacteria, as those typically grow on living tissue, such as mucosa and bone. However, they can also grow on surfaces used in industrial applications such as food production, acting as a hindrance to the process. Thus, it is important to understand bacteria better in the environment they actually have relevance in. Stainless steel and titanium substrata were line structured and dotted surface topographies for titanium substrata were prepared to analyze their effects on biofilm formation of a constitutively green fluorescent protein (GFP)‐expressing Escherichia coli strain. The strain was batch cultivated in a custom built flow cell initially for 18 h, followed by continuous cultivation for 6 h. Confocal laser scanning microscopy (CLSM) was used to determine the biofilm topography. Biofilm growth of E. coli GFPmut2 was not affected by the type of metal substrate used; rather, attachment and growth were influenced by variable shapes of the microstructured titanium surfaces. In this work, biofilm cultivation in flow cells was coupled with the most widely used biofilm analytical technique (CLSM) to study the time course of growth of a GFP‐expressing biofilm on metallic surfaces without intermittent sampling or disturbing the natural development of the biofilm. 相似文献
84.
Marlene Jahnke Martin Gullstrm Josefine Larsson Maria E. Asplund Said Mgeleka Mathew Ogalo Silas Arielle Hoamby Jamal Mahafina Lina Mtwana Nordlund 《Ecology and evolution》2019,9(16):8953-8964
This study is the first large‐scale genetic population study of a widespread climax species of seagrass, Thalassia hemprichii, in the Western Indian Ocean (WIO). The aim was to understand genetic population structure and connectivity of T. hemprichii in relation to hydrodynamic features. We genotyped 205 individual seagrass shoots from 11 sites across the WIO, spanning over a distance of ~2,700 km, with twelve microsatellite markers. Seagrass shoots were sampled in Kenya, Tanzania (mainland and Zanzibar), Mozambique, and Madagascar: 4–26°S and 33–48°E. We assessed clonality and visualized genetic diversity and genetic population differentiation. We used Bayesian clustering approaches (TESS) to trace spatial ancestry of populations and used directional migration rates (DivMigrate) to identify sources of gene flow. We identified four genetically differentiated groups: (a) samples from the Zanzibar channel; (b) Mozambique; (c) Madagascar; and (d) the east coast of Zanzibar and Kenya. Significant pairwise population genetic differentiation was found among many sites. Isolation by distance was detected for the estimated magnitude of divergence (DEST), but the three predominant ocean current systems (i.e., East African Coastal Current, North East Madagascar Current, and the South Equatorial Current) also determine genetic connectivity and genetic structure. Directional migration rates indicate that Madagascar acts as an important source population. Overall, clonality was moderate to high with large differences among sampling sites, indicating relatively low, but spatially variable sexual reproduction rates. The strongest genetic break was identified for three sites in the Zanzibar channel. Although isolation by distance is present, this study suggests that the three regionally predominant ocean current systems (i.e., East African Coastal Current, North East Madagascar Current, and the South Equatorial Current) rather than distance determine genetic connectivity and structure of T. hemprichii in the WIO. If the goal is to maintain genetic connectivity of T. hemprichii within the WIO, conservation planning and implementation of marine protection should be considered at the regional scale—across national borders. 相似文献
85.
Bengt Steen 《The International Journal of Life Cycle Assessment》2007,12(2):103-108
Goal, Scope and Background The life cycles of many products including textiles contain chemicals for which process flow data are not known or are too
time consuming to collect. Although each chemical may not contribute significantly to the LCA results of the product, which
might justify excluding them, but together their contribution could be significant. Similarly, rough estimates of the process
flows for the production of a single chemical may be very uncertain and considered meaningless, while the estimates of the
cumulative data of process flows for several chemicals may be less uncertain and be a meaningful contribution to the quality
of the LCA results. There are methods for estimation of process flows for different types of products, with varying demands
regarding input data and time and with varying accuracy of the results. This work contributes to the available methods, focusing
on simple estimations for production of chemical substances. The goal was to create a fast method for estimation of emissions,
resource and energy flows (process flows) for the production of chemicals, based on easily available data on the properties
of the chemicals. The process flows investigated were limited to those normally associated with process industries and contributing
most to depletion of resources, to global warming, acidification, eutrophication and photochemical ozone production, i.e.
use of energy, crude oil, coal, natural gas, uranium in ore and emissions of CO2, SOx, NOx, NMVOC, methane, BOD, COD and total
N. Toxic substances were excluded, since toxic emissions are substance specific and cannot be included in a generalization.
Method Available data for the process flows for the production of chemicals of mainly fossil origin were correlated to properties
of chemicals such as amount of carbon in the molecule, heat of formation and average number of chemical reaction steps in
the production. The production procedures were found in readily available literature. Up to about six reaction steps were
evaluated in the correlation study. The variations in the process flows among the chemicals studied were calculated.
Results and Discussion There were weak correlations between average number of chemical reaction steps in the production and energy use, COD measured
in water emissions, and SOx and NOx emissions to air. For the remaining properties of chemicals and process flows, there were
only weak correlations for share of double bonding in the molecule if only molecules containing double bondings were included.
Conclusions The precision in estimation of the process flows increases non-significantly when adding information on the number of reaction
steps or share of double bonding for chemicals containing double bonding is added.
Recommendations and Outlook It seems reasonable to start with a simple grouping method to estimate the process flows for the production of a chemical
of fossil origin. Further investigations might investigate whether there is a correlation between process flows and the costs
of chemicals, and further study the correlations between process flows and share of double bonding for chemicals containing
double bondings. 相似文献
86.
Sandy Weidlich Klaus H. Hoffmann Joseph Woodring 《Archives of insect biochemistry and physiology》2015,90(4):209-217
Little is known concerning the sites and the ratios of the lipase secretions in insects, therefore we undertook an examination of the lipase secretion of fed and unfed adult female Gryllus bimaculatus. The ratio of triacylglyceride lipase, diacylglyceride lipase, and phosphatidylcholine lipase secreted by fed females in the caecum and ventriculus is 1:1.4:0.4. These activities decrease in the caecum by 30–40% in unfed females. The total lipase activity (TLA) in the caecum is about 10 times that in the ventriculus. Minimal lipase secretion occurs before and during the final moult, and remains at this level in unfed crickets, indicating a basal secretion rate. In 2‐day‐old fed females, about 10% of the TLA in the entire gut is found in the crop, about 70% in the caecum, 20% in the ventriculus, and 3% in the ileum. Lipases in the ventriculus are recycled back to the caecum and little is lost in the feces. Oleic acid stimulated in vitro lipase secretion, but lipids did not. Feeding stimulated lipase secretion, starvation reduced lipase secretion, but this does not prove a direct prandal regulation of secretion, because feeding also induced a size and volume increase of the caecum. 相似文献
87.
Mei Yang Chengyuan Xu Pierre Duchesne Qiang Ma Ganqiang Yin Yang Fang Fan Lu Wenju Zhang 《Ecology and evolution》2019,9(6):3059-3074
Estuarine organisms grow in highly heterogeneous habitats, and their genetic differentiation is driven by selective and neutral processes as well as population colonization history. However, the relative importance of the processes that underlie genetic structure is still puzzling. Scirpus mariqueter is a perennial grass almost limited in the Changjiang River estuary and its adjacent Qiantang River estuary. Here, using amplified fragment length polymorphism (AFLP), a moderate‐high level of genetic differentiation among populations (range FST: 0.0310–0.3325) was showed despite large ongoing dispersal. FLOCK assigned all individuals to 13 clusters and revealed a complex genetic structure. Some genetic clusters were limited in peripheries compared with very mixing constitution in center populations, suggesting local adaptation was more likely to occur in peripheral populations. 21 candidate outliers under positive selection were detected, and further, the differentiation patterns correlated with geographic distance, salinity difference, and colonization history were analyzed with or without the outliers. Combined results of AMOVA and IBD based on different dataset, it was found that the effects of geographic distance and population colonization history on isolation seemed to be promoted by divergent selection. However, none‐liner IBE pattern indicates the effects of salinity were overwhelmed by spatial distance or other ecological processes in certain areas and also suggests that salinity was not the only selective factor driving population differentiation. These results together indicate that geographic distance, salinity difference, and colonization history co‐contributed in shaping the genetic structure of S. mariqueter and that their relative importance was correlated with spatial scale and environment gradient. 相似文献
88.
Havenga MJ van Dam B Groot BS Grimbergen JM Valerio D Bout A Quax PH 《Analytical biochemistry》2001,290(2):283-291
Nitric oxide (NO) is involved in the regulation of SMC proliferation during intimal hyperplasia as has been shown by the inhibitory effect on intimal hyperplasia of adenovirus-mediated ceNOS overexpression in injured arteries in pig. Good assays to quantify the NO-producing enzymes, i.e., NO synthases (NOS), are essential to analyze the mechanism of action of NO in this process. We have developed novel flow cytometric assays for the simultaneous detection of NOS-3 protein, using NOS-3 specific antibodies, and NO production using 4,5-diaminofluorescein-diacetate (DAF-2/DA). The presence of NOS-3 protein and NO production is demonstrated on human A549 and HepG2 cells infected with a NOS-3 adenovirus (Ad.NOS-3). A comparative study showed that the flow cytometric assays are equally sensitive as Western blot analysis, the citrulline assay, or the Sievers assay. On human endothelial and SMC, NOS-3 protein and NO production were simultaneously detected with the assays, both under basal conditions and after Ad.NOS-3transduction. Simultaneous analysis of NOS-3 protein and NO production, made possible by the here-described novel flow cytometric assays, is of significant value to those investigating NOS-3 and NO. 相似文献
89.
Marta Mauro-Lizcano Lorena Esteban-Martínez Esther Seco Ana Serrano-Puebla Lucia Garcia-Ledo Cláudia Figueiredo-Pereira Helena L A Vieira Patricia Boya 《Autophagy》2015,11(5):833-843
Mitochondrial autophagy, also known as mitophagy, is an autophagosome-based mitochondrial degradation process that eliminates unwanted or damaged mitochondria after cell stress. Most studies dealing with mitophagy rely on the analysis by fluorescence microscopy of mitochondrial-autophagosome colocalization. However, given the fundamental role of mitophagy in the physiology and pathology of organisms, there is an urgent need for novel quantitative methods with which to study this process. Here, we describe a flow cytometry-based approach to determine mitophagy by using MitoTracker Deep Red, a widely used mitochondria-selective probe. Used in combination with selective inhibitors it may allow for the determination of mitophagy flux. Here, we test the validity of the use of this method in cell lines and in primary cell and tissue cultures. 相似文献
90.