Epigenetic clock and methylation studies in elephants

Age‐associated DNA‐methylation profiles have been used successfully to develop highly accurate biomarkers of age ("epigenetic clocks") in humans, mice, dogs, and other species. Here we present epigenetic clocks for African and Asian elephants. These clocks were developed using novel DNA methylation profiles of 140 elephant blood samples of known age, at loci that are highly conserved between mammalian species, using a custom Infinium array (HorvathMammalMethylChip40). We present epigenetic clocks for Asian elephants (Elephas maximus), African elephants (Loxodonta africana), and both elephant species combined. Two additional human‐elephant clocks were constructed by combining human and elephant samples. Epigenome‐wide association studies identified elephant age‐related CpGs and their proximal genes. The products of these genes play important roles in cellular differentiation, organismal development, metabolism, and circadian rhythms. Intracellular events observed to change with age included the methylation of bivalent chromatin domains, and targets of polycomb repressive complexes. These readily available epigenetic clocks can be used for elephant conservation efforts where accurate estimates of age are needed to predict demographic trends.     

The founding of a southern elephant seal colony

The only large mainland colony of southern elephant seals (Mirounga leonina) is on Península Valdés, at 42°S, in Argentine Patagonia. Censuses of pups have been carried out regularly there since 1970, and the population grew five‐fold by 2010. Here we use Bayesian modeling tools to make rigorous estimates of the rate of population growth, r, and to estimate survival and recruitment parameters that could account for the growth, incorporating observation error across different census methods. In the 1970s, r= 8%/yr, but has slowed to <1%/yr over the past decade. Using explicit demographic models, we established that the high growth of the 1970s was consistent with adult and juvenile survival at the upper end of published values (0.87/yr adult female survival; 0.40 juvenile survivorship to age four); the decline in the rate of population growth from 1970 to 2010 can be described by density‐dependent reductions in adult and juvenile survival that fall well within published variation. Extrapolating empirical models of population growth rate backwards illustrates that the population could have been an established colony, with 100 pups born per year, between 1915 and 1945, consistent with qualitative observations prior to 1950. We conclude that the Valdés colony was founded by a few immigrants early in the 20th century and has been growing mostly by internal recruitment, with unknown density‐dependent processes causing a reduction in growth and stabilization at 15,000–16,000 pups born.     

Effective sociodemographic population assessment of elusive species in ecology and conservation management

Wildlife managers are urgently searching for improved sociodemographic population assessment methods to evaluate the effectiveness of implemented conservation activities. These need to be inexpensive, appropriate for a wide spectrum of species and straightforward to apply by local staff members with minimal training. Furthermore, conservation management would benefit from single approaches which cover many aspects of population assessment beyond only density estimates, to include for instance social and demographic structure, movement patterns, or species interactions. Remote camera traps have traditionally been used to measure species richness. Currently, there is a rapid move toward using remote camera trapping in density estimation, community ecology, and conservation management. Here, we demonstrate such comprehensive population assessment by linking remote video trapping, spatially explicit capture–recapture (SECR) techniques, and other methods. We apply it to three species: chimpanzees Pan troglodytes troglodytes, gorillas Gorilla gorilla gorilla, and forest elephants Loxodonta cyclotis in Loango National Park, Gabon. All three species exhibited considerable heterogeneity in capture probability at the sex or group level and density was estimated at 1.72, 1.2, and 1.37 individuals per km² and male to female sex ratios were 1:2.1, 1:3.2, and 1:2 for chimpanzees, gorillas, and elephants, respectively. Association patterns revealed four, eight, and 18 independent social groups of chimpanzees, gorillas, and elephants, respectively: key information for both conservation management and studies on the species' ecology. Additionally, there was evidence of resident and nonresident elephants within the study area and intersexual variation in home range size among elephants but not chimpanzees. Our study highlights the potential of combining camera trapping and SECR methods in conducting detailed population assessments that go far beyond documenting species diversity patterns or estimating single species population size. Our study design is widely applicable to other species and spatial scales, and moderately trained staff members can collect and process the required data. Furthermore, assessments using the same method can be extended to include several other ecological, behavioral, and demographic aspects: fission and fusion dynamics and intergroup transfers, birth and mortality rates, species interactions, and ranging patterns.     

Beehive fences as effective deterrents for crop‐raiding elephants: field trials in northern Kenya

Increasing elephant populations in Kenya since 1989 have been widely praised as a conservation success story. However, where elephants and agricultural land overlap, incidents of human–elephant conflict are on the increase. Wildlife managers and farmers are now trying different farm‐based deterrents to keep elephants out of crops. Here, we present data on the effectiveness of a novel beehive fence deployed in a Turkana community of 62 communally run farms in Kenya. Specifically, 1700 m of beehive fences semi‐surrounded the outer boundaries of seventeen farms, and we compared elephant farm invasion events with these and to seventeen neighbouring farms whose boundaries were ‘protected’ only by thorn bush barriers. We present data from 45 farm invasions, or attempted invasions, recorded over 2 years. Thirteen groups of elephants approached the beehive fences and turned away. Of the 32 successful farm invasions, only one bull elephant broke through the beehive fences. These results demonstrate that beehive fences are more effective than thorn bush barriers at deterring elephants and may have a role to play in alleviating farmer–elephant conflict. Additionally, the harvesting of 106 kg of honey during the trial period suggests that beehive fences may also improve crop production and enhance rural livelihoods through honey sales.     

MYSTERIES OF ADAPTATION TO HYPOXIA AND PRESSURE IN MARINE MAMMALSThe Kenneth S. Norris Lifetime Achievement Award Lecture

This paper reviews past and current work on diving behavior, effects of pressure, and the aerobic diving limit from the perspective of the Ken Norris Lifetime Achievement Award. Because of the influence of Norris to marine mammalogy in general, and to my career in particular, I want to emphasize the important tradition of mentors and colleagues as keystones to a successful career in science, and ultimately to the success of science itself. These two related activities are illustrated by studies on marine mammals that were conducted in an endeavor to understand: (1) the behavioral traits associated with deep diving, (2) the mechanical and physiological effects of pressure during routine dives to great depth, and (3) the degree of oxygen depletion that they routinely endure while diving. The search for answers has resulted in numerous physiological and ecological experiments, along with accompanying theoretical analyses. Currently it appears that some deep-diving mammals may suffer from bends, and some may resort more often than what seems physiologically possible to anaerobic metabolism while diving. Above all, the way divers manage their nitrogen and oxygen stores remains a mystery.     

Establishment of Broad‐leaved Thickets in Serengeti,Tanzania: The Influence of Fire,Browsers, Grass Competition,and Elephants1

The role of Euclea divinorum in the establishment of broad‐leaved thickets was investigated in Serengeti National Park, Tanzania. Thickets are declining due to frequent fires, but have not reestablished when fires have been removed. Seedlings of E. divinorum, a fire‐resistant tree, were found in grassland adjacent to thickets and as thicket canopy trees and may function to facilitate thicket establishment. Seedlings of thicket species were abundant under E. divinorum canopy trees but not in the grassland, indicating that E. divinorum can facilitate forest establishment. We examined E. divinorum establishment in grassland by measuring survival and growth of seedlings with respect to fire, browsers, elephants, and competition with grass. Seedling survival was reduced by fire (50%), browsers (70%), and competition with grass (50%), but not by elephants. Seedling growth rate was negative unless both fire and browsers, or grass was removed. Establishment of thickets via E. divinorum is not occurring under the current conditions in Serengeti of frequent fires, abundant browsers, and dense grass in riparian areas. Conditions that allowed establishment may have occurred in 1890–1920s during a rinderpest epizootic, and measurements of thicket canopy trees suggest they established at that time.     

Locomotion in diving elephant seals: physical and physiological constraints

To better understand how elephant seals (Mirounga angustirostris) use negative buoyancy to reduce energy metabolism and prolong dive duration, we modelled the energetic cost of transit and deep foraging dives in an elephant seal. A numerical integration technique was used to model the effects of swim speed, descent and ascent angles, and modes of locomotion (i.e. stroking and gliding) on diving metabolic rate, aerobic dive limit, vertical displacement (maximum dive depth) and horizontal displacement (maximum horizontal distance along a straight line between the beginning and end locations of the dive) for aerobic transit and foraging dives. Realistic values of the various parameters were taken from previous experimental data. Our results indicate that there is little energetic advantage to transit dives with gliding descent compared with horizontal swimming beneath the surface. Other factors such as feeding and predator avoidance may favour diving to depth during migration. Gliding descent showed variable energy savings for foraging dives. Deep mid-water foraging dives showed the greatest energy savings (approx. 18%) as a result of gliding during descent. In contrast, flat-bottom foraging dives with horizontal swimming at a depth of 400m showed less of an energetic advantage with gliding descent, primarily because more of the dive involved stroking. Additional data are needed before the advantages of gliding descent can be fully understood for male and female elephant seals of different age and body composition. This type of data will require animal-borne instruments that can record the behaviour, three-dimensional movements and locomotory performance of free-ranging animals at depth.     

西双版纳国家级自然保护区勐腊子保护区亚洲象种群和栖息地评价

通过社区村寨访问、监测网络、痕迹追踪和生态位因子分析(ENFA)等方法对西双版纳国家级自然保护区勐腊子保护区内亚洲象的种群和栖息地状况进行研究。结果显示:2007年勐腊子保护区的亚洲象种群数量约为25—32头,2009年其数量增至35—42头;2006—2007年期间,亚洲象的分布区包含保护区东南部和东部的两片区域,面积共221 km2,占保护区总面积的19.2%;象群在分布区内开辟了固定的活动路线,总长约65 km,它们利用这些路线巡回取食天然植物和农作物并导致严重的人象冲突;栖息地评价研究表明亚洲象对栖息地具有一定的选择偏好性,保护区内亚洲象喜好的栖息地面积为328.5 km2,仅占保护区总面积的28.5%,且主要被分为两大斑块1和2,分别位于保护区的东南部和西北部。     

Trends in populations of elephant and other large herbivores in Gonarezhou National Park,Zimbabwe, as revealed by sample aerial surveys

For 30 years, regular aerial surveys in Zimbabwean protected areas were funded, designed and executed primarily to estimate elephant numbers. Other large herbivores were recorded, even though some species were not easily seen from the air in savannah woodlands. Population estimates for species other than elephant provided indices of abundance that could be used to determine temporal trends in population size. This study tests for significant trends in the abundance of large herbivores in Gonarezhou National Park, assuming that data from aerial sample surveys designed for elephant also provide accurate estimates of real trends in the populations of other herbivores. For each species, the exponential rate of population change was calculated using weighted regression, with the variance of this rate based on the sampling variances of the population estimates. Significant population trends were detected for eight species. Before the 1992 drought, elephant number was held approximately constant by frequent culls, but afterwards, it increased at a mean annual rate of 6.2% (confidence limits 4.0% and 8.6%). Elephants in cow herds increased at 7.3%, significantly faster than elephants in bull herds (?0.5%). Buffalo, eland, kudu, nyala, waterbuck, wildebeest and zebra all increased in number, after population declines during the drought.