Soil carbonate drives local adaptation in Arabidopsis thaliana

High soil carbonate limits crop performance especially in semiarid or arid climates. To understand how plants adapt to such soils, we explored natural variation in tolerance to soil carbonate in small local populations (demes) of Arabidopsis thaliana growing on soils differing in carbonate content. Reciprocal field‐based transplants on soils with elevated carbonate (+C) and without carbonate (?C) over several years revealed that demes native to (+C) soils showed higher fitness than those native to (?C) soils when both were grown together on carbonate‐rich soil. This supports the role of soil carbonate as a driving factor for local adaptation. Analyses of contrasting demes revealed key mechanisms associated with these fitness differences. Under controlled conditions, plants from the tolerant deme A1_(+C) native to (+C) soil were more resistant to both elevated carbonate and iron deficiency than plants from the sensitive T6_(?C) deme native to (?C) soil. Resistance of A1_(+C) to elevated carbonate was associated with higher root extrusion of both protons and coumarin‐type phenolics. Tolerant A1_(+C) also had better Ca‐exclusion than sensitive T6_(?C). We conclude that Arabidopsis demes are locally adapted in their native habitat to soils with moderately elevated carbonate. This adaptation is associated with both enhanced iron acquisition and calcium exclusion.     

Modeling leaf CO2 assimilation and Photosystem II photochemistry from chlorophyll fluorescence and the photochemical reflectance index

We present a simple model to assess the quantum yield of photochemistry (Φ_P) and CO₂ assimilation rate from two parameters that are detectable by remote sensing: chlorophyll (chl) fluorescence and the photochemical reflectance index (PRI). Φ_P is expressed as a simple function of the chl fluorescence yield (Φ_F) and nonphotochemical quenching (NPQ): Φ_P = 1–bΦ_F(1 + NPQ). Because NPQ is known to be related with PRI, Φ_P can be remotely assessed from solar‐induced fluorescence and the PRI. The CO₂ assimilation rate can be assessed from the estimated Φ_P value with either the maximum carboxylation rate (V_cmax), the intercellular CO₂ concentration (C_i), or parameters of the stomatal conductance model. The model was applied to experimental data obtained for Chenopodium album leaves under various environmental conditions and was able to successfully predict Φ_F values and the CO₂ assimilation rate. The present model will improve the accuracy of assessments of gas exchange rates and primary productivity by remote sensing.     

我国涉天鹅属鸟类死亡案件分析及防控对策研究

我国有分布的天鹅属所有种(Cygnusspp.)均为国家Ⅱ级重点保护野生动物,根据中华人民共和国刑法,非法猎捕、杀害珍贵濒危野生动物构成刑事犯罪。然而,天鹅死亡案件仍时有发生。本文分析2000至2016年有统计的我国天鹅死亡案件发现,每年11月至翌年1月是涉天鹅案件的高发时期;毒杀为致死主因;案件多发生于我国行政区划交界处。因此,应于迁徙越冬季节重点加强高案发地点的侦查监管;加强克百威(呋喃丹)为代表的高毒农药管控;建立迁徙季节多地区执法联动机制。     

Quality control and integration of genotypes from two calling pipelines for whole genome sequence data in the Alzheimer's disease sequencing project

The Alzheimer's Disease Sequencing Project (ADSP) performed whole genome sequencing (WGS) of 584 subjects from 111 multiplex families at three sequencing centers. Genotype calling of single nucleotide variants (SNVs) and insertion-deletion variants (indels) was performed centrally using GATK-HaplotypeCaller and Atlas V2. The ADSP Quality Control (QC) Working Group applied QC protocols to project-level variant call format files (VCFs) from each pipeline, and developed and implemented a novel protocol, termed “consensus calling,” to combine genotype calls from both pipelines into a single high-quality set. QC was applied to autosomal bi-allelic SNVs and indels, and included pipeline-recommended QC filters, variant-level QC, and sample-level QC. Low-quality variants or genotypes were excluded, and sample outliers were noted. Quality was assessed by examining Mendelian inconsistencies (MIs) among 67 parent-offspring pairs, and MIs were used to establish additional genotype-specific filters for GATK calls. After QC, 578 subjects remained. Pipeline-specific QC excluded ~12.0% of GATK and 14.5% of Atlas SNVs. Between pipelines, ~91% of SNV genotypes across all QCed variants were concordant; 4.23% and 4.56% of genotypes were exclusive to Atlas or GATK, respectively; the remaining ~0.01% of discordant genotypes were excluded. For indels, variant-level QC excluded ~36.8% of GATK and 35.3% of Atlas indels. Between pipelines, ~55.6% of indel genotypes were concordant; while 10.3% and 28.3% were exclusive to Atlas or GATK, respectively; and ~0.29% of discordant genotypes were. The final WGS consensus dataset contains 27,896,774 SNVs and 3,133,926 indels and is publicly available.     

Optimization on conditions of podophyllotoxin-loaded liposomes using response surface methodology and its activity on PC3 cells

The purpose of this study was to optimize the preparation conditions of podophyllotoxin liposomes (PPT-Lips), and to investigate their effects on PC3 cells. PPT-Lips were prepared by using a thin-film dispersion method. In order to achieve maximum drug encapsulation efficiency (EE), the process and formulation variables were optimized by response surface methodology (RSM). The optimum preparation conditions were cholesterol to lecithin ratio of 3.6:40 (w/w), lipid to drug ratio of 15.8:1 (w/w), and the ultrasonic intensity of 35% (total power of 400?W). The experimental EE of PPT-Lips was 90.425%, which was consistent with the theoretically predicted value. The characterization studies showed that PPT-Lips were well-dispersible spherical particles with an average size of 106?nm and a zeta potential of –10.1?mV. A gradual and time-dependent pattern of PPT from liposomes was found in in vitro drug release with a cumulative release amount up to 70.3% in 24?h. Results of cell viability experiments on PC3 cells demonstrated that PPT-Lips exhibited more effective anticancer activity in comparison with free PPT. Therefore, PPT-Lips represent an efficient and promising drug delivery system for PPT.     

Baseline sensitivity and control efficacy of fluazinam against Sclerotinia sclerotiorum in Henan Province,China

Sclerotinia stem rot, caused by Sclerotinia sclerotiorum, is a devastating disease in Henan Province, of the main rapeseed production areas in China. Fluazinam belongs to the broad‐spectrum phenylpyridinamine fungicides, which have high activity in inhibiting the mycelial growth of S. sclerotiorum. In this study, 191 field isolates were obtained from different oilseed rape fields in Henan Province, before being exposed to fluazinam in 2015. The baseline sensitivity of S. sclerotiorum to fluazinam was established. The effective concentration for 50% inhibition of mycelial growth (EC₅₀) ranged from 0.0019 to 0.0337 μg/ml, and the mean EC₅₀ value was 0.0084 ± 0.0055 μg/ml. The range of the frequency distribution was narrow. The results of a cross‐resistance assay revealed no cross‐resistance between fluazinam and carbendazim, dimethachlone, boscalid or fludioxonil. Field efficacy tests showed that the control efficacies of fluazinam (50% WG) applied at 150, 225 and 300 g ai ha^?1 were 67%, 73% and 88%, respectively. In contrast, the control efficacies of boscalid (50% WG) and carbendazim (50% WP) applied at 225 and 1,500 g ai ha^?1 were 71% and 52%, respectively.     

Induction of systemic resistance in tomato against broomrape (Phelipanche aegyptiaca)

Rhizosphere dwelling bacteria can increase plant resistance to biotic and abiotic stresses, and they promote plant growth through various mechanisms. In this study, three bioassays were conducted including the following: (a) screening for effective bacterial isolates in the suppression of broomrape, (b) evaluating induced systemic resistance against broomrape and (c) comparing the selected bacterium isolate with plant chemical inducers. Fifteen plant growth‐promoting rhizobacteria (PGPR) were examined to assess their biocontrol potential against Egyptian broomrape (Phelipanche aegyptiaca). Ten isolates significantly reduced the broomrape biomass compared to the control. The Lysinibacillus boronitolerans B124 reduced the dry weight of broomrape plants from 2.15 g in control to 0.45 g. Bacillus megaterium B6 was the best isolate in reducing the number of broomrape tubercles. In addition, the activity of three selected bacterial isolates was investigated in induced systemic resistance to broomrape by split‐root method. The Bacillus pumilus INR7 reduced the number of visible broomrape tubercles by 90%, and B. megaterium B71 and L. boronitolerans B124 were the next two in rank. Compared with the control, L. boronitolerans B124 reduced the dry weight of broomrape from 1.49 g in control to 0.39 g. In a subsequent experiment, L. boronitolerans B124 was evaluated along with some resistance‐inducing volatile compounds. Lysinibacillus boronitolerans B124 decreased the number of broomrapes by 87% on average, while the lowest dry weight of broomrape was observed in methyl jasmonate treatment. In conclusion, PGPR have considerable potential to be used in the integrated management of broomrape. It is also possible to use a mixture of rhizobacteria and defence inducers, such as biogenic volatiles as a promising approach in the management of this noxious parasitic weed.     

Assessing the performance of pea and lentil at different seeding densities as trap crops for the management of wireworms in spring wheat

Wireworms, the larvae of click beetles (Elateridae), are difficult to manage due to their habitats and behaviour. Wireworms pose a major threat to the wheat crop in the north‐western USA. Seed treatment with neonicotinoids, biological control management and some cultural controls are recommended to manage these pests. Trap cropping is an emerging way to manage wireworms. In strawberry and potato crops, trap cropping has been found effective at attracting wireworms away from the principal crop. An earlier study in the Golden Triangle area of Montana found that pea and lentil could be effective trap crops for managing wireworms in spring wheat. In the present study, experiments were conducted at two locations. The effectiveness of peas and lentils as trap crops with wheat at different seeding densities was assessed [pea at 0, 4, 8, 16 seeds/sq.ft. or 0, 43, 86, 172 seeds/sq.m.; lentil at 0, 6, 12, 18 OR 0, 65, 130, 194 seeds/sq.m.; both with wheat at 0, 11, 22, or 28 seeds/sq.ft. or 0, 120, 230, 300 seeds/sq.m.] in a randomized design where all three crops were intercropped. Both trap crops were found to be effective in protecting wheat at standard seeding rates of 8 seeds/sq.ft. for pea and 12 seeds/sq.ft. for lentils. At these seeding rates, higher numbers of wireworms were found to be attracted to the trap crop, resulting in higher yield (7%–10%) of the associated spring wheat plant stands at 22 seeds/sq.ft. To develop an effective trap crop strategy, the pea–wheat and lentil–wheat spatial patterns that are possible need to be assessed in further field trials. Proper design and evaluation of the cost–benefit ratio of pea and lentil as trap crops are likely to produce good results for wheat crops in Montana.     

Acceptability of Drosophila suzukii as prey for common predators occurring in cherries and berries

The invasive cherry vinegar fly, Drosophila suzukii, has been identified in Europe as a destructive fruit pest since its arrival in 2008. In the present laboratory study, three predatory insects (Orius majusculus, Chrysoperla carnea, and Forficula auricularia) naturally occurring on fruit crops in Europe were investigated for their ability to attack and feed on D. suzukii within and outside fruits. The predators were provided with various D. suzukii life stages (eggs, larvae, pupae or adults) exposed or within infested cherries. The anthocorid bug O. majusculus fed on eggs and larvae, but was not able to attack pupae. Larvae of the lacewing C. carnea preyed upon D. suzukii eggs, larvae and pupae and also captured adult flies. The European earwig F. auricularia was the most voracious predator of these three tested species. Although the earwigs were not able to catch adult flies, they readily preyed upon every other developmental stage. Adult O. majusculus or third instar larvae of C. carnea significantly reduced the offspring of D. suzukii from infested cherries, when these contained the egg stage of the pest. None of the predators were able to attack early larval stages inside the cherries. But pupae that protruded from the fruit epicarp or that had pupated outside the fruit were accessible to lacewing larvae and earwigs and significantly reduced by them. Orius bugs, lacewing larvae and earwigs were able, under laboratory conditions, to capture and prey upon various life stages of the invasive pest, if not completely concealed inside the fruit. Our findings suggest that these generalist predators may have some control capacity on infested fruit in cultivated fruit crops and also in non‐crop habitats.