Molecular Diversity and Evolution of bla TEM Genes Encoding β-Lactamases Resistant to Clavulanic Acid in Clinical E. coli

The molecular diversity of inhibitor-resistant TEM (IRT) enzymes was explored using a strategy which involved DNA amplification by polymerase chain reaction (PCR), analysis of restriction fragment length polymorphism (RFLP), and direct nucleotide sequencing. The study of plasmid-borne genes from 27 strains, resistant to amoxicillin and β-lactamase-inhibitor combinations, identified mutations resulting in amino acid change at positions 69, 244, 275, and 276 known to be associated with the IRT phenotype and a mutation at nucleotide position 162 in the promoter region. These mutations were found to lie on two different gene sequences, described here as ``TEM-1B like' and ``TEM-2 like' restriction linkage groups. Further analysis, of nucleotide sequences of promoter and coding regions of the β-lactamases, confirmed that a given mutation causing IRT phenotype could be associated with two different gene sequence frameworks and two different causal mutations could lie on identical gene sequence framework. These data argue in favor of convergent phenotypic evolution of IRT enzymes under the selective pressure imposed by the intensive clinical use of β-lactam–β-lactamase inhibitor combinations. Received: 18 March 1996 / Accepted: 15 July 1996     

经济开发区生态规划与建设研究

生态规划和建设是协调经济发展和生态环境关系,创造和谐的人工化环境的调控对策。木文研究了沈阳开发区生态规划和建设的理论、方法,着重探讨了开发区经济、环境协调发展的途径:1)选择理想的协调发展优化方案,2)控制发展热电生产,发展集中供热和低能耗高技术产业,3)节约水资源,提高水循环利用率,4)在生态学原理指导下进行生态管理。     

Hückel framework study on the superconducting vibronic interaction in (AB) N chains

Superconducting vibronic interaction in the vibronic superconductivity motif has been studied in the Hückel framework for (AB) _N chain systems. Within the on-site and nearest-neighbor approximation a new vibronic constant, /L, has been introduced, of which the importance has been discussed. The effect of the vibronic operator, , has also been studied. It is also concluded that the size-dependence of the superconducting vibronic interaction also exists in the (AB) _N chain systems.On leave from the Changchun Institute of Applied Chemistry, Academia Sinica, Changchun, P. R. China, as an STA fellowship awardee hosted by the Institute of Physical and Chemical Research of Japan.     

Daily Rhythms Related to Distinct Social Tasks inside an Eusocial Bee Colony

A bee colony is often compared to a multicellular organism, mainly because of its spatial organization. We propose that a temporal organization of equal importance is also present. To support this view, we studied the reproductive processes of two closely related species of stingless bees. Stingless bees enable observations of daily rhythms that are performed by distinct social classes. The emergent process, POP, is cyclic and consists of the building and provisioning of brood cells by the worker bees and egg‐laying by the queen. Colonies were kept in the laboratory under constant conditions with the exit tube opening to the environment; thus, foragers had direct access to environmental cycles. At a later stage of the experiment, the exit tube was closed by a sieve; in this case, bees had their own stock of food, but the environmental LD cycle could still be detected when they were inside the exit tube. Daily POP rhythms were present and showed distinct temporal patterns in each species. A third condition was imposed on one of the species only: the exit tube was closed by a sieve and maintained inside a box that was provided with constant illumination. In this colony, the POP rhythm was perturbed by the destruction of the brood cells. Restoration of POP consisted of a rapid reconstruction of cells followed by a late oviposition in the same day. As different rhythmic patterns were detected, but showed regular timings with respect to one another, an interpretation based upon the concept of an internal temporal order is suggested.     

Could 2021–2030 be the decade to couple new human values with ecological restoration? Valuable insights and actions are emerging from the Colombian Amazon

Looking ahead to the United Nations' 2021–2030 Decade of Ecosystem Restoration, we would like to ponder and discuss two fundamental goals to improve, mainstream, and scale up ecological restoration. The first is to cultivate alternative visions of the human dimension in relation to ecological restoration and other restorative activities. The second is to develop shared protocols for planning, revamping, and monitoring the progress of social goals related to ecological restoration within the social construction theoretical framework, based on three interrelated dimensions: stakeholder‐based problem definition, social representations, and legitimation. We draw on ongoing work in Caquetá (Colombian Amazonia) to consider how these dimensions may be incorporated into tangible restoration practices. Caquetá is facing the highest deforestation rates in the Amazonian region due to a highly volatile sociopolitical context and recent armed conflicts that have claimed thousands of victims to date. We conclude that the work in Caquetá demonstrates a process of social construction that effectively couples new human values with ecological restoration. Our work also provides evidence that the human dimension of restoration is a central issue in the restoration of human, social, and ecosystem health and must be integrated into the framework of the coming Decade of Ecosystem Restoration.     

构建基于CRISPR/Cas9技术敲除ALOX5的质粒

旨在利用CRISPR/Cas9技术构建敲除花生四烯5-脂氧合酶基因(Arachidonate 5-lipoxygenase gene,ALOX5)的重组质粒。设计合成3对靶向敲除ALOX5第六外显子的sgRNA,将其分别插入到CRISPR/Cas9质粒骨架pX458载体中,转化感受态大肠杆菌DH5α后挑取克隆,通过测序评估重组质粒是否构建成功。将构建好的重组质粒转染293T细胞,在荧光显微镜下观察转染效果,挑取转染成功的细胞,用试剂盒提取转染细胞基因组DNA,PCR扩增含敲除位点的DNA片段,用测序技术获得核苷酸序列,用DNAStar软件分析转染细胞中ALOX5基因敲除情况。测序结果表明2对双链sgRNA寡核苷酸已插入质粒,且序列正确,靶向ALOX5基因的重组质粒pX458-sgRNAs-ALOX5构建成功。其在293T细胞中的转染效率约为50%,用一代测序法未检测到sgRNAs的切割效果。初步表明利用CRISPR/Cas9技术成功构建靶向ALOX5基因的重组质粒pX458-sgRNAs-ALOX5。     

喀斯特槽谷典型植物水分利用效率对隧道建设的响应

隧道工程建设对喀斯特槽谷地区地下水循环系统的破坏,引起地下水位下降,可能影响周围生态环境。依托重庆中梁山喀斯特槽谷,对旱、雨两季隧道影响区与无隧道影响区不同深度土层(0—20 cm、20—40 cm)土壤含水量以及典型植物(常绿乔木、常绿灌木)瞬时水分利用效率(InstantaneousWater Use Efficiency,WUE_(inst))进行对比分析,探究植物水分利用效率对隧道建设的响应。结果表明:在不同影响区,主要由蒸发与降水引起土壤含水量在垂直和季节变化上的趋势相似,但隧道影响区土壤含水量在旱、雨两季均显著高于无隧道影响区;不同影响区植物WUE_(inst)存在明显的季节差异,旱季各植物种WUE_(inst)显著高于雨季。而旱、雨两季隧道影响区植物叶片WUE_(inst)显著高于无隧道影响区;此外,植物WUE_(inst)与土壤含水量相关性分析结果表明,不同影响区植物WUE_(inst)与土壤含水量均呈显著负相关关系,但相对于无隧道影响区,隧道影响区植物WUE_(inst)对土壤含水量的变化更加敏感。以上结果表明,隧道建设导致地下水资源漏失,土壤含水量减少,进而改变了植物水分利用特性,使隧道影响区植物种应对一定程度的水分胁迫时采取更保守的水分利用策略。     

肥沃耕层构建对东北黑土区旱地土壤肥力和玉米产量的影响

有机物料还田是提高土壤肥力、改善土壤结构和增加作物产量的重要农艺措施之一。本研究通过分析有机物料深混还田构建肥沃耕层后土壤的有机质、速效养分含量和玉米产量,明确了黑土区不同土壤类型旱地土壤肥力指标和玉米产量对肥沃耕层构建方式的响应特征,以期为实现东北黑土区旱地保护性利用和农业可持续发展提供科学依据。采用小区试验与大区示范相结合的方式,在黑龙江省、吉林省和辽宁省选取9个生态类型区作为试验点,土壤类型包括黑土(中厚黑土和薄层黑土)、草甸土、黑钙土、白浆土、棕壤、暗棕壤和褐土。每个试验点均设置了玉米秸秆深混构建肥沃耕层(CF_Ⅰ)、秸秆配合有机肥深混构建肥沃耕层(CF_Ⅱ)和无有机物料还田(CK)3个处理。其中,CF_Ⅰ、CF_Ⅱ处理的小区试验和大区示范的秸秆还田量分别为10000 kg·hm^-2和全量还田,CF_Ⅱ处理的有机肥施用量为30000 t·hm^-2;CF_Ⅰ和CF_Ⅱ处理中有机物料的还田深度均为0~35 cm。结果表明: 不同土壤类型旱地的土壤肥力差异较大,不同土层表现为亚耕层土壤肥力小于耕层土壤,其中暗棕壤和白浆土尤为突出;棕壤、褐土耕层和亚耕层的土壤肥力均偏低;黑土和草甸土的质地比较黏重和犁底层较厚。在试验时间为两年以上的5个试验点中,与CK相比,CF_Ⅰ和CF_Ⅱ处理耕层的土壤有机质、碱解氮、速效磷和速效钾含量平均增加1.85 g·kg^-1、20.16 mg·kg^-1、1.56 mg·kg^-1和17.2 mg·kg^-1,亚耕层较耕层增加了2.09 g·kg^-1、12.06 mg·kg^-1、2.18 mg·kg^-1和3.84 mg·kg^-1。与CK相比,CF_Ⅰ处理显著增加了耕作层和亚耕层土壤有机质和速效磷含量,CF_Ⅱ处理显著增加了耕作层和亚耕层的全部土壤肥力指标,说明肥沃耕层构建是提高土壤肥力的重要途径,其中玉米秸秆配施有机肥是快速提升土壤肥力的有效方法。受不同地区水热条件和土壤类型等的影响,不同试验区的玉米产量差异较大;不同处理间差异显著,表现为CF_Ⅱ>CF_Ⅰ>CK,说明肥沃耕层构建方式在不同生态类型区均能有效提高玉米产量。采用玉米秸秆或者玉米秸秆配合有机肥深混的肥沃耕层构建方式能够同步培肥耕层和亚耕层土壤,提高玉米产量。不同生态类型区应根据土壤类型、有机物料来源等采取相应的肥沃耕层构建方式,建议在有机肥源充足的区域,优先采用秸秆配合有机肥深混构建肥沃耕层。     

Revisiting the phosphotyrosine binding pocket of Fyn SH2 domain led to the identification of novel SH2 superbinders.

Protein engineering through directed evolution is an effective way to obtain proteins with novel functions with the potential applications as tools for diagnosis or therapeutics. Many natural proteins have undergone directed evolution in vitro in the test tubes in the laboratories worldwide, resulting in the numerous protein variants with novel or enhanced functions. we constructed here an SH2 variant library by randomizing 8 variable residues in its phosphotyrosine (pTyr) binding pocket. Selection of this library by a pTyr peptide led to the identification of SH2 variants with enhanced affinities measured by EC50. Fluorescent polarization was then applied to quantify the binding affinities of the newly identified SH2 variants. As a result, three SH2 variants, named V3, V13 and V24, have comparable binding affinities with the previously identified SH2 triple‐mutant superbinder. Biolayer Interferometry assay was employed to disclose the kinetics of the binding of these SH2 superbinders to the phosphotyrosine peptide. The results indicated that all the SH2 superbinders have two‐orders increase of the dissociation rate when binding the pTyr peptide while there was no significant change in their associate rates. Intriguingly, though binding the pTyr peptide with comparable affinity with other SH2 superbinders, the V3 does not bind to the sTyr peptide. However, variant V13 and V24 have cross‐reactivity with both pTyr and sTyr peptides. The newly identified superbinders could be utilized as tools for the identification of pTyr‐containing proteins from tissues under different physiological or pathophysiological conditions and may have the potential in the therapeutics.