A new specimen of Orthosuchus stormbergi (Nash 1968) and a review of the distribution of Southern African Lower Jurassic crocodylomorphs

Orthosuchus stormbergi (Nash 1968) is a rare member of the Lower Jurassic crocodylomorph fauna of Southern Africa. Here we report on a new specimen, consisting of a nearly complete dentary bone, and a previously collected specimen that can confidently be referred to this taxon. The dentary presents several features of utility for generic-level identification of Southern African crocodylomorphs, and furthermore the anatomy of this specimen allows for a modest revision of the generic diagnosis. Furthermore, it provides an opportunity to reassess differences in dentary morphology between basal South African crocodylomorphs with the intention of refining taxonomic identification. Finally, we review the stratigraphic provenance of all of Southern Africa’s known crocodylomorph taxa, and show that most are confined to the uppermost Elliot Formation. Protosuchus, Litargosuchus, Notochampsa, and Orthosuchus have first appearance data in uppermost Elliot Formation. Only Notochampsa has a confirmed last appearance datum in the Lower Clarens Formation. These findings have implications with regards to the true position of the Triassic-Jurassic Boundary, and paleoenvironmental pressures acting on the Crocodylomorpha over the boundary of the Upper Elliot and Lower Clarens Formations.     

Sequence boundary and related sedimentary and diagenetic facies formed on Middle Permian mid-oceanic carbonate platform: Core observation of Akiyoshi Limestone,Southwest Japan

Detailed core observation of the Akiyoshi Limestone, Southwest Japan, reveals a sequence boundary and related sedimentary and diagenetic facies formed on a late Murgabian (Middle Permian) mid-oceanic carbonate platform. The sequence boundary lies upon karstified bioclastic grainstone and is overlain by peritidal lime- and dolo-mudstone. The karstified bioclastic grainstone, which had been affected by subaerial exposure and early diagenetic processes, is characterized by crystal silts, prismatic, bladed and dogtooth cements, blackened limestone features, and alveolar textures. The overlying peritidal lime- and dolo-mudstone is 8 m thick and exhibits fenestrae, fissures, laminations, black pebbles, and low-diversity biota composed exclusively of ostracodes and calcispherids. The sequence boundary almost coincides with a major fusulinoidean biostratigraphic boundary. A sea-level fall in the late Murgabian resulted in a biotic turnover and formed the sequence boundary and the karst textures. The following relatively slow transgression resulted in the deposition of the thick transgressive peritidal unit.     

Molecular dynamics and interactions for creation of stimulation-induced stabilized rafts from small unstable steady-state rafts

We have evaluated the sizes and lifetimes of rafts in the plasma membrane from the existing literature, with a special attention paid to their intrinsically broad distributions and the limited time and space scales that are covered by the observation methods used for these studies. Distinguishing the rafts in the steady state (reserve rafts) from those after stimulation or unintentional crosslinking of raft molecules (stabilized receptor-cluster rafts) is critically important. In resting cells, the rafts appear small and unstable, and the consensus now is that their sizes are smaller than the optical diffraction limit (250 nm). Upon stimulation, the raft-preferring receptors are clustered, inducing larger, stabilized rafts, probably by coalescing small, unstable rafts or cholesterol-glycosphingolipid complexes in the receptor clusters. This receptor-cluster-induced conversion of raft types may be caused by suppression of alkyl chain isomerization and the lipid lateral diffusion in the cluster, with the aid of exclusion of cholesterol from the bulk domain and the boundary region of the majority of transmembrane proteins. We critically inspected the possible analogy to the boundary lipid concept. Finally, we propose a hypothesis for the coupling of GPI-anchored receptor signals with lipid-anchored signaling molecules in the inner-leaflet raft.     

根据孢粉资料确定伏尔加地区弗拉阶和法门阶界线

俄罗斯伏尔加格勒伏尔加地区上泥盆统弗拉阶和法门阶的界线以3种剖面类型为代表。第一种类型的界线剖面广泛分布于俄罗斯地台,但两阶之间有沉积间断。第二种类型剖面地层发育较完整,即Volgogradian层直覆于Livendian层之上。前者以Corbulispora viminea-Geminospora vasjamica孢子组合带为特征。第三种类型剖面存在于前里海(Pre-Caspian)凹陷的西侧,是最近根据孢粉资料确定的;地层剖面不完整,在中弗拉阶的Semilukian层有剥蚀面,上覆以不同时代的(弗拉期或法门期)盖层。     

Organic tissues in rotating bioreactors: fluid-mechanical aspects, dynamic growth models, and morphological evolution

This analysis deals with advances in tissue-engineering models and computational methods as well as with novel results on the relative importance of "controlling forces" in the growth of organic constructs. Specifically, attention is focused on the rotary culture system, because this technique has proven to be the most practical solution for providing a suitable culture environment supporting three-dimensional tissue assemblies. From a numerical point of view, the growing biological specimen gives rise to a moving boundary problem. A "volume-of-fraction" method is specifically and carefully developed according to the complex properties and mechanisms of organic tissue growth and, in particular, taking into account the sensitivity of the construct/liquid interface to the effect of the fluid-dynamic shear stress (it induces changes in tissue metabolism and function that elicit a physiological response from the biological cells). The present study uses available data to introduce a set of growth models. The surface conditions are coupled to the transfer of mass and momentum at the specimen/culture-medium interface and lead to the introduction of a group of differential equations for the nutrient concentration around the sample and for the evolution of tissue mass displacement. The models are then used to show how the proposed surface kinetic laws can predict (through sophisticated numerical simulations) many of the known characteristics of biological tissues grown using rotating-wall perfused vessel bioreactors. This procedure provides a validation of the models and associated numerical method and also gives insight into the mechanisms of the phenomena. The interplay between the increasing size of the tissue and the structure of the convective field is investigated. It is shown that this interaction is essential in determining the time evolution of the tissue shape. The size of the growing specimen plays a critical role with regard to the intensity of convection and the related shear stresses. Convective effects, in turn, are found to impact growth rates, tissue size, and morphology, as well as the mechanisms driving growth. The method exhibits novel capabilities to predict and elucidate experimental observations and to identify cause-and-effect relationships.     

A repressor element in the 5'-untranslated region of human Pax5 exon 1A

Five members of the RecQ helicase family, RECQL, WRN, BLM, RTS and RECQL5, have been found in human and three of them (WRN, BLM and RTS) were disclosed to be the genes responsible for Werner, Bloom and Rothmund–Thomson syndromes, respectively. RECQL5 (RecQ helicase protein-like 5) was isolated as the fifth member of the family in humans through a search of homologous expressed sequence tags. The gene is expressed with at least three alternative splicing products, , β and γ. Here, we isolated mouse RECQL5β and determined the DNA sequence of full-length cDNA as well as the genome organization and chromosome locus. The mouse RECQL5β gene consists of 2949 bp coding 982 amino acid residues. Comparison of amino acid sequence among human (Homo sapiens), mouse (Mus musculus), Drosophila melanogaster and Caenorhabditis elegans RECQL5β homologs revealed three portions of highly conserved regions in addition to the helicase domain. Nineteen exons are dispersed over 40 kbp in the genome and all of the acceptor and donor sites for the splicing of each exon conform to the GT/AG rule. The gene is localized to the mouse chromosome 11E2, which has a syntenic relation to human 17q25.2-q25.3 where human RECQL5β exists. Our genetic characterizations of the mouse RECQL5β gene will contribute to functional studies on the RECQL5β products.     

Potential effects of interaction between CO2 and temperature on forest landscape response to global warming

Projected temperature increases under global warming could benefit southern tree species by providing them the optimal growing temperature and could be detrimental to northern species by exposing them to the supra optimal growing temperatures. This benefit-detriment trade-off could increase the competitive advantage of southern species in the northern species range and cause the increase or even dominance of southern species in the northern domain. However, the optimum temperature for photosynthesis of C3 plants may increase due to CO₂ enrichment. An increase in the optimum temperature could greatly reduce the benefit-detriment effect. In this study, we coupled a forest ecosystem process model (PnET-II) and a forest GAP model (LINKAGES) with a spatially dynamic forest landscape model (LANDIS-II) to study how an optimum temperature increase could affect forest landscape response due to global warming. We simulated 360 years of forest landscape change in the Boundary Water Canoe Area (BWCA) in northern Minnesota, which is transitional between boreal and temperate forest. Our results showed that, under the control scenario of continuing the historic 1984–1993 mean climate (mainly temperature, precipitation and CO₂), the BWCA will become a spruce-fir dominated boreal forest. However, under the scenario of predicted climatic change [the 2000–2099 climates are predicted by Canadian Climate Center (CCC), followed by 200 years of continuing the predicted 2090–2099 mean climate], the BWCA will become a pine-dominated mixed forest. If the optimum temperature increases gradually with [CO₂] (the increase in optimum temperature is assumed to change gradually from 0 °C in year 2000 to 5 °C in year 2099 when [CO₂] reaches 711 ppm and stabilizes at 5 °C after year 2099), the BWCA would remain a fir-dominated boreal forest in areas with relatively high water-holding capacity, but not in areas with relatively low water-holding capacity. Our results suggest that the [CO₂] induced increases in optimum temperature could substantially reduce forest landscape change caused by global warming. However, not all tree species would be able to successfully adapt to future warming as predicted by CCC, regardless of optimum temperature acclimations.     

Earliest Triassic microbialites in the South China block and other areas: controls on their growth and distribution

Earliest Triassic microbialites (ETMs) and inorganic carbonate crystal fans formed after the end-Permian mass extinction (ca. 251.4 Ma) within the basal Triassic Hindeodus parvus conodont zone. ETMs are distinguished from rarer, and more regional, subsequent Triassic microbialites. Large differences in ETMs between northern and southern areas of the South China block suggest geographic provinces, and ETMs are most abundant throughout the equatorial Tethys Ocean with further geographic variation. ETMs occur in shallow-marine shelves in a superanoxic stratified ocean and form the only widespread Phanerozoic microbialites with structures similar to those of the Cambro-Ordovician, and briefly after the latest Ordovician, Late Silurian and Late Devonian extinctions. ETMs disappeared long before the mid-Triassic biotic recovery, but it is not clear why, if they are interpreted as disaster taxa. In general, ETM occurrence suggests that microbially mediated calcification occurred where upwelled carbonate-rich anoxic waters mixed with warm aerated surface waters, forming regional dysoxia, so that extreme carbonate supersaturation and dysoxic conditions were both required for their growth. Long-term oceanic and atmospheric changes may have contributed to a trigger for ETM formation. In equatorial western Pangea, the earliest microbialites are late Early Triassic, but it is possible that ETMs could exist in western Pangea, if well-preserved earliest Triassic facies are discovered in future work.