Bioaccumulation of lead by the lichen Acarospora smaragdula from smelter emissions

Accumulation of lead in the crustose lichen Acarospora smaragdula sensu lato is reported in the vicinity of an ore- processing plant where it is subjected to acidification and metal particulate fallout. A combination of light microscopy, X-ray element mapping, field emission scanning electron microscopy (FESEM) and other analytical techniques identifies Pb accumulation within specific fungal tissues derived from smelter particles (PM10s). No Pb was detected within the photobiont layer. Our studies suggest that Pb is highly mobile under the prevailing acidic conditions, and is fixed within the lichen cortex and melanized apothecia. Lead is also accumulated within the medulla and at the rock–lichen interface where it may precipitate as amorphous botryoidal encrustations on medullary hyphae and iron-rich particles. Modern FESEMs and microprobes enable analysis of minute quantities of material, and are important tools in understanding the fate of metals within lichens necessary to develop their use as predictive and sensitive bioindicators of aerial particulate contaminants. We suggest that crustose lichens, hitherto largely ignored in metal pollution studies, may be useful bioindicators of aerial particulate contaminants in polluted areas where macrolichens are absent.     

AIRBORNE ALGAE: THEIR PRESENT STATUS AND RELEVANCE1

Ongoing climatic changes coupled with various natural processes and the outcomes of human activities are not only loading the atmosphere with diverse kinds of biological particles but also changing their prevalence and spatial distribution. Despite having considerable ecological and economic significance, including their possible impact on human health, airborne algae are the least‐studied organisms in both aerobiological and phycological studies. The present review has been written to bring together all available information, including a brief survey of the literature, the ecology of airborne algae, mechanisms involved in their aerosolization, the role of environmental factors in shaping the structure and composition of aero‐algal flora, and other significant information associated with airborne algae. This review provides information on methodological approaches and related problems, along with suggestions for areas of future research on airborne algae.     

Landscape‐scale lidar analysis of aboveground biomass distribution in secondary Brazilian Atlantic Forest

Secondary forests account for more than half of tropical forests and represent a growing carbon sink, but rates of biomass accumulation vary by a factor of two or more even among plots in the same landscape. To better understand the drivers of this variability, we used airborne lidar to measure forest canopy height and estimate biomass over 4529 ha at Serra do Conduru Park in Southern Bahia, Brazil. We measured trees in 30 georeferenced field plots (0.25‐ha each) to estimate biomass using allometry. Then we estimated aboveground biomass density (ABD) across the lidar study area using a statistical model developed from our field plots. This model related the 95th percentile of the distribution of lidar return heights to ABD. We overlaid this map of ABD on a Landsat‐derived forest age map to determine rates of biomass accumulation. We found rapid initial biomass regeneration (~6 Mg/ha yr), which slowed as forests aged. We also observed high variability in both height and biomass across the landscape within forests of similar age. Nevertheless, a regression model that accounted for spatial autocorrelation and included forest age, slope, and distance to roads or open areas explained 62 and 77 percent of the landscape variation in ABD and canopy height, respectively. Thus, while there is high spatial heterogeneity in forest recovery, and the drivers of this heterogeneity warrant further investigation, we suggest that a relatively simple set of predictor variables is sufficient to explain the majority of variance in both height and ABD in this landscape.     

基于激光雷达数据的物种分布模拟: 以美国加州内华达山脉南部区域食鱼貂分布模拟为例

生态位模型通过拟合物种分布与环境变量之间的关系提供物种空间分布预测, 在生物多样性研究中有广泛应用。激光雷达(LiDAR)是一种新兴的主动遥感技术, 已被大量应用于森林三维结构信息的提取, 但其在物种分布模拟的应用研究比较缺乏。本研究以美国加州内华达山脉南部地区的食鱼貂(Martes pennanti)的分布模拟为例, 探索LiDAR技术在物种分布模拟中的有效性。生态位模型采用5种传统多类分类器, 包括神经网络、广义线性模型、广义可加模型、最大熵模型和多元自适应回归样条模型, 并使用正样本-背景学习(presence and background learning, PBL)算法进行模型校正; 同时对这5种模型使用加权平均进行模型集成, 作为第6个模型。此外, 一类最大熵模型也被用于模拟该物种的空间分布。模型的连续输出和二值输出分别使用AUC (area under the receiver operating characteristic curve)以及基于正样本-背景数据的评价指标F_pb进行评价。结果表明, 仅考虑气候因子(温度和降水)时, 7个模型的AUC和F_pb平均值分别为0.779和1.077; 当考虑LiDAR变量(冠层容重、枝下高、叶面积指数、高程、坡度等)后, AUC和F_pb分别为0.800和1.106。该研究表明, LiDAR数据能够提高食鱼貂空间分布的预测精度, 在物种分布模拟方面存在一定的应用价值。     

遥感技术在鸟类生态学研究中的应用

获取鸟类活动及生境信息是鸟类生态学研究的基础, 而遥感技术弥补了传统野外调查方法的缺陷, 提供了获取多种信息的新途径。应用遥感技术的鸟类生态学研究热点从最初的种群行为观察, 到栖息地选择, 再到生境适宜性、破碎化及人为干扰探究等, 随着技术的不断发展也在扩展和变化。不同波段或组合下的遥感技术各有所长。光学遥感应用广泛, 尤其是信息量较大的红外波段图像和作为野外鸟巢及物种活动监测常用工具的红外相机; 多光谱图像常用于栖息地制图以及地物识别, 高空间分辨率的数据甚至可对鸟类种群进行直接计数; 高光谱数据则可对光谱特征相似的地物进行更为精确的区分和反演; 激光雷达遥感主要用于栖息地植被结构的三维探测, 为了解鸟类栖息地选择提供更好的依据。微波遥感在飞鸟探测上应用颇多, 近年来多极化数据在复杂栖息地精确制图上也具有优势, 但成本较高、解译复杂且推广度较低。在实际应用中, 遥感数据时空尺度的选择会影响研究结果, 部分遥感反演参数也缺乏生态学意义。多源遥感数据的结合应用能够提升制图分类的精度, 实现数据的时空分辨率互补, 优化鸟类生态研究所需参数。未来的遥感技术在鸟类生态学中的应用应致力于提供更加明确的光谱信息、相对简便的解译方法, 以及更为合理的多源数据组合方式等。     

遥感在生物多样性研究中的应用进展

随着人口的持续增长, 人类经济活动对自然资源的利用强度不断升级以及全球气候变暖, 全球物种正以前所未有的速度丧失, 生物多样性成为了全球关注的热点问题。传统生物多样性研究以地面调查方法为主, 重点关注物种或样地水平, 但无法满足景观尺度、区域尺度以及全球尺度的生物多样性保护和评估需求。遥感作为获取生物多样性信息的另一种手段, 近年来在生物多样性领域发展迅速, 其覆盖广、序列性以及可重复性等特点使之在大尺度生物多样性监测和制图以及评估方面具有极大优势。本文主要通过文献收集整理, 从观测手段、研究尺度、观测对象和生物多样性关注点等方面综述了遥感在生物多样性研究中的应用现状, 重点分析不同遥感平台的技术优势和局限性, 并探讨了未来遥感在生物多样性研究的应用趋势。遥感平台按观测高度可分为近地面遥感、航空遥感和卫星遥感, 能够获取样地-景观-区域-洲际-全球尺度的生物多样性信息。星载平台在生物多样性研究中应用最多, 航空遥感的应用研究偏少主要受飞行成本限制。近地面遥感作为一个新兴平台, 能够直接观测到物种的个体, 获取生物多样性关注的物种和种群信息, 是未来遥感在生物多样性应用中的发展方向。虽然遥感技术在生物多样性研究中的应用存在一定的局限性, 未来随着传感器发展和多源数据融合技术的完善, 遥感能更好地从多个尺度、全方位地服务于生物多样性保护和评估。     

Estimating plant abundance using inflated beta distributions: Applied learnings from a lichen–caribou ecosystem

Quantifying abundance and distribution of plant species can be difficult because data are often inflated with zero values due to rarity or absence from many ecosystems. Terrestrial fruticose lichens (Cladonia and Cetraria spp.) occupy a narrow ecological niche and have been linked to the diets of declining caribou and reindeer populations (Rangifer tarandus) across their global distribution, and conditions related to their abundance and distribution are not well understood. We attempted to measure effects related to the occupancy and abundance of terrestrial fruticose lichens by sampling and simultaneously modeling two discrete conditions: absence and abundance. We sampled the proportion cover of terrestrial lichens at 438 vegetation plots, including 98 plots having zero lichens. A zero‐inflated beta regression model was employed to simultaneously estimate both the absence and the proportion cover of terrestrial fruticose lichens using fine resolution satellite imagery and light detection and ranging (LiDAR) derived covariates. The probability of lichen absence significantly increased with shallower groundwater, taller vegetation, and increased Sphagnum moss cover. Vegetation productivity, Sphagnum moss cover, and seasonal changes in photosynthetic capacity were negatively related to the abundances of terrestrial lichens. Inflated beta regression reliably estimated the abundance of terrestrial lichens (R² = .74) which was interpolated on a map at fine resolution across a caribou range to support ecological conservation and reclamation. Results demonstrate that sampling for and simultaneously estimating both occupancy and abundance offer a powerful approach to improve statistical estimation and expand ecological inference in an applied setting. Learnings are broadly applicable to studying species that are rare, occupy narrow niches, or where the response variable is a proportion value containing zero or one, which is typical of vegetation cover data.     

The air-borne distribution of zoonotic agents from livestock waste spreading and microbiological risk to fresh produce from contaminated irrigation sources

Aims:  To assess the risks of zoonotic agents in dissemination of livestock wastes into the environment by airborne distribution. To subsequently assess the survival time of zoonotic agents, introduced in irrigation water, on the phylloplane of produce.
Methods and Results:  An Escherichia coli marker was introduced into pig slurry which was spread using a rain gun sprayer. Air sampling was undertaken to determine the distance reached by the marker. No recoveries were observed at a distance of 250 m. Borehole water, contaminated with zoonotic agents, was used to irrigate field plots sown with lettuce and spinach. Decline in bacterial numbers on the phylloplane was observed with time. After initial rapid decreases, we were unable to detect any pathogen from the phylloplane, 1 month after contamination.
Conclusions:  These preliminary results suggest that the risks to public health from the aerosolized spread of bacteria during slurry spreading by rain gun are low. Although, zoonotic agents on crop phylloplanes perish quickly, the risks of overhead irrigation of fresh produce 3 weeks before harvest should still be considered.
Significance and Impact of the Study:  These preliminary results improve our understanding on the fate of zoonotic agents in the environment. Spreading liquid livestock wastes by an airborne mechanism may not pose a significant public health risk. Detection of zoonotic agents 3 weeks after contamination of lettuce and spinach means that consideration should be given by the farmers until the time of harvest, when irrigating fresh produce with water that may have been directly or indirectly contaminated by livestock wastes.