Devonian carbonate buildup facies in an intra-oceanic island arc (Tamworth Belt, New South-Wales, Australia)

Summary  Biohermal and biostromal buildups were investigated in late Early and Middle Devonian carbonate complexes of the Tamworth Belt. The buildup types and subtypes were studied in three regions (Yarramanbully, Sulcor and, Wyaralong') to clarify their paleo-environmental position. Two stages of development are recognized: Incipient bioherms and bioherms. Incipient bioherms are carbonate buildups with organisms which commonly form true bioherms. They dominate the sediment with small growth forms but are not prolific enough to build large bio-frameworks. Small nodular and globular stromatoporoids characterize the incipient bioherms and are interpreted as stunted growth forms. In one location (‘Wyaralong’) the coarse stromatoporoid calcarenite represents a fore-reef facies, at Sulcor a shallow subtidal setting with moderate water energy can be deduced. The bioherms can be sub-divided into stromatoporoid-, stromatoporoid-Stachyodes-, and stromatoporoid-rugose coral bioherms. Their variable composition probably reflects growth and deposition in different zones of a reef complex and/or different proximity to areas of denundation indicated by high siliciclastic input. In the Tamworth region true bioherms occur only in the Moore Creek Limestone Member (Middle Devonian), and not in older carbonate successions. Biostromes are sub-divided into (1) incipient biostromes with stromatoporoid-heliolitid biostromes and alveolitid biostromes; (2) aggregate biostromes withAmphipora andStachyodes biostromes; (3) stratified biostromes; (4) mixed aggregate/stratified biostromes. The different types of biostromes are not limited to specific time-intervals, but rather to environmental conditions.

Partial purification and characterization of cyclic AMP phosphodiesterases from Funaria hygrometrica

Natural-abundance ¹³C NMR spectroscopy at 15.04 MHz has been used to examine the effects of pH, calcium, and lanthanide ions on the polypeptide cardiac stimulant Anthopleurin-A in aqueous solution. The carboxyl resonance from the aspartic acid residue not observed in a previous study (R. S. Norton and T. R. Norton, 1979, J. Biol. Chem.254, 10220–10226) has been identified and an apparent pK_a of 3.4 obtained. More accurate estimates have been derived for the apparent pK_a values of the two histidine residues. Binding of Ca²⁺ ions has been found by equilibrium dialysis and ¹³C NMR to be weak (K_d > 0.1 M). The interaction with lanthanide ions is slightly stronger, but binding occurs at the C terminus as well as at a site involving one or both of the aspartate carboxylate groups. These results suggest that possible Anthopleurin-A-induced calcium translocation in the myocardial cell is a secondary effect. The interaction of Anthopleurin-A with lipid monolayers has also been examined. Binding occurs to neutral and zwitterionic lipids, but is stronger with negatively charged lipids, particularly cardiolipin. This interaction is also influenced by the presence of Ca²⁺ ions. The implications of these results for the mechanism of action of this polypeptide are discussed.     

The transformation of phthalaldehydate by phthalate-grown Micrococcus strain 12B

Micrococcus strain 12B, grown with phthalate, transformed the phthalate analog, phthalaldehydate (2-formylbenzoate), to 3,4-dihydroxyphthalaldehydate which was isolated and identified as its lactol. An ¹⁸O₂ incorporation experiment indicated that a dioxygenase mechanism was involved. It is proposed by analogy, that phthalate is metabolized through cis-3,4-dihydro-3,4-dihydroxyphthalate and 3,4-dihydroxyphthalate by this bacterium.     

The effect of the release of an artificial discharge of water on invertebrate drift in the R. Wye,Wales

An artificial discharge of water (3.0 m³/sec), over a 48 h period, from an impoundment into the R. Wye did not substantially affect water temperature or concentrations of dissolved oxygen and suspended solids at a site 16 km below the impoundment. However, the load of suspended material on the second day of the release was about 10 times greater than the pre-release load. The total number of drifting macroinvertebrates on the first and second days of the release were about 7 and 3 times greater than the number on the day preceding the release. The initial increase in flow at 15.00 h resulted in an immediate increase in the number of drifting larvae of Rheotanytarsus, a tubicolous chironomid. Subsequently there was an enhanced night-time increase in the total number of drifting invertebrates, particularly the mayfly, Ephemerella ignita (Poda), and this also occurred on the second night of the release. Increases in the number of drifting Rheotanytarsus and Ephemerella, the most abundant invertebrates, resulted in increase in drift density.Authors' address Llysdinam Field Centre, UWIST, Newbridge-on-Wye, Llandrindod Wells, Powys, Wales.     

Recent vegetation history of Drygarn Fawr (Elenydd SSSI), Cambrian Mountains,Wales: implications for conservation management of degraded blanket mires

Many areas of blanket mire in Britain display apparently degraded vegetation, having a limited range of ericaceous and Sphagnum species. Data are presented here from Wales from the upland locality of Drygarn Fawr (Elenydd SSSI), which is dominated overwhelmingly by Molinia caerulea. Palaeoecological techniques were used to chronicle vegetation history and to determine the nature and timing of vegetation changes, as an aid to devising conservation management and restoration strategies. Although for the past 2000 years the pollen and plant macrofossil data indicate some evidence for cyclic vegetation change, they demonstrate that here the major vegetation change post-dated the start of the industrial revolution. The palaeoecological data show a greater proportion of Sphagnum than currently. Local extinction of some species (e.g., Myrica gale) apparently took place in Medieval times, but most of the degradation and floral impoverishment apparently occurred during the 20th Century. The implications for conservation management are far-reaching. The overwhelming dominance of Molinia is clearly unprecedented. While it was locally present for hundreds of years, some factor(s)—possibly a change in grazer and grazing regime—encouraged its recent ascendancy in the 20th Century. Consequently, any management attempts to reduce the pre-eminence of Molinia would not be countering an ingrained, long-established dominance. It is suggested that investigation of degraded blanket mires elsewhere by historical and multi-proxy palaeoecological techniques—through multiple, dated cores to track species extinctions and directional vegetation changes—would help ascertain previous mire floras and so indicate a range of restoration targets for mire vegetation.     

Habitat usage of Daubenton's bat (Myotis daubentonii), common pipistrelle (Pipistrellus pipistrellus), and soprano pipistrelle (Pipistrellus pygmaeus) in a North Wales upland river catchment

Distributions of Daubenton's bat (Myotis daubentonii), common pipistrelle, (Pipistrellus pipistrellus), and soprano pipistrelle (Pipistrellus pygmaeus) were investigated along and altitudinal gradient of the Lledr River, Conwy, North Wales, and presence assessed in relation to the water surface condition, presence/absence of bank‐side trees, and elevation. Ultrasound recordings of bats made on timed transects in summer 1999 were used to quantify habitat usage. All species significantly preferred smooth water sections of the river with trees on either one or both banks; P. pygmaeus also preferred smooth water with no trees. Bats avoided rough and cluttered water areas, as rapids may generate high‐frequency echolocation‐interfering noise and cluttered areas present obstacles to flight. In lower river regions, detections of bats reflected the proportion of suitable habitat available. At higher elevations, sufficient habitat was available; however, bats were likely restricted due to other factors such as a less predictable food source. This study emphasizes the importance of riparian habitat, bank‐side trees, and smooth water as foraging habitat for bats in marginal upland areas until a certain elevation, beyond which bats in these areas likely cease to forage. These small‐scale altitudinal differences in habitat selection should be factored in when designing future bat distribution studies and taken into consideration by conservation planners when reviewing habitat requirements of these species in Welsh river valleys, and elsewhere within the United Kingdom.     

Twenty years of vegetation change in five long-unburned Florida plant communities

Abstract. Rates and directions of change over a 20-yr interval in five long-unburned (> 60 yr) plant communities were studied using multivariate analyses and compositional vectors. The study sites were located in fire and summer-drought adapted, xerophytic vegetation with many endemics on acidic, nutrient-poor, sandy soils in south-central peninsular Florida. Sizes of individual stems from 72 sets of nested permanent quadrats were measured in 1969, 1979, and 1989. Patterns of vegetation change differed by community. Flatwood and bayhead quadrats showed rapid increases in densities and basal areas of Persea borbonia (red bay). In the southern ridge sandhill community, evergreen clonal Quercus species (oaks) and Pinus clausa (sand pine) increased in dominance and grasses declined. Oaks (especially Q. geminata) also increased in importance in scrubby flatwoods. Sand pine scrub was relatively stable in composition, but experienced marked structural changes due to substantial sand pine mortality (18% during 1969–1979, 39% during 1979–1989). Compositional changes in the absence of fire were greatest whereas structural changes were least in southern ridge sandhill and scrubby flatwoods, both communities which normally receive frequent, recurrent fire. Compositional changes were lowest in sand pine scrub, which is normally infrequently burned. Classic successional patterns such as species replacement, decreases in density, and increases in basal area were generally lacking. Tree densities increased in two of four community types (southern ridge sandhill, scrubby flatwoods); while basal area declined in the flatwoods/bayhead and sand pine scrub sites. Directions of compositional vectors included divergent, opposing, and complex patterns, suggesting vegetation change in the absence of fire has a strong stochastic component.     

Differential Proteome and Interactome Analysis Reveal the Basis of Pleiotropy Associated With the Histidine Methyltransferase Hpm1p

The methylation of histidine is a post-translational modification whose function is poorly understood. Methyltransferase histidine protein methyltransferase 1 (Hpm1p) monomethylates H243 in the ribosomal protein Rpl3p and represents the only known histidine methyltransferase in Saccharomyces cerevisiae. Interestingly, the hpm1 deletion strain is highly pleiotropic, with many extraribosomal phenotypes including improved growth rates in alternative carbon sources. Here, we investigate how the loss of histidine methyltransferase Hpm1p results in diverse phenotypes, through use of targeted mass spectrometry (MS), growth assays, quantitative proteomics, and differential crosslinking MS. We confirmed the localization and stoichiometry of the H243 methylation site, found unreported sensitivities of Δhpm1 yeast to nonribosomal stressors, and identified differentially abundant proteins upon hpm1 knockout with clear links to the coordination of sugar metabolism. We adapted the emerging technique of quantitative large-scale stable isotope labeling of amino acids in cell culture crosslinking MS for yeast, which resulted in the identification of 1267 unique in vivo lysine–lysine crosslinks. By reproducibly monitoring over 350 of these in WT and Δhpm1, we detected changes to protein structure or protein–protein interactions in the ribosome, membrane proteins, chromatin, and mitochondria. Importantly, these occurred independently of changes in protein abundance and could explain a number of phenotypes of Δhpm1, not addressed by expression analysis. Further to this, some phenotypes were predicted solely from changes in protein structure or interactions and could be validated by orthogonal techniques. Taken together, these studies reveal a broad role for Hpm1p in yeast and illustrate how crosslinking MS will be an essential tool for understanding complex phenotypes.     

Trans-bilayer pseudocontact shifts produced by lanthanide ions in the 1H and 31P-nmr spectra of phospholipid vesicular membranes and their temperature variation

1. Shifts in the ¹H and ³¹P-nmr signals originating from the outer and inner phosphorylcholine head-groups and from the lipid acyl chains are observed when phosphatidylcholine vesicles are treated with increasing extravesicular concentrations of the lanthanides Eu³⁺, Pr³⁺, Yb³⁺, and Dy³⁺. 2. The addition of KNCS to increase the binding of the lanthanide ions to the outer head-groups is used to demonstrate that the intravesicular group shifts are not caused by bulk susceptibility effects. 3. The magnitude and direction of the observed shifts in the ¹H-nmr spectrum are shown to be consistent with (a) pseudocontact interaction of the paramagnetic lanthanide ions with the outer phospholipid head-groups, (b) current views of the conformation of the phosphatidylcholine head-group in the presence of lanthanides, and (c) a conservation of magnetic field within the vesicles due to their spherical nature. 4. Variation of the shifts with temperature are compared for egg phosphatidylcholine and dipalmitoyl phosphatidylcholine. The temperature variation in shifts is also used to study phase transitions in each monolayer and phase separations in mixed lipid systems.