Tropical rain forest types and soil factors in a watershed area in Guyana

Abstract. An inventory was made of the vegetation and soils of a watershed area of 480 ha in the tropical rain forest of Guyana. 252 plots of 0.05 ha were sampled. In total 111 tree species > 20 cm were recorded. A TWINSPAN analysis resulted in seven groupings. Correspondence Analysis revealed that the major environmental differentiation underlying the floristic variation is according to soil type. Finally, five main forest communities were described. Most sites in the watershed area are characterized by the dominance of one or a few species. Species distribution patterns are strongly determined by soil type and drainage class.     

Upgrading the genome of an elite japonica rice variety Kongyu 131 for lodging resistance improvement

Developing a new rice variety requires tremendous efforts and years of input. To improve the defect traits of the excellent varieties becomes more cost and time efficient than breeding a completely new variety. Kongyu 131 is a high-performing japonica variety with early maturity, high yield, wide adaptability and cold resistance, but the poor-lodging resistance hinders the industrial production of Kongyu 131 in the Northeastern China. In this study, we attempted to improve the lodging resistance of Kongyu 131 from perspectives of both gene and trait. On the one hand, by QTL analysis and fine mapping we discovered the candidate gene loci. The following CRISPR/Cas9 and transgenic complementation study confirmed that Sd1 dominated the lodging resistance and favourable allele was mined for precise introduction and improvement. On the other hand, the Sd1 allelic variant was identified in Kongyu 131 by sequence alignment, then introduced another excellent allelic variation by backcrossing. Then, the two new resulting Kongyu 131 went through the field evaluation under different environments, planting densities and nitrogen fertilizer conditions. The results showed that the plant height of upgraded Kongyu 131 was 17%–26% lower than Kongyu 131 without penalty in yield. This study demonstrated a precise and targeted way to update the rice genome and upgrade the elite rice varieties by improving only a few gene defects from the perspective of breeding.     

Management oriented forest map of South India: thematic derivations

The principles and methods of the vegetation mapping undertaken at the French Institute, Pondicherry, are dealt with herein. Particularly, the characterisation of the different types of vegetation and especially the originality of the method: the dynamic interpretation of the vegetation and the depiction of the bioclimatic conditions. The programme of the forest map of South India at scale 1:250 000, undertaken in collaboration with the forest departments of the concerned states, is then described with special attention given to the source and the collection of data. This map has been conceived to serve as a basic document for the sustainable management of the forests. Three examples of its application are given. They concern the detection of anomalies between the existing forest cover and the prevalent climatic environment; the detection of areas for which protection is urgently needed; the selection of regions showing a particular interest in the field of nature conservation or as gene pool reserve. Finally, an example of a thematic map of sensibility of the forests is given, using the vegetation map as a basis.     

A study of intermediates involved in the folding pathway for recombinant human macrophage colony-stimulating factor (M-CSF): evidence for two distinct folding pathways.

The folding pathway for a 150-amino acid recombinant form of the dimeric cytokine human macrophage colony-stimulating factor (M-CSF) has been studied. All 14 cysteine residues in the biologically active homodimer are involved in disulfide linkages. The structural characteristics of folding intermediates blocked with iodoacetamide reveal a rapid formation of a small amount of a non-native dimeric intermediate species followed by a slow progression via both monomeric and dimeric intermediates to the native dimer. The transition from monomer to fully folded dimer is complete within 25 h at room temperature at pH 9.0. The blocked intermediates are stable under conditions of sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and thus represent various dimeric and folded monomeric species of the protein with different numbers of disulfide bridges. Peptide mapping and electrospray ionization mass spectrometry revealed that a folded monomeric species of M-CSF contained three of the four native disulfide bridges, and this folded monomer also showed some biological activity in a cell-based assay. The results presented here strongly suggest that M-CSF can fold via two different pathways, one involving monomeric intermediates and another involving only dimeric intermediates.     

城市建筑屋顶光伏发电潜力评估方法和模型

建筑屋顶作为闲置的土地资源已成为光伏发电重要的潜在空间,屋顶光伏发电是脱碳电力供应的主要方式,将在实现城市碳中和进程中发挥重要作用。对建筑屋顶光伏发电潜力进行精确评估将有助于分布式光伏的科学规划和合理布局,提升土地利用效率。旨在对建筑屋顶光伏发电潜力影响因素和评估方法,以及光伏发电潜力主要评估模型进行系统性阐述,比较分析不同评估方法的优缺点,总结未来研究的重点方向。现有研究表明,建筑屋顶光伏发电潜力评估已从经验取值发展为定量空间分析,评估尺度、评估精度和评估成本已经成为不同评估方法综合权衡的重点。现有三种评估方法中,采样法计算成本和数据成本较低,但评估结果不确定性较大、精度较低;全面评估法评估精度较高,但数据获取成本和计算成本较高;机器学习法能够高效挖掘大数据潜力,且算法性能显著提升,因而相较于其他方法更适宜大尺度建筑屋顶光伏发电潜力评估。当前建筑屋顶光伏发电潜力评估仍然存在大尺度精细评估缺乏、评估结果不确定性大以及评估模型计算量大等问题。未来研究重点应关注三个方面：1)建立适宜不同区域的高精度简化模型并完善技术潜力评估模型;2)阐明建筑屋顶光伏发电潜力的影响因素,为代表性建筑分类体系...     

1985—2015年中国不同生态系统NDVI时空变化及其对气候因子的响应

植被是陆地生态系统不可或缺的部分,气候是影响其动态变化的重要驱动因素。因此,探究植被的时空变化及其与气候因子的响应关系,有助于理解陆地生态系统的内在演化机制。目前,不同生态系统尺度下的植被动态变化与气候因子的时间响应关系仍未被完整剖析。因此,为了厘清过去30年不同生态系统植被生长对气候因子的响应关系,利用GIMMS NDVI3g数据和气候资料数据,通过Theil-Sen Median趋势分析和Mann-Kendall检验分析了1985—2015年中国陆地NDVI的时空变化特征,结合时间序列相关分析探究了NDVI变化与降水、温度和饱和水汽压差的内部关联,探讨了中国不同生态系统植被与气候因子间的时间响应机制。结果表明：(1) 1985—2015年中国陆地植被呈现改善趋势,年均NDVI先减小后增加,拐点时间在1995年左右,整体变化率为0.5×10^-3/a。农田、森林和草地生态系统的植被显著改善的程度最高,湿地生态系统的植被退化趋势最显著。(2)中国陆地植被NDVI与气候因子的相关性存在明显的空间异质性,且受不同生态系统分区影响。内蒙古高原中部草地生态系统NDVI与降水...     

Meta-analysis of iron metabolism markers levels of Parkinson’s disease patients determined by fluid and MRI measurements

BackgroundParkinson’ s disease (PD) is a progressive neurodegenerative disease featured neuropathologically by the loss of dopaminergic neurons of the substantia nigra (SN). Iron overload in the SN is mainly relative to the pathology and pathogenesis of PD. Postmortem samples of PD has indicated the increased levels of brain iron. However, there is no consensus on iron content through iron-sensitive magnetic resonance imaging (MRI) techniques and the alteration of iron and iron related metabolism markers levels in blood and cerebrospinal fluids (CSF) are still unclear based on the current studies. In this study, we performed a meta-analysis to explore the iron concentration and iron metabolism markers levels through iron-sensitive MRI quantification and body fluid.MethodsA comprehensive literature search was performed in PubMed, EMBASE and Cochrane Library databases for relevant published studies that analyzed iron load in the SN of PD patients using quantitative susceptibility mapping (QSM) or susceptibility weighting imaging (SWI), and iron metabolism markers, iron, ferritin, transferrin, total iron-binding capacity（TIBC）in CSF sample or serum/plasma sample (from Jan 2010 to Sep 2022 to filter these inaccurate researches attributed to unadvanced equipment, inaccurate analytical methods). Standardized mean differences (SMD) or mean differences (MD) and 95% confidence intervals (CI) with random or fixed effect model was used to estimate the results.ResultsForty-two articles fulfilled the inclusion criteria including 19 for QSM, 6 for SWI, and 17 for serum/plasma/CSF sample including 2874 PD patients and 2821 healthy controls (HCs). Our meta-analysis results founded a notable difference for QSM values increase (19.67, 95% CI=18.69–20.64) and for SWI measurements (−1.99, 95% CI= −3.52 to −0.46) in the SN in PD patients. However, the serum/plasma/CSF iron levels and serum/plasma ferritin, transferrin, total iron-binding capacity (TIBC) did not differ significantly between PD patients and HCs.ConclusionsOur meta-analysis showed the consistent increase in the SN in PD patients using QSM and SWI techniques of iron-sensitive MRI measures while no significant differences were observed in other iron metabolism markers levels.     

海南坡鹿围栏种群动态与食物资源关系的初步分析

1986年海南省大田国家级自然保护区在境内设立面积为95公顷的围栏,将86只海南坡鹿分隔成一个孤立的种群。经过3个繁殖年度,种群发展到158只。随着种群数量的增加,坡鹿采食植物的种类密度、高度和频率均明显减少,而坡鹿不食的植物种类则明显增加。种群出生率和年度增长率随种群数量增加而逐年降低,而种群死亡率却有增加趋势。种群密度过高产生的拥挤效应和食物资源不足是造成种群出生率和年度增长率下降的主要原因。本文还就保护区应采取的管理措施,提出了相应的建议。     

Coherent modeling of longitudinal causal effects on binary outcomes

Analyses of biomedical studies often necessitate modeling longitudinal causal effects. The current focus on personalized medicine and effect heterogeneity makes this task even more challenging. Toward this end, structural nested mean models (SNMMs) are fundamental tools for studying heterogeneous treatment effects in longitudinal studies. However, when outcomes are binary, current methods for estimating multiplicative and additive SNMM parameters suffer from variation dependence between the causal parameters and the noncausal nuisance parameters. This leads to a series of difficulties in interpretation, estimation, and computation. These difficulties have hindered the uptake of SNMMs in biomedical practice, where binary outcomes are very common. We solve the variation dependence problem for the binary multiplicative SNMM via a reparameterization of the noncausal nuisance parameters. Our novel nuisance parameters are variation independent of the causal parameters, and hence allow for coherent modeling of heterogeneous effects from longitudinal studies with binary outcomes. Our parameterization also provides a key building block for flexible doubly robust estimation of the causal parameters. Along the way, we prove that an additive SNMM with binary outcomes does not admit a variation independent parameterization, thereby justifying the restriction to multiplicative SNMMs.