长白山红松和鱼鳞云杉在分布上限的径向生长对气候变暖的不同响应

用树木年代学方法研究了近50年来气候变化对长白山自然保护区两种广泛分布的重要乔木树种红松(Pinus koraiensis)和鱼鳞云杉(Picea jezoensis var. komarovii)分布上限树木径向生长的影响, 发现红松年轮宽度具有与温度升高相一致的趋势, 而鱼鳞云杉年轮宽度则出现随温度升高而下降的“分离现象”。对水热条件的正响应是分布上限红松年表与温度保持一致的关键: 生长季的温度和降水的增加对上限红松的生长有促进作用, 且二者对树木生长的有利效应有相互促进的现象; 生长季的延长也有利于红松的生长。升温导致的水分胁迫是造成上限分布的鱼鳞云杉年轮宽度与温度变化趋势相反的重要因素: 分布上限的鱼鳞云杉年表与大多数温度指标均呈负相关关系; 随着温度升高, 年表与年降水量尤其是春季降水量的相关性逐渐由负转正; 各月的高温以及生长季中后期的少雨是形成上限鱼鳞云杉窄轮的主要气候因素, 而较低的各月温度以及生长季后期充足的降水则有利于上限鱼鳞云杉的生长; 此外, 生长季长度没有变化也可能是造成鱼鳞云杉年表序列对温度变化敏感性下降的重要因素。     

林木基因组及功能基因克隆研究概述

在美国能源部资助下, 首个多年生木本植物-- 杨树的全基因组测序已经完成且序列信息已对公众开放。杨树全基因组测序的完成标志着林木基因组进入后基因组研究时代。克隆控制重要性状的主效基因是林木后基因组时代的主要研究内容。近年来, 在一些重要作物, 如水稻、蕃茄及玉米中, 先后成功克隆了多个控制重要农艺性状的主效基因, 分子育种在作物中已进入实用阶段。林木相对于这些重要作物而言, 分子遗传学的研究起步较晚, 同时, 由于林木自身的一些生物学特性, 在林木中精确定位与克隆未知基因一度被视为遗传学研究领域的难点。随着技术和研究手段的不断进步, 以及林木基因组资源的快速积累, 有望在这一领域取得突破, 为在林木中开展分子育种创造条件。文章综述了国际上林木基因组与功能基因克隆研究的现状与新发展, 并对后基因组时代的林木功能基因克隆研究的预期成果进行了展望, 以期为从事该领域研究的科研人员提供参考。     

哺乳动物系统发育基因组学研究进展

哺乳动物是一类最进化并在地球上占主导地位的动物类群,重建其系统发育关系一直是分子系统学的研究热点。随着越来越多物种全基因组测序的完成,在基因组水平上探讨该类动物的系统发育关系与进化成为研究的热点。本文从全基因组序列,稀有基因组变异及染色体涂染等几个方面简要介绍了当前系统发育基因组学在现生哺乳动物分子系统学中的应用,综合已有的研究归纳整理了胎盘亚纲的总目及目间的系统发育关系,给出了胎盘动物19 个目的系统发育树。本文还分析了哺乳动物系统发育基因组学目前所面临的主要问题及未来的发展前景。     

Climate Influences on the Radial Growth of Centrolobium microchaete,a Valuable Timber Species from the Tropical Dry Forests in Bolivia

In this study, we use tree‐ring records to determine the climate factors controlling the growth of Centrolobium microchaete, a high‐value timber species from the tropical dry Chiquitano forest in Bolivia. We present the first tree‐ring chronologies from C. microchaete for Concepción and Santa Mónica, Bolivia. Statistical analyses show that the chronologies are of good quality and have a significant common signal between trees. The growth of C. microchaete is strongly influenced by climatic conditions during late spring–early summer. Abundant precipitations concurrent with below‐average temperatures during this period of the year favor tree growth. Climate variations in late spring–early summer explain >40 percent of the total variance in C. microchaete tree growth during the interval 1943–2005. Minor differences in tree responses to climate recorded between the two stands may reflect differences in the extent of the dry season and in soil water capacity between sites. Although the chronologies cover the past 180 yr, adding samples from older individuals would permit the extension of these records further back in time. The strong climate dependency of tree growth suggests that predicted future climate changes in the region could have a significant influence on C. microchaete tree growth during the 21st century.     

Selection of Nest Trees by Cavity‐nesting Birds in the Neotropical Atlantic Forest

One of the five most important global biodiversity hotspots, the Neotropical Atlantic forest supports a diverse community of birds that nest in tree cavities. Cavity‐nesting birds may be particularly sensitive to forestry and agricultural practices that remove potential nest trees; however, there have been few efforts to determine what constitutes a potential nest tree in Neotropical forests. We aimed to determine the characteristics of trees and cavities used in nesting by excavators (species that excavate their own nest cavity) and secondary cavity‐nesters (species that rely on existing cavities), and to identify the characteristics of trees most likely to contain suitable cavities in the Atlantic forest of Argentina. We used univariate analyses and conditional logistic regression models to compare characteristics of nest trees paired with unused trees found over three breeding seasons (2006–2008). Excavators selected dead or unhealthy trees. Secondary cavity‐nesters primarily selected cavities that were deep and high on the tree, using live and dead cavity‐bearing trees in proportion to their availability. Nonexcavated cavities suitable for birds occurred primarily in live trees. They were most likely to develop in large‐diameter trees, especially grapia Apuleia leiocarpa and trees in co‐dominant or suppressed crown classes. To conserve cavity‐nesting birds of the Atlantic forest, we recommend a combination of policies, economic assistance, environmental education, and technical support for forest managers and small‐scale farmers, to maintain large healthy and unhealthy trees in commercial logging operations and on farms.     

Stress‐Driven Changes in the Strength of Facilitation on Tree Seedling Establishment in West African Woodlands

The strength of competitive and facilitative interactions in plant communities is expected to change along resource gradients. Contrasting theoretical models predict that with increasing abiotic stress, facilitative effects are higher, lower, or similar than those found under more productive conditions. While these predictions have been tested in stressful environments such as arid and alpine ecosystems, they have hardly been tested for more productive African woodlands. We experimentally assessed the strength of tree seedling facilitation by nurse trees in mesic and dry woodlands in Benin, West Africa. We planted seedlings of the drought‐sensitive Afzelia africana and the drought‐tolerant Khaya senegalensis under three microsite conditions (closed woodland, woodland gap, and open fields). Seedling survival was greater within woodlands compared with open fields in both the mesic and dry woodlands. The relative benefits in seedling survival were larger at the dry site, especially for the drought‐sensitive species. Nevertheless, plant interactions became neutral or negative during the dry season in the drier woodland, indicating that the net positive effects may be lost under very stressful abiotic conditions. We conclude that facilitation also occurs in the relatively more productive conditions of African woodlands. Our results underscore the role of environmental variation in space and time, and the stress tolerance of species, in explaining competitive and facilitative interactions within plant communities. Abstract in French is available at http://www.blackwell‐synergy.com/loi/btp .     

Prediction of the anomeric configuration, type of linkage, and residues in disaccharides from 1D C NMR data

A machine learning approach was explored for the prediction of the anomeric configuration, residues, and type of linkages of disaccharides using ¹³C NMR chemical shifts. For this study, 154 pyranosyl disaccharides were used that are dimers of the α or β anomers of d-glucose, d-galactose or d-mannose residues bonded through α or β glycosidic linkages of types 1→2, 1→3, 1→4, or 1→6, as well as methoxylated disaccharides. The ¹³C NMR chemical shifts of the training set were calculated using the casper (Computer Assisted SPectrum Evaluation of Regular polysaccharides) program, and chemical shifts of the test set were experimental values obtained from the literature. Experiments were performed for (1) classification of the anomeric configuration, (2) classification of the type of linkage, and (3) classification of the residues. Classification trees could correctly classify 67%, 74%, and 38% of the test set for the three tasks, respectively, on the basis of unassigned chemical shifts. The results for the same experiments using Random Forests were 93%, 90%, and 68%, respectively.     

Behavioral tests as indicator for pain and distress in a primate endometriosis model

Background As common marmosets (Callithrix jacchus) are frequently used experimental animals, sensitive test systems are needed to evaluate impairment and pain caused by procedures and diseases. Methods A diurnal profile of healthy animals was obtained by videotaping. Differences in social behavior and cognitive skills between marmosets with established endometriosis and healthy monkeys were investigated using the videotaping, the Wisconsin General Test Apparatus (WGTA), and a food tree. Results The marmosets showed a mostly trimodal course of activity. Social grooming and activity were significantly decreased in animals with endometriosis; furthermore, the diseased monkeys habituated significantly worse to the cognitive test settings. The food tree experiments offered no differences between diseased and control animals. Conclusion The videotaping and the WGTA are suitable methods to detect disease‐related impairments in common marmosets, which is essential for the refinement of experiments.     

Dung beetle assemblages on tropical land‐bridge islands: small island effect and vulnerable species

Aim Using dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae) in a tropical land‐bridge island system, we test for the small island effect (SIE) in the species–area relationship and evaluate its effects on species richness and community composition. We also examine the determinants of species richness across island size and investigate the traits of dung beetle species in relation to their local extinction vulnerability following forest fragmentation. Location Lake Kenyir, a hydroelectric reservoir in north‐eastern Peninsular Malaysia. Methods We sampled dung beetles using human dung baited pitfall traps on 24 land‐bridge islands and three mainland sites. We used regression tree analyses to test for the SIE, as well as species traits related to local rarity, as an indication of extinction vulnerability. We employed generalized linear models (GLMs) to examine determinants for species richness at different scales and compared the results with those from conventional linear and breakpoint regressions. Community analyses included non‐metric multidimensional scaling, partial Mantel tests, nestedness analysis and abundance spectra. Results Regression tree analysis revealed an area threshold at 35.8 ha indicating an SIE. Tree basal area was the most important predictor of species richness on small islands (<35.8 ha). Results from GLMs supported these findings, with isolation and edge index also being important for small islands. The SIE also manifested in patterns of dung beetle community composition where communities on small islands (<35.8 ha) departed from those on the mainland and larger islands, and were highly variable with no significant nestedness, probably as a result of unexpected species occurrences on several small islands. The communities exhibited a low degree of spatial autocorrelation, suggesting that dispersal limitation plays a part in structuring dung beetle assemblages. Species with lower baseline density and an inability to forage on the forest edge were found to be rarer among sites and hence more prone to local extinction. Main conclusions We highlight the stochastic nature of dung beetle community composition on small islands and argue that this results in reduced ecosystem functionality. A better understanding of the minimum fragment size required for retaining functional ecological communities will be important for effective conservation management and the maintenance of tropical forest ecosystem stability.