Phytoclasts in palynofacies definition: the example of Rhaetian sedimentary organic matter in SE France

The aim of this paper is to calibrate palynofacies with eight classes of phytoclasts using statistical methods in order to construct a reference. Seven categories of palynomorphs are compared to the phytoclast reference. Principal components analysis (PCA) were performed, firstly using separated phytoclast and palynomorph parameters and, secondly, the two grouped describers on samples from two Rhaetian sections that outcrop in SE France. Factor plots of phytoclast data show an arrangement that we assume to be relevant to a crescent buoyant phytoclast order previously described by literature. This arrangement is associated with palynomorph describers (abundance of spores and acritarchs Micrhystridium and pollen Ovalipollis). Some lithological observations are antinomic with an interpretation of these groupings in terms of depositional energy but are presumably coherent with the water depth. Testing all the parameters simultaneously, we define six types of palynofacies ordered on a hypothesized water depth gradient, sustained by an inferred “buoyant factorial plan”. A low water depth palynofacies is associated with lagoons, beaches and marine-shelves. The phytoclasts present are the most buoyant particles on the palynomaceral arrangement. Bays, lagoons, foreshores, beaches, restricted-marine and marine-shelves produce the highest water depth palynofacies. The phytoclasts present are the poorest buoyant particles on the palynomaceral arrangement. Although the exact nature of the relations between energy, water depth and phytoclasts are unknown, the definition of palynofacies by PCA is an objective method for investigating and correlating sedimentary sections.     

北京小龙门森林鸟类群落划分与生态分析

森林鸟类是森林陆栖脊椎动物中种类和数量最丰富的动物类群 ,它们对于促进森林天然更新、传播植物种子及花粉、控制森林害虫和害兽等方面都起着重要作用。关于小龙门林区鸟类群落结构的研究已有报道[1 ] ,但是对于小龙门林区鸟类群落的划分未见有专门报道 ,我们于 1 992年 1 0月～1 993年 2月 ,1 993年 4～ 1 2月 ,1 994年 2～ 8月对北京小龙门林区所有 8条自然沟和 1条公路进行了调查 ,目的在于了解小龙门林区不同林型、海拔等区域的鸟类种类组成和数量状况 ,探讨不同区域的鸟类群落的划分及其影响因素。1　研究地点及方法小龙门林区位于北…     

氨基酸的分子结构与遗传密码简并及二维集合分类

根据氨基酸遗传密码子的简并程度,可将64个遗传密码子分为高简并度类（3,4,6度简并组）和低简并度类（1,2度简并组）两大类。高简并度类有9个氨基酸,其分子量比较小,等电点的分布比较集中。低简并度类有11个氨基酸,其分子结构比较复杂,参考Taylor对氨基酸特性的分类图,本文提出以分子量（M）及等电点（P）作为氨基酸的化学特性坐标,作出其二维集合MP分类图,MP分类图可以反映出氨基酸的各种属性,如分子量的大小,简并度的高低,极性与非极性、带电荷或不带电荷,疏水性与亲水性,以及氨基酸残基的种类等。根据氨基酸的分类分析,可以认为：高简并度氨基酸多数是脂烃类和羟脂烃类的氨基酸,分子量比较小,分子结构比较简单,大部分为疏子性,主要组成跨膜结构或蛋白质的结构域,可能是出现较早的氨基酸;而低简并度的氨基酸,分子结构比较复杂,分子量比较大,多数是和蛋白质功能有密切联系的基团,可能是进化出现较晚的结构。     

DNA指纹图谱鉴别双歧杆菌的研究

采用RAPD技术选用10条引物对7种9株双歧杆菌基因组DNA进行PCR扩增,根据在优化条件下所得DNA指纹图谱分析了双歧杆菌菌株的遗传多样性,并构建了相似性指数矩阵和树状图.结果表明,不同序列的随机引物可扩增不同形式的RAPD图谱,但并非所有图谱都具有分类学意义,其中引物S256对双歧杆菌种及同种不同菌株均具有良好的区分能力,由该引物扩增的RAPD图谱计算出的相对性指数矩阵以及由此构建的聚类树状图均能正确地反映出双歧杆菌的系统发育关系,同时对RAPD图谱作为工业双歧杆菌分子标记的可能性进行了探讨.     

Effect of amiodarone (AMD) on the antioxidant enzymes,lipid peroxidation and mitochondrial metabolism

The effects of amiodarone (AMD) on lipid peroxidation of rat liver mitochondria, the formation of superoxide anions at the respiratory chain level, and the cytosolic and mitochondrial enzymatic protective mechanisms of oxidative stress were studied. An attempt to classify AMD according to its toxic ability to interfere with the integrated function of electron transport enzymes was also investigated. The results confirm the effects of AMD on complex I and permit the placing of this drug in class A of the classification of Knobeloch, together with rotenone, amytal and chaotropic agents. AMD has no effect on the activity of the enzymes superoxide dismutase, catalase, glutathione reductase and glutathione peroxidase, nor on glucose 6-phosphate dehydrogenase. AMD did not promote an increase in the formation of anion superoxide at the respiratory chain level. Pre-incubation with AMD (16·6 μM ) inhibited about 70 per cent of lipid peroxidation. The results suggest a protective effect of AMD against lipid peroxidation in mitochondrial membranes by iron-dependent systems. © 1997 John Wiley & Sons, Ltd.     

MIVQUE and REML Estimators of Variance Components under Proportionality Condition

In this study, a one-way random effect model with unequal cell variances is considered, and the Minimum Variance Quadratic Unbiased Estimator (MIVQUE) and Restricted Maximum Likelihood (REML) estimator of the variance components are studied. The algebraic inversion of the variance matrix of the observation vector is obtained to achieve some computational convenience. Using the proportionality condition described by Talukder (1992) that the cell sizes are proportional to the cell variances, MIVQUE and REML estimators are shown to be the same as the ANOVA estimators.     

Pfam: A comprehensive database of protein domain families based on seed alignments

Databases of multiple sequence alignments are a valuable aid to protein sequence classification and analysis. One of the main challenges when constructing such a database is to simultaneously satisfy the conflicting demands of completeness on the one hand and quality of alignment and domain definitions on the other. The latter properties are best dealt with by manual approaches, whereas completeness in practice is only amenable to automatic methods. Herein we present a database based on hidden Markov model profiles (HMMs), which combines high quality and completeness. Our database, Pfam, consists of parts A and B. Pfam-A is curated and contains well-characterized protein domain families with high quality alignments, which are maintained by using manually checked seed alignments and HMMs to find and align all members. Pfam-B contains sequence families that were generated automatically by applying the Domainer algorithm to cluster and align the remaining protein sequences after removal of Pfam-A domains. By using Pfam, a large number of previously unannotated proteins from the Caenorhabditis elegans genome project were classified. We have also identified many novel family memberships in known proteins, including new kazal, Fibronectin type III, and response regulator receiver domains. Pfam-A families have permanent accession numbers and form a library of HMMs available for searching and automatic annotation of new protein sequences. Proteins: 28:405–420, 1997. © 1997 Wiley-Liss, Inc.     

Development of incident severity classification for laboratory animals

An incident reporting system (IRS) prevents possible adverse events by collecting and analyzing incidents that occur. However, few studies are available regarding IRSs in the laboratory animal field. This study aimed to develop an incident severity classification for laboratory animals (ISCLA) to evaluate the usefulness of the IRS in laboratory animal facilities. Twenty-three incidents reported from March 2019 to February 2020 on our IRS were retrospectively reviewed. Three of the 23 incidents failed to obtain some experimental data. Two of these incidents were harmless to animals, but the other caused the animals moderate distress. In addition, two of the three incidents made animals unsuitable for experiments. Since the inconsistent impact of incidents on animals and experiments prevented the comparison of the severity of individual incidents, we developed the ISCLA. According to the ISCLA, the above three incidents were classified into Category 3b and 4a. The others were classified into Category 0 (n=5), 1 (n=6), 2 (n=3), and 3a (n=6) in ascending order of severity. No incident was classified into Category 4b and 5. Furthermore, incidents occurring in the animal housing area were more severe than those occurring in the supporting area (P=0.002). This study showed that incident occurrences had characteristics that were not visible from individual incidents alone. Moreover, the ISCLA was considered useful when conducting the IRS and taking improvement measures in laboratory animal facilities.     

纳米水解酶的研究进展

水解酶由至少200种单独的蛋白质组成,可催化一系列独特化学键的水解.但是天然酶的固有缺点,如易变性、成本高、制备费力和回收困难,极大地限制了它们的实际应用.为了克服这些缺点,研究人员长期以来致力于探索人工水解酶模拟物.自从2007年发现Fe3O4纳米颗粒可以作为过氧化物酶模拟物,关于纳米酶的研究不断涌现.与天然酶相比,...