Community characteristics of main vegetation types in the ecological “green-core” area of Changzhutan urban cluster

长株潭城市群生态绿心地区地处南方红壤丘陵区的中心地带, 植被区划上属中亚热带常绿阔叶林北部植被亚地带。该区植被以次生林为主, 植被类型复杂多样, 在南方红壤丘陵区现状植被中具有典型代表性, 可为区域植被演替动态和植被恢复研究提供良好的平台。该研究采用统一、规范的方法设置了50个样方, 对区内主要植被类型的物种组成、数量特征、生境信息等进行调查。计算乔木层、灌木层和草本层物种重要值, 运用《中国植被志》编研规范进行植被类型划分和命名, 描述群落物种组成和特征, 并提供10个植被型、22个群系、33个群丛共50个样方的原始数据, 包括森林样方43个, 灌丛样方5个, 草地样方1个, 沼泽样方1个。     

生长型分类方案不同导致森林生态系统植物功能性状的统计偏差

将植物划分为不同的生长型来统计植物功能性状特征,是当前植物性状研究中常用的方法;但生长型分类方案的不同很可能造成植物功能性状统计分析的偏差,对此偏差的评估却尚未见报道。根据植物志描述及野外调查实际情况,将生长型划分为3种不同的分类方案：分类1：根据植物志信息划分为传统意义的乔木和灌木;分类2：根据树高和胸径划分乔木、小乔木和灌木;分类3：仅根据树高划分乔木层与灌木层的乔木和灌木。以东部亚热带常绿阔叶林区域的浙江金华北山35种优势阔叶木本植物的枝叶性状为研究对象,比较不同生长型分类对植物枝叶性状统计数据的影响。结果表明：（1）与传统的分类1相比,分类2对乔木植物枝叶性状影响的显著程度要高于分类3,而对灌木植物枝叶性状的影响程度低于分类3;但不同生长型分类方案中乔木和灌木的枝叶性状总体差异不显著。而与分类2小乔木相比,分类1以及分类2内部的乔木和灌木生长型的性状与分类2小乔木差异非常明显;（2）将不同生长型植物再划分为不同生活型后,不同生长型分类方案对性状统计的影响增大。无论是常绿还是落叶生活型的小乔木,其与不同生活型乔木和灌木的性状差异仍然显著。可见,不同的生长型分类方案可造成植物功能性状统计的差异;把小乔木植物这一功能类群划分出来,能更好地反映森林生态系统性状特征的差异性。     

SeSaMe:Metagenome Sequence Classification of Arbuscular Mycorrhizal Fungi-associated Microorganisms

Arbuscular mycorrhizal fungi (AMF) are plant root symbionts that play key roles in plant growth and soil fertility. They are obligate biotrophic fungi that form coenocytic multinucleated hyphae and spores. Numerous studies have shown that diverse microorganisms live on the surface of and inside their mycelia, resulting in a metagenome when whole-genome sequencing (WGS) data are obtained from sequencing AMF cultivated in vivo. The metagenome contains not only the AMF sequences, but also those from associated microorganisms. In this study, we introduce a novel bioinformatics program, Spore-associated Symbiotic Microbes (SeSaMe), designed for taxonomic classification of short sequences obtained by next-generation DNA sequencing. A genus-specific usage bias database was created based on amino acid usage and codon usage of a three consecutive codon DNA 9-mer encoding an amino acid trimer in a protein secondary structure. The program distinguishes between coding sequence (CDS) and non-CDS, and classifies a query sequence into a genus group out of 54 genera used as reference. The mean percentages of correct predictions of the CDS and the non-CDS test sets at the genus level were 71% and 50% for bacteria, 68% and 73% for fungi (excluding AMF), and 49% and 72% for AMF (Rhizophagus irregularis), respectively. SeSaMe provides not only a means for estimating taxonomic diversity and abundance but also the gene reservoir of the reference taxonomic groups associated with AMF. Therefore, it enables users to study the symbiotic roles of associated microorganisms. It can also be applicable to other microorganisms as well as soil metagenomes. SeSaMe is freely available at www.fungalsesame.org.     

我国铁线莲属植物研究进展

摘要:系统介绍了国内铁线莲属植物在系统分类、种质资源、发育生物学、细胞染色体学、植物生理学、育种学、引种驯化及繁殖、栽培学方面的研究情况,提出在铁线莲属植物资源收集与保存、新品种培育方面进一步研究的重点。 关键词：铁线莲属;研究进展     

Arguments against the prostatic origin of the R-3327 Dunning H tumor

The Dunning tumor, originally described as a carcinoma of the rat dorsal prostate, has for long been used as an experimental model of prostatic cancer. We have recently presented a number of morphological findings that are incompatible with the prostatic origin of the H-subline of the Dunning tumor. In this paper, biochemical and immunohistochemical markers of rat prostate and mammary gland are studied in the R-3327 Dunning H tumor. Pieces of the H tumor were inoculated in male or lactating female rats. The electrophoretic protein pattern of Dunning tumor extracts was more similar to that of the mammary gland than the dorsolateral prostate. Proteins selectively appearing after metabolic labeling in Dunning tumors grown in lactating rats corresponded to labeled proteins in mammary glands from the same animals. Secretory proteins typical of the lateral prostate (SVS II) and dorsal prostate (transglutaminase) could not be detected immunohistochemically in the Dunning tumor. Western blot studies of tumor extracts and slot blot analysis of RNA preparations from the tumor confirmed the absence of SVS II and prostate specific transglutaminase from the Dunning tumor. On the other hand, the presence of mammary gland proteins such as milk fat globule membrane proteins, lactoperoxidase and lactalbumin were detected in the Dunning tumor by immunohistochemistry and Western blotting, but were absent from the dorsolateral prostate. Transferrin-mRNA, expressed in the male urogenital tract and also in the liver and other tissues, was detected in the mammary gland and Dunning tumor, but not in the dorsolateral prostate. The absence of mammary gland secretory beta-casein in the Dunning tumor was related to the elevated Ha-ras oncogene expression in the tumor, previously reported to suppress casein expression. The findings clearly demonstrate that the prostate cannot be the origin of the Dunning tumor, presently being used in prostatic cancer research. The designation prostatic adenocarcinoma for this tumor is therefore invalid. Furthermore, the data support our view that mammary gland might be the origin of the Dunning tumor, although the derivation from the bulbourethral or the parotid glands cannot strictly be excluded.     

Hyperspectral imaging of mucosal surfaces in patients

The aim of this study was to proof applicability of hyperspectral imaging for the analysis and classification of human mucosal surfaces in vivo. The larynx as a prototypical anatomically well‐defined surgical test area was analyzed by microlaryngoscopy with a polychromatic lightsource and a synchronous triggered monochromatic CCD‐camera. Image stacks (5 benign, 7 malignant tumors) were analyzed by established software (principal component analysis PCA, hyperspectral classification, spectral profiles). Hyperspectral image datacubes were analyzed and classified by conventional software. In PCA, images at 590–680 nm loaded most onto the first PC which typically contained 95% of the total information. Hyperspectral classification clustered the data highlighting altered mucosa. The spectral profiles clearly differed between the different groups. Hyperspectral imaging can be applied to mucosal surfaces. This approach opens the way to analyze spectral characteristics of histologically different lesions in order to build up a spectral library and to allow non‐touch optical biopsy. (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

人体外形的相似性

本文首先提出了人体相似性的概念和定义, 并进行了数学论证, 导出了标准人体的数学表达方法,然后, 根据90名志愿者的样本具体计算说明了标准人体尺寸的适用性。本文提出的标准人体尺寸处理方法, 可供人种和体型分类、人体模型与服装设计时确定人体各部尺寸, 为利用人体其他节段估测人全身尺寸的可能性提供参考。最后指出, 表示人体尺寸间相互关系的人体常数是存在的; 在设计人体模型时, 不管模型的比例如何, 所设计模型的人体常数需保持与所代表的人群样本的人体常数一致。     

Distribution of chironomids (Diptera) in low arctic West Greenland lakes: trophic conditions, temperature and environmental reconstruction

1. Surface sediment samples of subfossil chironomid head capsules from 47 lakes in southern West Greenland were analysed using multivariate numerical methods in order to explore the relationship between chironomid assemblages and selected environmental variables. The study lakes are located along a climate gradient ranging from coastal maritime conditions near the Davis Strait to a continental climate near the margin of the Greenland ice sheet. 2. High‐resolution surface water temperatures were measured through the summer season using automatic data loggers in 21 of the study lakes. The mean July surface water temperature (1999) ranged from 7.3 to 16.5 °C in the data set. 3. In all lakes, a total of 24 chironomid taxa were recorded; Micropsectra, Psectrocladius, Chironomus and Procladius were the dominant genera. There was a strong correlation between the trophic variables [total nitrogen and total phosphorus (TN, TP)] and temperature, and in redundancy analysis (RDA) the three variables explained almost equal significant amounts of variation in the chironomid data (19.8–22.3%). However, temperature lost significant explanatory power when the effect of TN was partialled out in RDA. 4. The lakes were classified using two‐way indicator species analysis (TWINSPAN ) into eight groups defined by temperature, trophic variables, salinity (conductivity) and lake‐morphometric data. Fourteen chironomid taxa showed significant differences in percentage abundances among groups, with Heterotrissocladius, Micropsectra, Ablabesmyia and Chironomus as the most robust group‐indicator taxa. Forward selection of taxa in multiple discriminant analysis was used to fit chironomid assemblages into lake groups. Using only eight taxa, 95% of lakes were correctly classified at a second TWINSPAN division level (four groups) and 85% of lakes at a third division level (eight groups). 5. This study showed that there is considerable potential in using subfossil chironomid head capsules as paleoenvironmental indicators in both short‐ and long‐term (down‐core) studies of lake ontogeny and palaeoclimate conditions in West Greenland. However, because of the strong correlation between temperature and trophic variables, a quantitative reconstruction of lake‐ and habitat‐type is recommended, in combination with direct reconstruction of single variables such as temperature.     

Application of remote sensing to site characterisation and environmental change analysis of North African coastal lagoons

This article describes the use of satellite imagery for identifying key environmental characteristics within three North African coastal lagoons (Merja Zerga, Morocco; Ghar El Melh, Tunisia and Lake Manzala, Egypt) and for detecting the major environmental changes within these environments. A combination of Landsat MSS, Landsat TM, Landsat ETM+ and ASTER imagery was acquired for the three sites for a period covering the last three decades (1972–2004). Following geometric correction and enhancement, the interpretation of the most recent image acquired for each of the three lagoons provides important insights into their current conditions. For Merja Zerga, these include the distribution of the largest channels which drain extensive inter-tidal mudflats and the two major depositional features associated with sources of freshwater. The distribution of marginal aquatic vegetation is highlighted as is the intensive use of the surrounding landscape for agriculture. Intensive agriculture around Ghar El Melh is also indicated. The influence of the Mejerda River, which was diverted away from the lagoon over 100 years ago, is shown to persist as a residual area of deltaic deposits in shallow water that has been eroded over time. Coastal processes including the direction of the alongshore sediment transport and the influence of engineering work associated with port construction can also be recognised. Within Lake Manzala, vegetated islands divide the lake into a series of sub-basins which can be clearly distinguished. The large influence of human activities within this lake can be identified and include reclamation for agriculture and the conversion of parts of the lake bed for fish farms. The historical images available for the three lagoons provide important insights into decadal scale changes, which have been greatest at Lake Manzala. Since the early 1970s large parts of the lake, in particular in the southwest where the shoreline has migrated northwards, have been reclaimed. Major engineering works, such as the El Salam Canal and road embankments, are shown to have resulted in significant lake change. The distribution of emergent vegetation within the lake has also changed. Classification of images for this lake into open water, vegetation and land enables the quantification of these changes. Between 1973 and 2003, the lake declined in area by approximately 50%. Changes at Merja Zerga over the last three decades include reconfiguration of the marine outlet and the expansion of the internal delta at the end of the Nador Canal. The images of this site clearly demonstrate the intensification of agriculture around the lagoon. The most marked changes evident within the images of Ghar El Melh concern the sand bars that separate the lagoon from the sea. Geomorphological processes operating within the coastal zone have resulted in the straightening of the bars with central sections migrating out towards the sea. Remote sensing is established as a promising application for detecting the quantitative surface cover changes in coastal lagoons and their near landscapes. Guest editors: J. R. Thompson & R. J. Flower Hydro-ecological Monitoring and Modelling of North African Coastal Lagoons