Chromosomal studies in four species of genus Chaunus (Bufonidae, Anura): localization of telomeric and ribosomal sequences after fluorescence in situ hybridization (FISH)

Fluorescence in situ hybridization (FISH) using telomeric and ribosomal sequences was performed in four species of toad genus Chaunus: C. ictericus, C. jimi, C. rubescens and C. schneideri. Analyses based on conventional, C-banding and Ag-NOR staining were also carried out. The four species present a 2n = 22 karyotype, composed by metacentric and submetacentric chromosomes, which were indistinguishable either after conventional staining or banding techniques. Constitutive heterochromatin was predominantly located at pericentromeric regions, and telomeric sequences (TTAGGG)(n) were restricted to the end of all chromosomes. Silver staining revealed Ag-NORs located at the short arm of pair 7, and heteromorphism in size of NOR signals was also observed. By contrast, FISH with ribosomal probes clearly demonstrated absence of any heteromorphism in size of rDNA sequences, suggesting that the difference observed after Ag-staining should be attributed to differences in chromosomal condensation and/or gene activity rather than to the number of ribosomal cistrons.     

A novel immobilization strategy using oligonucleotide as linker for small molecule microarrays construction

A novel immobilization method based on oligonucleotide as linker has been developed for small molecule microarrays (SMMs) construction. The oligonucleotide tail was employed as a linker in solid-phase synthesis. Small molecules could be easily conjugated at the 5′ end of the oligonucleotide, previously modified with a functional group. Being a reactive species, the oligonucleotide was activated by UV irradiation, for the attachment of the conjugate to the slide surface. The method was successfully applied to structurally distinct small molecules, including biotin, antibiotic and drug. This immobilization strategy showed high efficiency, 1.1 fmol of small molecules in the spotting solution per spot gave a detectable signal (mean S/N = 10.9). The results suggest that it is very promising for exploring interaction between small molecules and proteins, and high throughput detecting the chemical compounds.     

酵母基因上游区与内含子可能的短程和长程转录协同增效作用

根据实验观察到的DNA成环和弯折机制,以140bp为分界点,探讨高频转录基因上游区与内含子之间可能存在的短程和长程转录协同增效作用（synergy）。用与随机序列做对比的方法,抽提出最近距离在140bp以下的寡核苷酸对,以及最近距离在140bp以上的寡核苷酸对。仔细分析两种距离下的可能的协同寡核苷酸对的位置特征和碱基组分,发现短程协同作用的寡核苷酸对的平均最近距离都在110bp以下,位于上游区的CCAA是一个很明显的特征;而长程协同作用的寡核苷酸对的平均最近距离集中在250-400bp,并且在多数寡核苷酸对中,位于上游区的寡核苷酸是GC丰富的正调控元件。     

核酸探针中放射性同位素的快速检测

利用尼龙膜作为介质,以0．4mol／L的NaOH为层析液,进行膜上层析,分离经放射性同位素标记的核酸探针和未掺入的放射性游离单核苷酸,再经放射性强度测定即可计算出标记后的核酸探针的放射性比活。方法简单快捷,产生的放射性废物少,完全可以替代经典的三氯乙酸沉淀法及滤膜吸附法。     

Alteration of membrane lipid biophysical properties and resistance of human lung adenocarcinoma A_(549) cells to cisplatin

Alterations of membrane lipid biophysical properties of sensitive A549 and resistant A549/DDP cells to the Cis-dichlorodiammine platinum (Cisplatin) were performed by measurements of fluorescence and flow cytometry approaches using fluorescence dyes of DPH, N-AS and Mero-cyanine 540 (MC 540) respectively. Fatty acids of membrane lipid of the two cell lines were analyzed by gas chromatography. The results indicated clearly that fluorescence polarization (P) of the DPH probe is 0.169 for the sensitive A549 cell and 0.194 for the resistant A549/DDP cells. Statistical analysis showed significant difference between the two cell lines. The polarizations of 2-AS and 7-AS which reflect the fluidity of surface and middle of lipid bilayer are 0.134 and 0.144 for the sensitive A549 cells as well as 0.171 and 0.178 for the resistant A549/DDP cells respectively, but there is no significant difference of the polarization of 12-AS between the two cell lines. This shows that alterations of the membrane fluidity of both     

Calcium and pH patterning at the apical meristem are specifically altered by photoperiodic flower induction in Chenopodium spp.

The apical meristem of the short‐day plant Chenopodium rubrum responds to photoperiodic flower induction with specific changes of pH and Ca²⁺ patterning immediately after the inductive dark span. The red–far‐red reversibility of the pH and Ca²⁺ patterning in response to night break treatments was measured in order to distinguish between the effect of the prolonged dark span per se and the specific effect of photoperiodic flower induction. In addition, the pH and Ca²⁺ patterning in C. rubrum was compared with the long‐day plant Chenopodium murale. The pH was visualized using the fluorescent probe carboxy SNARF‐1. Calcium ion concentrations were studied using a combination of Ca²⁺‐probes Fluo‐3 and Fura Red. It was observed that the specific changes in pH and Ca²⁺ patterning at the apical meristem of C. rubrum were abolished by the red‐light break. This effect was fully reversed with a subsequent single far‐red treatment. These observations infer the influence of phytochrome on both pH and Ca²⁺ patterning. Changes in pH and Ca²⁺ patterning upon flower induction were observed in both long‐day and short‐day plants. These results support the hypothesis that changes of pH and [Ca²⁺] in cells of the apical meristem are part of the pathway in signal transduction triggering flower initiation.     

Close sequence identity between ribosomal DNA episomes of the non-pathogenicEntamoeba dispar and pathogenicEntamoeba histolytica

Entamoeba dispar andEntamoeba histolytica are now recognized as two distinct species-the former being nonpathogenic to humans. We had earlier studied the organization of ribosomal RNA genes inE. histolytica. Here we report the analysis of ribosomal RNA genes inE. dispar. The rRNA genes ofE. dispar, like their counterpart inE. histolytica are located on a circular rDNA molecule. From restriction map analysis, the size ofE. dispar rDNA circle was estimated to be 24·4 kb. The size was also confirmed by linearizing the circle withBsaHI, and by limited DNAseI digestion. The restriction map of theE. dispar rDNA circle showed close similarity to EhR1, the rDNA circle ofE. histolytica strain HM-1:IMSS which has two rDNA units per circle. The various families of short tandem repeats found in the upstream and downstream intergenic spacers (IGS) of EhR1 were also present inE. dispar. Partial sequencing of the cloned fragments ofE. dispar rDNA and comparison with EhR1 revealed only 2·6% to 3·8% sequence divergence in the IGS. The region Tr and the adjoiningPvuI repeats in the IGS of EhR1, which are missing in thoseE. histolytica strains that have one rDNA unit per circle, were present in theE. dispar rDNA circle. Such close similarity in the overall organization and sequence of the IGS of rDNAs of two different species is uncommon. In fact the spacer sequences were only slightly more divergent than the 18S rRNA gene sequence which differs by 1·6% in the two species. The most divergent sequence betweenE. histolytica andE. dispar was the internal transcribed spacer, ITS2. Therefore, it was concluded that probes derived from the ITS1 and ITS 2 sequences would be more reliable and reproducible than probes from the IGS regions used earlier for identifying these species.