Hydrogen production by the newly isolated Clostridium beijerinckii RZF-1108

A fermentative hydrogen-producing strain, RZF-1108, was isolated from a biohydrogen reactor, and identified as Clostridium beijerinckii on the basis of the 16S rRNA gene analysis and physiobiochemical characteristics. The effects of culture conditions on hydrogen production by C. beijerinckii RZF-1108 were investigated in batch cultures. The hydrogen production and growth of strain RZF-1108 were highly dependent on temperature, initial pH and substrate concentration. Yeast extract was a favorable nitrogen source for hydrogen production and growth of RZF-1108. Hydrogen production corresponded to cell biomass yield in different culture conditions. The maximum hydrogen evolution, yield and production rate of 2209 ml H₂/l medium, 1.97 mol H₂/mol glucose and 104.20 ml H₂/g CDW h⁻¹ were obtained at 9 g/l of glucose, initial pH of 7.0, inoculum volume of 8% and temperature of 35 °C, respectively. These results demonstrate that C. beijerinckii can efficiently produce H₂, and is another model microorganism for biohydrogen investigations.     

Genetic characterisation of Toxoplasma gondii in wildlife from North America revealed widespread and high prevalence of the fourth clonal type

Little is known of the genetic diversity of Toxoplasma gondii circulating in wildlife. In the present study wild animals, from the USA were examined for T. gondii infection. Tissues of naturally exposed animals were bioassayed in mice for isolation of viable parasites. Viable T. gondii was isolated from 31 animals including, to our knowledge for the first time, from a bald eagle (Haliaeetus leucocephalus), five gray wolves (Canis lupus), a woodrat (Neotoma micropus), and five Arctic foxes (Alopex lagopus). Additionally, 66 T. gondii isolates obtained previously, but not genetically characterised, were revived in mice. Toxoplasma gondii DNA isolated from these 97 samples (31 + 66) was characterised using 11 PCR-restriction fragment length polymorphism (RFLP) markers (SAG1, 5′- and 3′-SAG2, alt.SAG2, SAG3, BTUB, GRA6, c22–8, c29–2, L358, PK1 and Apico). A total of 95 isolates were successfully genotyped. In addition to clonal Types II, and III, 12 different genotypes were found. These genotype data were combined with 74 T. gondii isolates previously characterised from wildlife from North America and a composite data set of 169 isolates comprised 22 genotypes, including clonal Types II, III and 20 atypical genotypes. Phylogenetic network analysis showed limited diversity with dominance of a recently designated fourth clonal type (Type 12) in North America, followed by the Type II and III lineages. These three major lineages together accounted for 85% of strains in North America. The Type 12 lineage includes previously identified Type A and X strains from sea otters. This study revealed that the Type 12 lineage accounts for 46.7% (79/169) of isolates and is dominant in wildlife of North America. No clonal Type I strain was identified among these wildlife isolates. These results suggest that T. gondii strains in wildlife from North America have limited diversity, with the occurrence of only a few major clonal types.     

15N stable isotope labelling of slugs (Gastropoda: Pulmonata)

Stable isotope tracers are a promising tool for investigating the ecology of terrestrial slugs, including predator‐prey relationships, migration behaviour, nutrient turnover and dietary routing. The objective of the present feasibility study was to label two economically important slug groups, Deroceras reticulatum and keeled slugs (families Limacidae and Milacidae, respectively), with the stable isotope ¹⁵N under controlled laboratory conditions. Significant isotopic enrichment in slug tissue was detected after 4 days and persisted for at least 10 days after slugs had been fed on ¹⁵N enriched food for a period of 15 days. The time course of ¹⁵N uptake into slug tissues and its relation to food consumption were well described mathematically. Estimated mean ¹⁵N assimilation efficiencies from labelled maize mixed with unlabelled wheat bran were 30% and 38%, respectively, for the species groups studied. These findings suggest that slugs can be readily and efficiently labelled and that it is feasible to devise protocols for producing large numbers of isotopically labelled slugs for use in ecological studies. A simple method is described for the collection and analysis of cutaneous mucus from individual slugs which can be used to test uniformity of isotopic labelling.     

Scientific and practical applications of molecular colonies

The review briefs the history of the invention of the molecular colony techique, also known as a polony technology; applications of this method to studies of the reactions between single RNA molecules, ultrasensitive diagnosis, gene cloning, and in vitro screening, as well as the concepts of the origin of life that regard molecular colonies as a prototype of living organisms.     

On the role of cross-immunity and vaccines on the survival of less fit flu-strains

A pathogen's route to survival involves various mechanisms including its ability to invade (host's susceptibility) and its reproductive success within an invaded host ("infectiousness"). The immunological history of an individual often plays an important role in reducing host susceptibility or it helps the host mount a faster immunological response de facto reducing infectiousness. The cross-immunity generated by prior infections to influenza A strains from the same subtype provide a significant example. The results of this paper are based on the analytical study of a two-strain epidemic model that incorporates host isolation (during primary infection) and cross-immunity to study the role of invasion mediated cross-immunity in a population where a precursor related strain (within the same subtype, i.e. H3N2, H1N1) has already become established. An uncertainty and sensitivity analysis is carried out on the ability of the invading strain to survive for given cross-immunity levels. Our findings indicate that it is possible to support coexistence even in the case when invading strains are "unfit", that is, when the basic reproduction number of the invading strain is less than one. However, such scenarios are possible only in the presence of isolation. That is, appropriate increments in isolation rates and weak cross-immunity can facilitate the survival of less fit strains. The development of "flu" vaccines that minimally enhance herd cross-immunity levels may, by increasing genotype diversity, help facilitate the generation and survival of novel strains.     

鸡腿菇子实体多糖分离纯化工艺及结构研究

以多糖得率为指标,用正交试验对鸡腿菇子实体多糖的提取纯化工艺进行优化。用离子色谱和凝胶渗透色谱对粗多糖进行分离纯化,利用化学和光谱学方法对均一多糖CC30w-1进行结构分析。结果表明鸡腿菇子实体多糖最佳提取工艺为:提取次数为3次,提取时间为1.5h,提取温度为95℃,料液比为1∶12;最佳脱蛋白条件:样品-氯仿 正丁醇为3∶1(V/V),氯仿-正丁醇为3∶1(V/V),反应时间为20min,脱蛋白次数为7;结构分析的结果表明:CC30w-1分子量为1.94×104Da,糖组成为Fuc∶Gal=1∶4.02;岩藻糖以端基方式连接,半乳糖主要以1,6-和1,2,6-两种方式连接,3个主要的连接方式的摩尔比为1.15∶2.88∶1;主要由(1,6)-α-D-Galp糖残基构成主链,在O-2位被α-Fucp糖残基取代的5个单糖残基组成的结构重复单元。     

Exploring the conformational space of protein loops using a mean field technique with MOLS sampling

We have recently developed a computational technique that uses mutually orthogonal Latin square sampling to explore the conformational space of oligopeptides in an exhaustive manner. In this article, we report its use to analyze the conformational spaces of 120 protein loop sequences in proteins, culled from the PDB, having the length ranging from 5 to 10 residues. The force field used did not have any information regarding the sequences or structures that flanked the loop. The results of the analyses show that the native structure of the loop, as found in the PDB falls at one of the low energy points in the conformational landscape of the sequences. Thus, a large portion of the structural determinants of the loop may be considered intrinsic to the sequence, regardless of either adjacent sequences or structures, or the interactions that the atoms of the loop make with other residues in the protein or in neighboring proteins.     

太湖地区黄泥土壤水稻氮素利用与经济生态适宜施氮量

通过田间试验对不同施肥水平下太湖地区黄泥土壤水稻的氮肥吸收规律和氮肥利用效率进行了研究,并应用15N微区试验测定不同氮肥水平下氮肥损失数量。在此研究数据基础上,引入数学的微积分原理和环境经济学的Coase原理,对该地区水稻田氮肥施用的经济效益和环境效益进行评价,求得219~255 kg hm^-2为太湖地区黄泥土上目前生产条件下,兼顾生产、生态和经济三效益比较合理的水稻施肥量,相应的经济、生态适宜产量为8601～8662 kg hm^-2。