基于12S和16S rRNA序列的湍蛙属部分物种的系统发育关系

测定了湍蛙属 6个种共 10个种群 ,以及 4个外群种的线粒体 12S和 16SrRNA基因片段 ,比对后有94 0bp序列 ,发现 35 2个变异位点、 186个简约性位点。运用NJ法、MP法、ML法构建了系统关系树 ,各系统树一致表明内群为一单系群 ,分为两组 :第一组中 ,四川湍蛙两种群先聚合 ,再和棕点湍蛙聚为一支 ;第二组中 ,香港湍蛙和戴云湍蛙聚为一支 ,而香港大屿山离岛湍蛙种群首先与华南湍蛙相聚 ,再与武夷湍蛙构成姐妹支。研究结果表明 :香港地区增加 1种湍蛙分布 ;戴云湍蛙是一有效种 ;四川湍蛙的石棉和洪雅种群间遗传差异达到或超过其他种间的分歧水平。     

Experimentally derived estimates of growth by juvenile Tachypleus tridentatus and Carcinoscorpius rotundicauda (Xiphosura) from nursery beaches in Hong Kong

Juvenile Tachypleus tridentatus and Carcinoscorpius rotundicauda with prosomal widths of between 17.1 and 91.1 mm were obtained from their nursery beaches in Hong Kong. They were kept in the laboratory and fed a mixture of squid, prawn and fish. Prosomal width and wet weight were measured weekly to obtain growth data. Over half of the individuals molted during a five and a half month captivity period. After every ecdysis, prosomal width and wet weight of T. tridentatus grew by averages of 24.2% and 71.5% over pre-molt measurements, respectively. Similar values were obtained for C. rotundicauda, i.e. 24.0% and 77.3%, respectively. Three T. tridentatus with prosomal widths of between 26.5 and 35.0 mm molted twice between 89 and 149 days, leading to an average growth rate of 0.1 mm·day⁻¹ and 0.04 g·day⁻¹ in terms of prosomal width and wet weight, respectively. A positive growth allometry (b coefficient=2.97) was identified, indicating that weight gain for T. tridentatus, and possibly C. rotundicauda, was faster than prosomal width growth after each ecdysis. The effect of temperature on growth was also determined by comparing the percentages of T. tridentatus which molted at ∼28 °C and ∼18 °C. Fifty percent of individuals molted at the former, but only 10% at the latter. This study indicates that Hong Kong horseshoe crabs take a shorter time to reach sexual maturity, as compared with conspecifics in Japan, because they can molt more frequently at higher sediment/water temperatures (∼28 °C) if food is available.     

Substrate Availability May Be More Important than Aquatic Insect Abundance in the Distribution of Riparian Orb-web Spiders in the Tropics

Spiders that are abundant along streams may depend on energy subsidies across land–water ecotones, but the effects of season and habitat structure on this trophic linkage remain poorly understood in the tropics. We carried out surveys and a manipulative experiment to investigate the effects of season and substrate availability on the distribution of riparian orb-web spiders in Hong Kong, southern China. In the surveys, spider abundance, prey, substrate use, and web orientation were recorded. The experiment involved installation of in-stream artificial substrates (ropes and bamboo poles) to increase substrate availability for web attachment. We found no seasonal difference in web abundance, but seasonal differences were observed for the prey on webs: aquatic insects (mostly Ephemeroptera and chironomid midges) contributed 69 percent of total prey collected during the wet season, but only 38 percent during the dry season. Most webs (50–80%) were < 0.5 m above the water and 45–51 percent of them tended to be orientated horizontally to the water surface and supported by overhanging vegetation and boulders. The addition of artificial substrates resulted in a 23–34 percent increase in the number of webs at the four treatment sites compared to controls, indicating that availability of web-building substrates is a critical determinant of the spider distribution. Our results suggest that riparian zones are potential 'hotspots' of food availability for spiders, and that the aquatic insect subsidy allows this habitat to support increased densities of spiders when the constraint of substrate availability is relaxed.     

Clarithromycin–Amoxycillin‐Containing Triple Therapy: A Valid Empirical First‐Line Treatment for Helicobacter pylori Eradication in Hong Kong?

Background: Recent studies have suggested the eradication rate for Helicobacter pylori infection with standard amoxycillin–clarithromycin‐containing triple therapy as first‐line treatment have fallen below 80%. Levofloxacin‐containing triple therapy was proposed as an alternative. The aim of this study is to compare the efficacy and tolerability of the standard 7‐day clarithromycin‐containing triple therapy against the 7‐day levofloxacin‐containing triple therapy, and to assess whether the classical triple therapy is still valid as empirical first‐line treatment for H. pylori infection in Hong Kong. Methods: Three hundred consecutive H. pylori‐positive patients were randomized to receive either 1 week of EAL (esomeprazole 20 mg b.d., amoxycillin 1 g b.d., and levofloxacin 500 mg daily) or EAC (esomeprazole 20 mg b.d., amoxycillin 1 g b.d., and clarithromycin 500 mg b.d.). H. pylori status was rechecked by ¹³C‐urea breath test 6 weeks after treatment. Patients who failed either of the first‐line eradication therapy were invited to undergo H. pylori susceptibility testing. Results: H. pylori eradication was achieved in 128 of 150 (85.3%) patients in EAL and 139 of 150 (92.7%) patients in EAC groups, respectively (p = .043), for both intention‐to‐treat and per‐protocol analysis. More patients in the clarithromycin‐ than the levofloxacin‐containing therapy group developed side effects from the medication (21.3% vs 13.3%, p = .060). Nine patients (six from the EAL group and three from the EAC group) who failed their corresponding eradication therapy returned for susceptibility testing. All nine isolates were highly resistant to levofloxacin (minimum inhibitory concentration or MIC > 32 μg/mL), whereas only two of the six isolates from the EAL group were resistant to clarithromycin (MIC > 0.5 μg/mL). Conclusions: The standard 7‐day clarithromycin‐containing triple therapy is still valid as the most effective empirical first‐line eradication therapy for H. pylori infection in Hong Kong, as prevalence of primary resistance of H. pylori to amoxycillin and clarithromycin remains low. Patients who failed their empirical first‐line eradication therapy should undergo H. pylori susceptibility testing to guide further treatment.     

Isolation and characterization of microsatellite markers from the limpet Cellana grata

This note describes the development of nine polymorphic microsatellite loci in the limpet Cellana grata to investigate population structure and cohort variation in this species. The number of alleles ranged from seven to 22 and observed heterozygosity ranged from 0.62 to 0.95. Deviation from the Hardy-Weinberg equilibrium was detected in two loci, both as a result of heterozygote deficiency. Null alleles were detected in one of these loci. These genetic markers will be used to investigate the genetic structure of C. grata populations, as well as variation among cohorts of this common intertidal species.     

Plant Biodiversity in China: Richly Varied, Endangered, and in Need of Conservation

China is among the world's richest countries in terms of plant biodiversity. Besides the abundant flora, containing some 33,000 vascular plants (30,000 angiosperms, 250 gymnosperms, and 2600 pteridophytes), there is extraordinary ecosystem diversity, as well as a large pool of both wild and cultivated germplasms. China is also considered one of the main centers of origin and diversification for seed plants on Earth, and is especially profuse in phylogenetically primitive taxa and/or paleoendemics due to the refuge role glaciation played during the Quaternary period. The collision with the Indian subcontinent significantly enriched Chinese flora and led to the formation of many neoendemisms. However, flora distribution remains uneven, and some local floristic hotspots are found across China, such as Yunnan, Sichuan and Taiwan. Unfortunately, this biodiversity faces enormous threats, which have increased substantially over the last 50 years. The combined effects of habitat destruction and/or fragmentation, environmental contamination, over-exploitation of natural resources, and to a lesser extent, introduction of exotic species, have caused irreparable damage to China's plant biodiversity. Burgeoning economic and population growth have also contributed to this deterioration. It is believed that up to 5000 flora species are currently endangered in China, with some taxa having already become extinct. Although in recent years government authorities have made some efforts to preserve biodiversity, much work remains to be done. While China has established an extensive network of nature reserves and protected areas, encompassing more than 16% of the total land area, insufficient budgetary and staffing commitments are common limitations in their management structures. Ex-situ conservation is also deficient, primarily because the botanical gardens are not representative of several local floras, nor are they often of adequate size or representative of endangered species. The lack of effective and efficient environmental legislation and education are also problems that continue to accelerate the loss of plant biodiversity in China.     

防洪改善计划对鸟类的生态影响

香港特别行政区新界内有23 hm^2的鱼塘和22 hm^2的耕地,在“元朗-锦田-牛潭尾主要防洪改善计划”中被改变成两条防洪渠（防洪渠60号和43号）.于该防洪改善计划中的生态监察调查中发现这两条防洪渠的鸟类数量均较原先的生境大大减少.在耕地改变成防洪渠43号的过程中,鸟类密度由33.9 只/hm^2减少至2.2只/hm^2.在鱼塘改变成防洪渠60号的过程中,鸟类密度由5.2 只/hm^2 减少至0.4只/hm^2.研究亦发现一些原本在鱼塘和耕地很常见的鸟类物种因为生境被改变而消失.这些转变可能和食物,植被及生境复杂程度的减少有关.另一方面,为纾缓因这防洪改善计划中损失的耕地生境,渠务署在防洪渠43号的河岸铺上混凝土草格,促进植物繁衍,为鸟类提供生境.但研究发现以混凝土草格建造的草坡并未能提供有效的纾缓措施,取代耕地生境以减少生态影响.     

Comparative genomics of methicillin-resistant Staphylococcus aureus ST239: distinct geographical variants in Beijing and Hong Kong

Background

The ST239 lineage is a globally disseminated, multiply drug-resistant hospital-associated methicillin-resistant Staphylococcus aureus (HA-MRSA). We performed whole-genome sequencing of representative HA-MRSA isolates of the ST239 lineage from bacteremic patients in hospitals in Hong Kong (HK) and Beijing (BJ) and compared them with three published complete genomes of ST239, namely T0131, TW20 and JKD6008. Orthologous gene group (OGG) analyses of the Hong Kong and Beijing cluster strains were also undertaken.

Results

Homology analysis, based on highest-percentage nucleotide identity, indicated that HK isolates were closely related to TW20, whereas BJ isolates were more closely related to T0131 from Tianjin. Phylogenetic analysis, incorporating a total of 30 isolates from different continents, revealed that strains from HK clustered with TW20 into the ‘Asian clade’, whereas BJ isolates and T0131 clustered closely with strains of the ‘Turkish clade’ from Eastern Europe. HK isolates contained the typical φSPβ-like prophage with the SasX gene similar to TW20. In contrast, BJ isolates contained a unique 15 kb PT1028-like prophage but lacked φSPβ-like and φSA1 prophages. Besides distinct mobile genetic elements (MGE) in the two clusters, OGG analyses and whole-genome alignment of these clusters highlighted differences in genes located in the core genome, including the identification of single nucleotide deletions in several genes, resulting in frameshift mutations and the subsequent predicted truncation of encoded proteins involved in metabolism and antimicrobial resistance.

Conclusions

Comparative genomics, based on de novo assembly and deep sequencing of HK and BJ strains, revealed different origins of the ST239 lineage in northern and southern China and identified differences between the two clades at single nucleotide polymorphism (SNP), core gene and MGE levels. The results suggest that ST239 strains isolated in Hong Kong since the 1990s belong to the Asian clade, present mainly in southern Asia, whereas those that emerged in northern China were of a distinct origin, reflecting the complexity of dissemination and the dynamic evolution of this ST239 lineage.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-529) contains supplementary material, which is available to authorized users.     

香港桦木科一新种——香港鹅耳枥(英文)

报道了桦木科(Betulaceae)鹅耳枥属(Carpinus L.)一新种——香港鹅耳枥(C.insularis N.H.Xia,K.S.PangY.H.Tong)。香港鹅耳枥与太鲁阁鹅耳枥(C.hebestroma Yamamoto)及多脉鹅耳枥(C.polyneura Franch.)相似,但习性灌木状,叶具13~16对侧脉,先端锐尖,边缘锯齿的芒尖较短,果苞宽半卵形或半卵形,长8~14 mm,小坚果顶端密被长柔毛且疏具树脂状腺体,与后两者易于区别。     

Validation of the Chinese Version of the Children’s ChronoType Questionnaire (CCTQ) in school-aged children

ABSTRACT

The Children’s ChronoType Questionnaire (CCTQ) is a valid and reliable measure for assessing prepubertal children aged 4–11 years. The CCTQ is a parent-reported, 27-item questionnaire consisting of sleep-wake parameters for scheduled and free days (16 items), a morningness/eveningness scale (M/E, 10 items), and a five-point, single-item, chronotype score. The CCTQ has been translated into different languages, but a Chinese version is not available. In the present study, we aimed to produce a Chinese version of the CCTQ and test its validity and reliability on school-aged children. A total of 555 children aged 7–11 years were recruited from five primary schools. The parents were told to complete the CCTQ and record their child’s sleep pattern in a 7-day sleep diary. Sixty-six children and their parents were invited to participate in determining the test-retest reliability of the CCTQ over a 2-week interval, and their sleep patterns were assessed using a sleep diary. The internal consistency of the Chinese CCTQ M/E score as measured by Cronbach’s alpha was acceptable (0.74). Regarding the test-retest reliability of the instrument, moderate to strong Spearman’s correlation coefficients were found for most of the CCTQ – sleep-wake items (ρ = 0.52–0.86) and for the CCTQ-M/E total score (ρ = 0.78). For the concurrent validity, Spearman’s correlations between the sleep-wake parameters of the CCTQ and the sleep diary were moderate to high on both the scheduled days (ρ = 0.54 to 0.87) and free days (ρ = 0.36 to 0.60). For the correlations measured with actigraphs, significant correlations were found in the CCTQ sleep-wake parameters, including bedtime, get-up time, sleep latency, sleep period, time in bed, and mid-sleep point on both the scheduled (ρ = 0.31 to 0.76) and free days (ρ = 0.27 to 0.52), but not in sleep latency and sleep period on free days. The results of the present study suggest that the Chinese version of the CCTQ is a reliable and valid tool for assessing chronotypes in Chinese school-aged children in Hong Kong.