Mapping site indices for five Pacific Northwest conifers using a physiologically based model

Questions: How well can we predict tree growth potential (site index) of five, locally dominant tree species in reference to estimates made with a detailed vegetation classification? Location: The forested region of the Pacific Northwest, USA and Canada. Methods: We employed a physiologically based process model (3‐PG, Physiological Processes to Predict Growth) to generate estimates of site index under averaged climatic conditions (1971–2000) generated from hundreds of weather stations and extrapolated, with adjustments for topography, across the region at 1‐km resolution. The model was parameterized from published information, but we had to assume fixed values of soil water storage capacity at 200 mm and soil fertility at 70% of maximum across the region. Field estimates of site index for the five dominant species were derived from published correlations with detailed mapping of vegetation provided by The British Columbia Ministry of Forests and Range. Results: The site indices projected with the 3‐PG model for the five species combined, when compared with those produced by the Ministry of Forests and Range, produced an r² averaging ～0.5 with a standard error of 2.8 m at 50 yr, equivalent to 10% of the mean. Some of the variation may be attributed to inadequate information on soil properties. Importantly, the relationship between the two estimates was not significantly different from a 1:1 line, with an intercept of zero. Conclusions: The 3‐PG modelling approach offers a means of predicting spatial variation in site indices across the Pacific Northwest and provides a basis for predicting future site indices under a changing climate.     

A comment on the distribution of historical and contemporary livestock grazing across Australia: Implications for using dingoes for biodiversity conservation

Summary Understanding the causes of faunal declines is important for preserving Australia’s threatened fauna. Both predation and livestock grazing have been investigated as potential causes of declines, but some studies struggle to account for historical grazing impacts due to the lack of historical information on livestock distribution and grazing intensity. This article summarises some trends in the extent of historical and contemporary livestock grazing on mainland Australia. The cumulative effects of historical livestock grazing are discussed in the light of studies investigating the influences of predation and livestock grazing on faunal declines.     

Overproduction of human M₃ muscarinic acetylcholine receptor: an approach toward structural studies

Human M(3) muscarinic acetylcholine receptor (M3R), present in both the central and the peripheral nervous system, is involved in several neurodegenerative and autoimmune diseases. Recently, M3R overexpression has been suggested to play a role in certain forms of cancer, showing promise as a new potential pharmacological target. However, the lack of structural information hampered to develop a new potent selective and potent antagonist. We describe here different strategies for overexpressing functional M3R on the perspective of future biophysical studies. To achieve this goal, four tagged M3R genes were engineered and codon optimized. Different heterologous expression systems, including mammalian cells and viral transfection, were employed to overexpress M3R. Although codon optimization resulted in only twofold to threefold increase of M3R expression, we found that epitope tagging of the synthetic M3R, especially with hemagglutinin and Flag epitope tags, could improve M3R expression levels. On the other hand, viral transfection led to a yield of 27 pmol/mg protein that is the highest level reported so far for this receptor subtype in mammalian cells. Taking together several of the strategies used can help increasing M3R expression, not only to start purification efforts but also for secondary structural analysis trial and functional analyses.     

Flowering and Fruiting Patterns in a Subtropical Rain Forest,Taiwan

Reproductive patterns of tropical and temperate plants are usually associated with climatic seasonality, such as rainfall or temperature, and with their phylogeny. It is still unclear, however, whether plant reproductive phenology is influenced by climatic factors and/or phylogeny in aseasonal subtropical regions. The plant reproductive phenology of a subtropical rain forest in northern Taiwan (24°45′ N, 121°35′ E) was monitored at weekly intervals during a 7‐yr period (2002–2009). The flowering patterns of 46 taxa and fruiting patterns of 26 taxa were examined and evaluated in relation to climatic seasonality, phylogenetic constraints, and different phenophases. Our results indicated that most of the studied species reproduced annually. Additionally, both community‐wide flowering and fruiting patterns exhibited distinct annual rhythms and varied little among years. The community flowering peak matched seasonal changes in day length, temperature, and irradiance; while the community fruiting peak coincided with an increase in bird richness and the diet‐switching of resident omnivorous birds. In addition, phylogenetically closely related species tended to reproduce during the same periods of a year. Neither the mean flowering dates nor seasonal variation in solar radiation, however, was related to the fruit development times. Our results indicate the importance of abiotic, biotic, and evolutionary factors in determining the reproductive phenology in this subtropical forest.     

Breeding success and nest-site characteristics of Red-breasted Flycatchers Ficedula parva in a primeval forest

Capsule Predation is a major factor influencing the breeding success of Red-breasted Flycatchers under natural conditions.

Aims To examine the breeding success of Red-breasted Flycatchers in relation to nest-site characteristics and time of breeding.

Methods Data were collected during seven breeding seasons under natural conditions in Bia?owie?a National Park. We used survival time analysis to estimate changes in survival probability over time and breeding success in relation to first-egg date and nest-site characteristics.

Results Offspring fledged successfully from 51% of clutches, but the Kaplan–Meier estimate of survival was lower at 0.43. Of the unsuccessful clutches, 82% were lost to predators. The highest probability of loss was during egg-laying and in the second half of incubation. Breeding success was influenced by the height of the nest above the ground, but no relation to other nest-site characteristics was found.

Conclusion To avoid predation Red-breasted Flycatchers build nests in various sites that are more open than most cavity-nesting species. The position of the nest-sites allows the sitting female to observe her surroundings and to escape rapidly from the nest, giving the chance for a replacement clutch.     

Nesting success in Redshank Tringa totanus breeding on coastal meadows and the importance of habitat features used as perches by avian predators

Capsule Nest survival rates could not be explained by distance to habitat edges or other features used by predators.

Aims To investigate if predation on Redshank nests was affected by habitat characteristics at a local scale.

Methods We examined survival rates of Redshank nests on coastal meadows on the Baltic island of Gotland, Sweden, over two breeding seasons. We analysed nest survival rates in relation to several habitat characteristics that may benefit predators searching for nests. We examined existing studies concerning predation rates on wader nests in relation to edges and habitat features potentially used by avian predators.

Results We found no significant effects of distance to habitat edge or to nearest potential lookout for avian predators or to shoreline. Abundance of Lapwings Vanellus vanellus, an aggressive species with active nest-defence, did not have any significant effect on nest survival rate, nor did vegetation concealment of nests. Nest survival rates were significantly different between years and lower later in the season.

Conclusions There is only weak support for general effects on wader nest predation rates of proximity to edges and features used by avian predators. Simple mechanical management actions such as removal of trees and bushes on coastal meadows may not directly, and by itself, result in higher reproductive success of waders. Further understanding is needed of the behaviour of predators and the composition of the predator community in different landscapes in order to increase the efficiency of management actions to remove threats to vulnerable species on coastal meadows.     

Status and distribution of European Nightjars Caprimulgus europaeus in the UK in 2004

Capsule The population of Nightjars in the UK increased by over 36% between 1992 and 2004.

Aims To determine the population size and distribution of Nightjars in the UK and examine associations with forestry and heathland habitat features.

Methods A volunteer survey was supported by professional cover in remote parts of Wales, and areas of Dorset and lowland Scotland. Two visits to allocated 1-km squares were made between late May and mid-July. Each surveyor recorded the locations of calling males onto maps and the occurrence of habitat categories within 50 m of each Nightjar registration.

Results Observers surveyed 3264 1-km squares in 2004 and, on average, 78% of the target habitat (90% in southern England). The total number of males counted was 4131 (range 3850–4414), adjusted to 4606 (95% CL ± 913) to account for unsurveyed habitat. The adjusted total represented a 36% increase in 12 years. Nightjars were recorded in 275 10-km squares in 2004, a 2.6% increase since 1992. However, there was evidence of population decline and range contractions in northwest Britain, including north Wales, northwest England and in Scotland. In 2004, 57% of Nightjars were associated with forest plantations (similar to 1992) and 59% with heathland (slightly higher than in 1992).

Conclusion National objectives for Nightjar conservation (UK Biodiversity Action Plan: UKBAP) were reached in respect of population size and stability, but the target for a 5% range increase by 2003 was not met. The continued increase in the national population is probably attributable to habitat protection, management and restoration of heathlands, and the continued availability of clear-fell/young plantations in conifer forests. Management and/or protection/restoration/re-creation of these key habitats remains critical for the long-term objectives of UKBAP. The issue of providing foraging habitats, perhaps via agri-environment schemes, is also raised.     

Mark–recapture of Cerambyx welensii in dehesa woodlands: dispersal behaviour,population density,and mass trapping efficiency with low trap densities

The longhorn beetle, Cerambyx welensii Küster (Coleoptera: Cerambycidae), is an emerging pest involved in oak decline episodes in dehesa open woodlands. Larvae are xylophagous and cause considerable physiological, mechanical, and structural damages to trees. Chemical and biological control are currently unsatisfactory. Recent research has shown that mass trapping with a high density of baited traps (40 traps ha^?1) could be useful to manage C. welensii populations, although such a trap density was too high to be cost‐effective. In this 2‐year study (2010–2011) we investigated with mark–recapture methods in a large plot (1) the flight dispersal behaviour, (2) the adult population density, and (3) the efficiency of mass trapping at two low trap densities (one or four traps ha^?1). Results indicated that many adults were sedentary (60%) but flying adults displayed a strong propensity to move, both sexes dispersing on average more than 200 m and one male and one female flying at least 540 and 349 m, respectively. Recapture rates were high (0.26–0.35) and population density was estimated to be 6–22 adults ha^?1 with maximum likelihood models. Trapping efficiency ranged 48–61% with no significant effect of trap density or year. We conclude that results were not satisfactory enough to recommend mass trapping with low trap densities as control method for C. welensii and that more research is still required on the technical, ecological, and behavioural factors affecting control efficiency.     

Spatial and seasonal variation in niche partitioning between blue manakin (Chiroxiphia caudata) and greenish schiffornis (Schiffornis virescens) in southeastern Brazil

The diet of Chiroxiphia caudata and Schiffornis virescens were studied over three years in four forest sites in the southeastern Atlantic Forest of Brazil. Theory suggests that coexistence of similar species is possible by resource-use differences. To test this, patterns of niche overlap and niche breadth in diet were measured in different seasons and forest sites, based on fruit morphological traits and plant life forms. The results suggest seasonal and spatial variation in resource partitioning. During periods of high fruit availability, there was no evidence of fruit trait selection. In contrast, during periods of fruit scarcity in primary forests, there was evidence of niche partitioning, where C. caudata foraged for larger fruits in canopy and S. virescens searched for understory plants. The niche overlap was higher in secondary forest during periods of scarcity, when both species used small understory fruits.

Foi estudada a dieta de Chiroxiphia caudata e Schiffornis virescens durante três anos, em quatro tipos de fisionomias florestais no sudeste da Mata Atlântica, Brasil. A teoria sugere que a coexistência de espécies semelhantes é possível pelas diferenças no uso dos recursos. Assim, nós mensuramos a amplitude e sobreposição de nicho considerando a morfologia dos frutos consumidos e a forma de vida das espécies de plantas utilizadas em quatro tipos florestais e em diferentes estações. Os resultados sugerem mudanças sazonais e espaciais na partilha de recursos. Durante períodos de alta disponibilidade de frutos, não há evidências de partilha de recursos. Já em períodos de escassez de frutos nas florestas primárias, C. caudata consumiu frutos grandes presentes no dossel enquanto S. virescens utilizou os frutos pequenos do sub-bosque. Na floresta secundária, o período de escassez foi marcado por sobreposição intensa de nicho onde ambas as espécies consumiram frutos pequenos de sub-bosque.     

The New Zealand Scincidae (Reptilia: Lacertilia); a taxonomic and zoogeographic study

Abstract

The mohua (or yellowhead, Mohoua ochrocephala) is an endangered hole‐nesting passerine which is now absent from >75% of its former range. This paper describes an 11 year monitoring programme, which was set up to survey 14 populations at 12 key sites throughout the range of the mohua, in order to document the pattern of population change and provide early warning of likely local extinctions. Between 1983 and 1993, one mohua population became extinct. Five of the 14 populations declined significantly, and three of these were on the verge of extinction by 1993. One population increased, and seven did not change significantly, although a declining trend was recorded at five of these. Six population crashes coincided with irruptions of stoats (Mustela erminea) following heavy beech (Nothofagus) seeding.