Probabilistic reconstruction of ancestral protein sequences

Using a maximum-likelihood formalism, we have developed a method with which to reconstruct the sequences of ancestral proteins. Our approach allows the calculation of not only the most probable ancestral sequence but also of the probability of any amino acid at any given node in the evolutionary tree. Because we consider evolution on the amino acid level, we are better able to include effects of evolutionary pressure and take advantage of structural information about the protein through the use of mutation matrices that depend on secondary structure and surface accessibility. The computational complexity of this method scales linearly with the number of homologous proteins used to reconstruct the ancestral sequence.     

Carbon isotope composition of C4 grasses is influenced by light and water supply

The carbon isotope composition of C⁴ grasses has the potential to be used as an indicator of changes in the isotopic composition and concentration of atmospheric CO2, especially for climate reconstruction. The usefulness of C₄ grasses for this purpose hinges on the assumption that their photosynthetic discrimination against ¹³C remains constant in a wide range of environmental conditions. We tested this assumption by examining the effects of light and water stress on the carbon isotope composition of C₄ grasses using different biochemical subtypes (NADP-ME, NAD-ME, PCK) in glasshouse experiments. We grew 14 different C₄ grass species in four treatments: sun-watered, sun-drought, shade-watered and shade-drought. Carbon isotope discrimination (Δ) rarely remained constant. In general, Δ values were lowest in sun-watered grasses, greater for sun-drought plants and even higher for plants of the shade-watered treatment. The highest Δ values were generally found in the most stressed grasses, the shade-drought plants. Grasses of the NADP-ME subtype were the least influenced by a change in environmental variables, followed by PCK and NAD-ME subtypes. Water availability affected the carbon isotope discrimination less than light limitation in PCK and NAD-ME subtypes, but similarly in NADP-ME subtypes. In another experiment, we studied the effect of increasing light levels (150 to 1500 μmol photons m^?2 s^?1) on the Δ values of 18 well-watered C₄ grass species. Carbon isotope discrimination remained constant until photon flux density (PFD) was less than 700 μmol photons m^?2 s^?1. Below this light level, Δ values increased with decreasing irradiance for all biochemical subtypes. The change in A was less pronounced in NADP-ME and PCK than in NAD-ME grasses. Grasses grown in the field and in the glasshouse showed a similar pattern. Thus, caution should be exercised when using C4 plants under varying environmental conditions to monitor the concentration or carbon isotopic composition of atmospheric CO2 in field/glasshouse studies or climate reconstruction.     

Studies on the development and three-dimensional reconstruction of giant mitochondria and their nuclei in egg cells ofPelargonium zonale Ait.

Summary The preferential development of giant mitochondria and their nuclei (nucleoids) in the egg cells ofPelargonium zonale Ait. during megasporogenesis and megagametogenesis was examined by fluorescence microscopy, after Technovit embedding and 4,6-diamidino-2-phenylindole (DAPI) staining, fluorimetry for DNA content, using a video-intensified microscope photon-counting system (VIMPICS), and by three-dimensional reconstruction of mitochondrial nuclei (mt-nuclei). Reproductive cells during the megaspore mother cell, meiosis, tetrad, and functioning megaspore stages contained many small mitochondria with characteristic, uniformly DAPI-stained mt-nuclei about 0.3 m in diameter, containing a small amount of DNA (0.3 Mbp). During formation of the 2-, 4-, and 8-nucleate embryo sac, mt-nuclei did not markedly change in shape or DNA content. When the embryo sac formed and differentiation of each cell began, mitochondria and their nuclei in the egg cell took on a small ring or string-like shape. Accompanying the maturation of the embryo sac, they underwent progressive enlargement and gradually altered to long thick strings, or stacks of concentric or half concentric rings. By flower opening, they have developed to an extremely large size. One of these stacks of mt-nuclei was reconstructed in three dimensions; each ring in the stack was cup- or plate-shaped; 5 to 10 rings made up the stack, though each remained discontinuous from the others. From serial sections, we counted 44 mitochondria in one egg cell. Fluorometry using VIMPICS revealed that DNA amount within the stacked mitochondrion increased to 40 times that of the megaspore mother cell stage; a single stack of mitochondria contained 340–1700 Mbp DNA; which means that one egg cell contains at least 15000 Mbp mt-DNA, a value greater than the cell-nuclear DNA content.     

铅锌矿尾矿场植被重建的生态学研究Ⅰ.尾矿对种子萌发的影响

在实验条件下,供试的林木、农作物及牧草种子均能在铅锌矿尾矿中萌发,其中萌发率与非污染土壤中的相近,多数种子的萌发速率低于对照组。供试植物幼苗出土30天内没有死苗现象,但与对照相比,株高下降28.4%,复叶数减少34.1%,生物量下降52.6%.     

铅锌矿尾矿场植被重建的生态学研究：Ⅰ.尾矿对种子萌发的影响

在实验条件下,供试的林木、农作物及牧草种子均能在铅锌矿尾矿中萌发,其中萌发率与非污染土壤中的相近,多数种子的萌发速率低于对照组．供试植物幼苗出土３０天内没有死苗现象,但与对照相比,株高下降２８．４％,复叶数减少３４．１％,生物量下降５２．６％．     

利用马尾松年轮资料重建江苏暖湿地区气候的初步研究

利用树木年轮气候学方法,根据马尾松生长对气候变量具非线性响应,尝试重建江苏暖湿地区过去１１６年（１８７４～１９９０）的年平均气温和降水量。温度的重建效果优于降水量,实测值与重建值两者的缩减误差（ＲＥ）分别为０．１２和０．１０,两者的平均偏差百分率分别为２．３％和２０％。绝大部分重建结果可从观测记录和历史文献中得到验证,但在温度较高或降水量较多的若干年份,实测值与重建值有较大偏差。     

Eviostachya hoegii Stockmans在中国五通组的首次发现

首次描述了Eviostachya hoegii Stockmans的营养部分,通过大量标本的观察,修订了前人有关其生殖部分和解剖部分的描述,并对其生殖部分进行了复原.同意Emberger(1968)的观点,将其归于Eviostachyrales中.     

Global ecological niche conservatism and evolution in Olea species

Background and AimsClimate is an important parameter in delimiting coarse-grained aspects of fundamental ecological niches of species; evolution of these niches has been considered a key component in biological diversification. We assessed phylogenetic niche conservatism and evolution in 24 species of the family Oleaceae in relation to temperature and precipitation variables. We studied niches of 17 Olea species and 7 species from other genera of Oleaceae globally.MethodsWe used nuclear ribosomal and plastid DNA to reconstruct an evolutionary tree for the family. We used an approach designed specifically to incorporate uncertainty and incomplete knowledge of species’ ecological niche limits. We performed parsimony- and likelihood-based reconstructions of ancestral states on two independent phylogenetic hypotheses for the family. After detailed analysis, species’ niches were classified into warm and cold niches, wet and dry niches, and broad and narrow niches.Key ResultsGiven that full estimates of fundamental niches are difficult, we explore the alternative approach of explicit incorporation of knowledge of gaps in the information available, which allows avoidance of overestimation of amounts of evolutionary change. The result is a first synthetic view of evolutionary dynamics of ecological niches and distributional potential in a widespread plant family. Temperate regions of the Earth were occupied only by lineages that could derive with cold and dry niches; Southeast Asia held species with warm and wet niches; and parts of Africa held only species with dry niches.ConclusionsHigh temperature in Lutetian (Oligocene) and low temperature in Rupelian (Eocene) with major desertification events play important role for niche retraction and expansion in the history for Oleaceae clades. Associations between environmental niche characteristics and phylogeny reconstruction play an important role in understanding ecological niche conservatism, the overall picture was relatively slow or conservative niche evolution in this group.     

荒漠草原生态恢复与重建：人工植被推动下水分介导的系统响应、生态阈值与互馈作用

荒漠草原(生态区)横贯我国西北地区东部,生态地位十分重要。近二十年来,通过封育禁牧、退耕还林(草),植被覆盖显著改善,但是生态系统质量和稳定性依然不高。由于长期将荒漠草原单纯视作草原的一部分,对其生态系统过渡性、脆弱性和复杂性本质特征认识不足,造成了荒漠草原生态学研究与区域生态建设实践之间不同程度的脱节。在分析荒漠草原生态区未来在我国生态安全格局中突出的但是被一定程度上忽视的地位的基础上,进一步归纳了荒漠草原生态系统的一般特征,指出了生态恢复与重建研究中存在的主要问题。进而以人工植被引入荒漠草原生态工程为案例,分析了人工植被驱动荒漠草原生态恢复与重建的过程与机制,归纳了“植被-水文-土壤”互馈作用驱动生态系统层级响应模式,并展望了今后的发展趋势与研究方向。