A method for determining overall protein fold from NMR distance restraints

Summary We describe a simple method for determining the overall fold of a polypeptide chain from NOE-derived distance restraints. The method uses a reduced representation consisting of two particles per residue, and a force field containing pseudo-bond and pseudo-angle terms, an electrostatic term, but no van der Waals or hard shell repulsive terms. The method is fast and robust, requiring relatively few distance restraints to approximate the correct fold, and the correct mirror image is readily determined. The method is easily implemented using commercially available molecular modeling software.     

数学模型与自然保护科学

日益加剧的人类干扰和景观破碎化已危及全球的生物多样性。自然保护成为人类所面临的最重要也最富有挑战性的任务。指导这一实践的理论和原则极为需要。本文试图综述与自然保护科学有关的几个学科在理论和实际研究(尤其是模型)方面的近期成果以及发展趋势,从而提出自然保护模型的发展方向。文中涉猎基于不同方法论、不同组织水平的模型,并对数学模型在自然保护科学中的作用和实用性加以讨论。     

一种复合神经元网络结构的并行动力学及快速学习算法

提出两种功能互相不同的神经细胞组成的复合神经元网络(CNN)模型;导出一种特殊结构的CNN的并行动力学;而且证明了它的稳定性。在这些结果基础上,得到快速的假逆矩阵学习算法。计算机仿真试验证实学习算法与动力学稳定性的正确性,并表现出良好的容错性能与存储容量。     

缀块性和缀块动态:Ⅱ.描述与分析

在生态学中,“缀块”(patch)的概念早已在植被群落和海洋生态系统中浮游动植物空间分布研究中广泛应用。A.S.Watte早在1947年就强调缀块在植物群落结构分析中的重要性。实际上,缀块存在于地球的任何地方。森林可     

Characteristics of dispersal in sexually mature dragonflies

Abstract.

• 1 The population dynamics of a natural population of Sympetrum danae (Sulzer) were studied, by means of a mark—release—recapture method, to find indications of dispersal by mature adults. Additional information on orientation and the influence of phenotype (including age), density and weather was obtained by observations under natural conditions and in a large outdoor field cage.
• 2 80% of all mature adults caught around the natural pond were estimated to be immigrants. Considerable immigration was confirmed by the abdomen length of unmarked matures which did not accord with that expected from the locally emerged population. Total numbers captured and the minimum number known to be alive fell sharply at the time when most individuals were mature. At the same time, new matures continued to enter and disappear from the study area at an increasing rate.
• 3 Dispersive behaviour (escape flights) in the field enclosure was primarily age dependent in both sexes: it occurred from an age of 25–30 days onwards. This coincides with the time-lag between the emergence peak and increased dispersal in the field. Secondary effects on escape flights suggested that males tended to abandon low density areas.
• 4 Males flew relatively more southward than females.

     

Seasonal dynamics of the zoobenthic communities in the mesohaline zone of the Loire estuary (France)

The application of correspondence factorial analysis to four types of sediment in the upper reaches of the Loire estuary enabled the significance of environmental factors in the spatial distribution, abundance and seasonal dynamics of the biotic communities to be determined. In coarse sand, the communities are stable but species are few in number and population densities are low. In muddy sediments (from muddy sand to fluid mud) population densities are high but undergo seasonal fluctuations due to changes in the hydrological regime (especially the dissolved oxygen regime). This is true for the composition of the biotic communities. The oligohaline phase, in which the fluvial element is predominant, is characterized by abundance maxima due to freshwater species. The mesohaline phase, in which the marine element is predominant, exerts a restrictive action on population densities; certain species are supplanted by others, their development being governed by the quality of the environment.     

Horizontal distribution of crustaceans in Lake Glubokoe

A study has been made on the distribution of crustaceans along a profile of 6–9 stations from depths of less than 2 m to 20 m, in summer, autumn and early spring. The species composition, abundance, size-frequency distribution, biomass and diurnal dynamics were estimated. Many species abundant in the pelagic zone were found to be absent or scarce out to depths of 5 m. In the daytime, at depths out to 3 m, crustaceans greater than 1.0 mm were seldom found, while those 0.15–0.40 mm long were most abundant. At depths out to 5 m, not only was the total average size of crustaceans found to be smaller, but also that of individual species, including small ones: Ceriodaphnia and Chydorus. The biomass of crustaceans in shallow water and in the open lake differs in summer by more than 100 times, and in late autumn and early spring by more than 10 times. At the depth of 1 m, in none of the seasons did it exceed 0.026 mg l^-1. All the crustaceans except for nauplii and Chydorus considerably increased in numbers in the shallow water at night. The impoverishment of the littoral plankton in Lake Glubokoe is regarded as a specific case of the well-known phenomenon of ‘avoidance of the littoral’ by euplankton (Hutchinson, 1967; Kiselyov, 1980). It is pointed out that there is a possible relationship between diurnal horizontal migrations of plantivorous fish and the impoverishment of plankton near the shore. An attempt has been made to substantiate the assumption that the ‘avoidance of the littoral’ by pelagic crustaceans is due to high numbers of fish in shallow water.     

The seasonality of phytoplankton in African lakes

Although some study of the subject began in 1899, wide-ranging information from African water-bodies has only become available since 1950. Important developments included the establishment of long-term centres of research, the adoption of improved methods for quantitative algal sampling, the more intensive study of environmental conditions, the beginnings of experimental testing, and the improvement of taxonomic knowledge.At higher latitudes (> 20 °) examples of pronounced algal seasonality are long-established; they are accompanied and influenced by marked changes in radiant energy income and so water temperature, and often by effects of seasonal water input. Illustrations are given from lakes in Morocco and South Africa.More generally in Africa, including the tropical belt, annual patterns of phytoplankton seasonality are usually either dominated by hydrological features (water input-output) or by hydrographic ones (water-column structure and circulation). Examples of both types are discussed, together with instances (e.g. L. Volta) of combined hydrological and hydrographic regulation. In both the seasonal abundance of diatoms is often distinct and complementary to that of blue-green algae, with differing relationships to vertical mixing and water retention.Horizontal variability in the seasonal cycle is especially pronounced in the larger or morphometrically subdivided lakes. Some inshore-offshore differentiation is also known to affect phytoplankton quantity (e.g. L. George) and species composition (e.g. L. Victoria). Longitudinal differentiation is common in elongate basins especially when with a massive or seasonal inflow at one end (e.g. L. Turkana, L. Nubia, L. Volta); occasional terminal upwelling can also be influential (e.g. southern L. Tanganyika). Such examples grade into the longitudinally differentiated seasonality of flowing river-reservoir systems, as studied on the Blue and White Niles.The annual amplitude of population density, expressed in orders of magnitude (=log₁₀ units), is one measure of seasonal variability. It can exceed 3 orders both in systems subject to hydrological wash-out (e.g. Nile reservoirs) and in the more variable species components of lakes of long retention (e.g. L. Victoria). Low amplitudes can be characteristic of some components (e.g. green algae in L. Victoria) or of total algal biomass (e.g. L. George, L. Sibaya).Seasonal changes may be subordinated to inter-annual ones, especially in shallow and hydrologically unstable lakes (e.g. L. Nakuru).