Human disturbance and environmental factors as drivers of long‐term post‐fire regeneration patterns in Mediterranean forests

Question: What are the main forces driving natural regeneration in burned mature Mediterranean forests in the medium‐long term and what are the likely successional trajectories of unmanaged vegetation? Location: Valencia Region, eastern Spain. Methods: A wildfire burned 33 000 ha of Pinus halepensis and P. pinaster forest in 1979, and subsequent smaller wildfires took place between 1984 and 1996. The study was designed to sample the range of environmental and disturbance (fire recurrence and land use) conditions. The territory was classified into 17 different geomorphological and fire‐recurrence units. Vegetation cover and floristic composition were measured on a total of 113 plots (1000 m² each) randomly selected within these units. Results: The results show that 23 years after the fire the regenerated vegetation consists of successional shrublands, and that forest ecosystem resilience can be very low. The vegetation presents a strong correlation with most of the environmental variables, but fire (one or two fires), soil type and land use (in that order) are the main drivers of vegetation composition. Quercus coccifera shrublands persist on limestone soils while diverse types of other shrublands (dominated by seeder species) are found on marl soils. Conclusions: The results of this study indicate that disturbance factors strongly coupled to human activities, such as land use and fire, play a critical role in the current state of vegetation. Fire creates vegetation patches in different successional states while land use and soil type define the different types of shrubland in terms of their specific composition.     

Vegetation history of Lago Battaglia (eastern Gargano coast,Apulia, Italy) during the middle-late Holocene

A pollen and charcoal record from Gargano (southern Italy) provides new information on the vegetation history and environmental change in southern Italy during the middle to late Holocene. The chronological framework is provided by six AMS radiocarbon dates carried out on plant macroremains. Pollen diagrams record a Mediterranean vegetation along the coastland and a stable mixed oak forest at higher elevations between ca. 5900 and 4200 cal b.p. A sharp and dramatic fall of tree pollen concentrations and a change in fire frequencies occurred from approximately 4200 cal b.p. suggesting a climate change towards drier conditions. This event is coherent with regional and extra-regional palaeoclimatic records that suggest that a mid-Holocene dry period was experienced in southern Italy, southern Spain, and perhaps further afield. Human impact on vegetation seems to have occurred since about 2700 cal b.p.     

Changes in forest cover in China during the Holocene

Pollen map data at 2000-year intervals are used to reconstruct changes in Holocene forest cover in China north of the Yangtze River. In almost all regions, the early Holocene from 10 ka b.p. to 6 ka b.p. is characterised by an increase in forest cover although there was a reversal to lower forest cover at 8 ka b.p. in the eastern monsoon regions. A maximum of forest cover was reached at 6 ka b.p. in all regions except for Northeast China where forest cover peaked in the late Holocene. All regions except for Northeast China experienced a marked decline in forest cover after 6 ka b.p. Since 6 ka b.p., forest cover has decreased by about 92% in the middle and lower reaches of the Yellow River, 64% in the easternmost part of the Qinghai-Tibet Plateau and 37% between the Yangtze River and the Huaihe River. In contrast, forest cover in Northeast China increased significantly from 6 ka b.p., but has declined between 2 ka b.p. and the present. Changes in forest cover prior to 6 ka b.p. were probably caused by climate, but the evident drop in forest cover since that time in most regions may have been induced predominantly by human activities.     

Evolutionary dynamics of Rh2 opsins in birds demonstrate an episode of accelerated evolution in the New World warblers (Setophaga)

Low rates of sequence evolution associated with purifying selection can be interrupted by episodic changes in selective regimes. Visual pigments are a unique system in which we can investigate the functional consequences of genetic changes, therefore connecting genotype to phenotype in the context of natural and sexual selection pressures. We study the RH2 and RH1 visual pigments (opsins) across 22 bird species belonging to two ecologically convergent clades, the New World warblers (Parulidae) and Old World warblers (Phylloscopidae) and evaluate rates of evolution in these clades along with data from 21 additional species. We demonstrate generally slow evolution of these opsins: both Rh1 and Rh2 are highly conserved across Old World and New World warblers. However, Rh2 underwent a burst of evolution within the New World genus Setophaga, where it accumulated substitutions at 6 amino acid sites across the species we studied. Evolutionary analyses revealed a significant increase in d_N/d_S in Setophaga, implying relatively strong selective pressures to overcome long‐standing purifying selection. We studied the effects of each substitution on spectral tuning and found they do not cause large spectral shifts. Thus, substitutions may reflect other aspects of opsin function, such as those affecting photosensitivity and/or dark–light adaptation. Although it is unclear what these alterations mean for colour perception, we suggest that rapid evolution is linked to sexual selection, given the exceptional plumage colour diversification in Setophaga.     

基于可变模糊评价模型的东山湾生态系统健康评价

根据东山湾海域环境污染现状和生态系统的特点,从水质环境、沉积物环境、生物残毒以及海洋生物方面构建了东山湾生态系统健康评价指标体系,提出了基于可变模糊评价模型的海湾生态系统健康评价方法,并利用该方法对东山湾生态系统健康状况进行了评价。结果表明:东山湾春季生态系统健康指数为2.36,秋季为2.44,均处于"良与中之间,偏良"水平,春季略优于秋季。影响东山湾生态系统健康状况的主要负面指标因子为鱼卵及仔鱼密度(春秋季健康指数均值为4.95)、营养水平(秋季健康指数为4.47)和底栖生物生物量(春季健康指数为3.59)。实例研究表明该方法通过准则参数α和距离参数p的不同组合变化,以线性与非线性相结合,能够较客观系统、标准量化地评价海湾生态系统健康状况的优劣,。     

基于变权模型的舟山群岛生态安全预警

生态安全预警是生态安全研究的重要内容,对维护区域生态安全具有重要的指示意义.本文以浙江省舟山群岛为例,基于驱动力、压力、状态、影响、响应(DPSIR)框架模型构建了生态安全预警指标体系,使用变权模型对2000-2012年舟山市生态安全的预警等级进行测度,并使用马尔科夫预测方法对2013-2018年生态安全警情进行了预测.结果表明:变权模型能够有效地满足舟山群岛生态安全动态预警研究需要;2000-2012年,舟山群岛生态安全预警指数由0.286波动上升至0.484,警度等级从“重警”演变为“中警”,指示灯由“橙灯”演化为“黄灯”;2013-2018年,舟山群岛生态安全预警等级预测结果为“中警”,指示灯为“黄灯”.研究结果可为维护舟山群岛生态安全提供参考.     

生物节律基因period3的研究进展

昼夜节律是所有真核生物和部分原核生物的基本特征,一组节律表达的生物钟基因形成24 h周期振荡的自主调节转录-翻译反馈回路。period（per）基因家族是生物钟反馈回路中重要组成成分,per3基因是period基因家族成员之一。人类的per3基因定位于染色体1p36,其编码区第18外显子中含有一个灵长类特有的串联重复序列（variable number tandem repeat,VNTR）。该VNTR包含一簇理论上的磷酸化位点,能影响PER3蛋白的磷酸化降解,影响PER3蛋白的功能。近年研究发现,per3基因多态性与睡眠结构、睡眠紊乱发病年龄、睡眠剥夺后次日清晨执行能力等密切相关。     

单链抗体的表达

单链抗体(scFv)是具有抗体活性的最小功能结构单位,是基因工程抗体研究领域中的热点,具有比单克隆抗体在生物病原体、微生物污染和寄生虫病等预防、检测和治疗的独特优点和应用前景.鉴于其重要性,单键抗体在不同的表达系统中得到表达与研究.简要综速了scFv的表达.     

Genotypic characterization to identify markers associated with putative hypervirulence in Swedish Escherichia coli O157:H7 cattle strains

Aims: To establish whether investigated subtyping methods could identify any specific characteristics that distinguish Swedish VTEC O157:H7 strains isolated from cattle farms associated with human enterohaemorrhagic Escherichia coli (EHEC) cases from cattle strains isolated in prevalence studies. Methods and Results: Strains (n = 32) isolated in a dairy herd prevalence study and strains isolated from farms associated with human cases (n = 13) were subjected to typing. Partial sequencing of the vtx₂ genes could not identify any unique variants of vtx₂ or vtx_2c in strains associated with human cases. A specific variant of VTEC O157:H7, which was overrepresented among farms associated with human cases (P = 0·01), was by two different single‐nucleotide‐polymorphism (SNP) assays identified as clade 8, a subgroup of VTEC O157:H7 strains considered to be putatively hypervirulent. Multi‐locus variable number tandem repeat analysis (MLVA) typing of all strains produced similar results as pulsed‐field gel electrophoresis (PFGE) typing regarding clustering of the strains, but MLVA distinguished slightly better among strains than PFGE. Conclusion: In Sweden, VTEC O157:H7 strains from the putatively hypervirulent clade 8 are overrepresented among isolates from cattle farms associated with human cases compared with VTEC O157:H7 strains isolated in prevalence studies. Significance and Impact of the Study: Real‐time PCR SNP typing for clade 8 can be used to identify cattle farms that are at higher risk of causing EHEC infections in humans.