A multimetric index based on benthic macroinvertebrates for evaluation of Atlantic Forest streams at Rio de Janeiro State, Brazil

This study describes the application of a protocol for biological assessment of water quality at first to third order streams at Serra dos órg?os, an area covered by Atlantic Forest in Rio de Janeiro State, Brazil. Major impacts in the region are domestic effluents and deforestation. Our main objective is to establish biocriteria for the establishment of the Serra dos órg?os Multimetric Index (SOMI) based on benthic macroinvertebrates. We used data from previous studies, sampled by experienced biologists, from 1999 through 2002. The benthic macroinvertebrate community was sampled in 12 reference sites and seven impaired sites in three river basins: Guapimirim, Macaé and Grande, all from the same bioregion. From the 22 tested metrics, 6 were included in the SOMI (% Diptera, % Coleoptera, Family Taxa, EPT Taxa, BMWP-CETEC and % Shredders). Scores (5, 3 or 1) were developed for these metrics to allow for aggregation into the index. Seven intermediately impaired sites were used for evaluating the applicability of the multimetric index. We concluded that the SOMI is a robust easy-to-apply tool for biomonitoring programs in the Serra dos órg?os region, south-east Brazil. Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorised users. Handling editor: D. Dudgeon     

Evaluating the performance of benthic multi-metric indices across broad-scale environmental gradients

The usefulness of benthic multi-metric indices when assessing seafloor integrity across broad environmental gradients should be deliberated, as their lack of transparency might hide important sources of variation and fail to identify environmental change. This study compares the performance of two multi-metric indices; the Benthic Quality Index (BQI) and the Brackish water Benthic Index (BBI) between three sub-basins in the Baltic Sea. Both indices reflect the salinity-driven gradient in macroinvertebrate diversity and composition as well as changes in bottom water oxygen concentrations. The relative contribution of predictor variables for explaining index variation does, however, differ between sub-basins, resulting in the indices representing different aspects of the benthic community along the environmental gradient. This context-dependency is caused by inherent differences in benthic community characteristics between the sub-basins of the Baltic Sea, and how the communities are portrayed by the indices. An increased transparency of the importance of the different predictors for directing index values is needed for coherent classifications over broad environmental gradients, such as those occurring in large estuarine water bodies. Use of a weight of evidence table to combine multiple indicators would preserve transparency and be more likely to provide a robust assessment method that would detect seafloor degradation at an early stage.     

Ribosomal Tag Pyrosequencing of DNA and RNA Reveals “Rare” Taxa with High Protein Synthesis Potential in the Sediment of a Hypersaline Lake in Western Australia

Little is known about the potential activity of microbial communities in hypersaline sediment ecosystems. Ribosomal tag libraries of DNA and RNA extracted from the sediment of Lake Strawbridge (Western Australia) revealed bacterial and archaeal operational taxonomic units (OTUs) with high RNA/DNA ratios providing evidence for the presence of ‘rare’ but potentially “active” taxa. Among the ‘rare’ bacterial taxa Halomonas, Salinivibrio and Idiomarina showed the highest protein synthesis potential. Rare but ‘active’ archaeal OTUs were related to the KTK 4A cluster and the Marine-Benthic-Groups B and D. We present the first molecular analysis of the microbial diversity and protein synthesis potential of rare microbial taxa in a hypersaline sediment ecosystem.     

Anthropogenically driven habitat formation by a tube dwelling diatom on the Northern Patagonian Atlantic coast

The tube dwelling diatom Berkeleya rutilans (Trentepohl) Grunow plays a key role as early colonizer and bloom former in coastal zones. Exuding large quantities of extracellular polymeric substances (EPS), it can form dense colonies in mucilaginous macroscopic branches, containing thousands of cells. Due to their pronounced three dimensional growths of its mucilaginous structures, it supports a variety of organisms and traps grains and detritus, which makes it an important habitat former and ecosystem engineer, contributing to sediment stabilization, which is a crucial issue in sedimentary areas. In the present study we investigated the identity and structural morphology of B. rutilans, blooming in a tidal channel in Northern Patagonia (S40° 43′ W64° 56′) and experimentally tested its potential physiological responses (e.g. growth rate) to nutrient elevation. The observed morphological plasticity and measured high growth rates under nutrient exposure make B. rutilans a likely indicator for eutrophication in sedimentary marine habitats. As to our knowledge the present study provides the first record of B. rutilans for Argentinean waters, we discussed the potential reasons for its occurrence and evaluated the ecological impacts of its presence. Due to the observed high colonization capability and rapid response to environmental alterations (e.g. eutrophication, substrate changes) it seems to benefit from human activities, which will consequently favor its further expansion within the disturbed area.     

Spatial variation in density of stream benthic fishes in northern Hokkaido, Japan: does riparian vegetation affect fish density via food availability?

The densities of two benthic fishes, the Siberian stone loach (Noemacheilus barbatulus) and the wrinklehead sculpin (Cottus nozawae), and the biomass of their food resources (i.e., periphyton and benthic invertebrates) were compared between forest and grassland streams in northern Hokkaido, Japan, to examine whether riparian deforestation had positive effects on the benthic fishes via enhancement of food availability. The comparisons indicated that riparian vegetation had little influence on periphyton, invertebrates, or fishes. Regression analysis indicated that spatial variations in loach and sculpin densities were explained more by substrate heterogeneity, competitor abundance, or both, rather than by food abundance. However, when the two species were combined as benthic insectivores, a strong correlation was found between total benthic fish density and invertebrate biomass. Our results suggest that, although total benthic fish abundance was food limited, riparian vegetation had no positive effects via food availability on the benthic fishes in our streams.     

The evolution of deepwater dissolved oxygen in the northern South China Sea since 400 ka

The dissolved oxygen (DO) content of the ocean provides potential evidence and clues for the waxing and waning of marine productivity, ocean circulation, global climate change, and the evolution of ecological communities. On the basis of the analysis of the Benthic Foraminiferal Oxygen Index (BFOI), the percentage of epifaunal benthic foraminifers, and the redox-sensitive trace elements (Mo/Al) in Core MD12-3432, we reconstruct the evolution of deep water DO content in the northern South China Sea (SCS) during the past 400 ka and discuss the mechanisms of variable DO content. The results show that the changes of BFOI, Mo/Al, and the percentage of epifaunal benthic foraminifer present a similar pattern, which may reflect the variations of the DO content in seawater since 400 ka. Both variations in BFOI and Mo/Al indicate that the DO content was high during most time of marine isotope stage (MIS) 11 to mid-MIS 6, then decreased in late-MIS 6, and remained stable in MIS 5. It increased in MIS 4 and decreased until MIS 2, and then rose again. The non-synchronous variations between bottom water DO and benthic foraminiferal δ¹⁸O indicate that the DO content is not controlled by glacial-interglacial cyclic environmental variations. Comparing the biomarker productivity index with the DO content of water, we find that the DO content is affected mainly by productivity. Bulimina, Uvigerina and Chilostomella oolina are high productivity species. The accumulation rates of Bulimina and Uvigerina are higher during 61–15 kyr interval, but the accumulation rate of C. oolina is higher during 168–130 kyr. The results infer that different intensity of primary productivity and DO during these two periods. The DO and phytoplankton total (PT) show the opposite relation, which also indicates that the DO is affected by primary productivity, and the combined action of productivity and DO decides the growth of Bulimina, Uvigerina, and C. oolina. Besides the influences of productivity, the change of DO in the ocean is also affected by oceanic circulation.     

Microbial–meiofaunal interrelationships in coastal sediments of the Red Sea

Population density and biomass of bacteria and meiofauna were investigated seasonally in the sediments of the north-western bank of Red Sea. Samples of sediments were collected seasonally from three different stations to determine microphytobenthic biomass (chlorophyll a), protein, lipid, carbohydrate, and total organic matter concentrations. These investigations revealed that microbial components tended to increase their dominancy, whereas sensitive meiofauna were extremely reduced during the entire study period. Thus a very low density of the total meiofauna (with an annual average of 109 ± 26 ind./10 cm²) was recorded whilst the benthic microbial population densities exhibited higher values (ranging from 0.31 ± 0.02 × 10⁸ to 43.67 ± 18.62 × 10⁸/g dry sediment). These changes in the relative importance analysis of benthic microbial components versus meiofaunal ones seem to be based on the impact of organic matter accumulation on the function and structure of these benthic communities. Proteins, lipids and carbohydrates showed very low concentration values, and the organic matter mostly consisted of carbohydrates, reflecting lower nutritional values for benthic fauna in general and meiofauna in particular. The distribution of microbial and meiofaunal communities seems to be dependent on the quality of the organic matter rather than on its quantity. Total organic matter concentrations varied between 5.8 and 7.6 mg/g, with organic carbon accounting for only 32% of the total organic matter. Chlorophyll a attained very low values, fluctuating between 0.11 and 0.56 μg/g, indicating the oligotrophy of the studied area. The very low concentration of chlorophyll a in the Red Sea sediment suggests that the sedimentary organic matter, heterotrophic bacteria and/or protozoa constitute an alternative resource that is consumed by meiofauna when algae are less abundant. Protozoa, therefore, represent the “missing link in bacteria–meiofauna interaction in the Red Sea marine sediment ecosystem.     

Validity and reproducibility of benthic cover estimates made during broadscale surveys of coral reefs by manta tow

 There is limited information on the validity and reproducibility of estimates of benthic cover from manta tow surveys. To address this, benthic cover estimates from the same reef area were compared (i) among observers and (ii) with an independent assessment using under-water video. Benthic cover was classified into 11 categories. There was generally unbiased agreement within one cover category, both among observers (89%) and for comparisons between manta tow and video (86%). While estimates of dead coral cover were reproducible, they were not valid because the concordance between observer estimates and video estimates was not greater than would be expected by chance. Manta tow estimates of the cover of sand and rubble were biased in that they consistently overestimated sand and rubble cover in comparison with estimates from video. The results indicate that manta towing is generally effective for the broadscale estimation of live coral cover, providing observers receive adequate training. Accepted: 25 June 1999     

Laboratory Studies of Parasite Transmission Aspects between Hydrobia spp. (Gastropoda) and Corophium volutator (Amphipoda)

Aspects of parasite transmission between Hydrobia spp. and Corophium volutator, first and second intermediate host of digenetic trematodes, were investigated under laboratory conditions. H. ventrosa is used as an intermediate host by several trematode species. Under laboratory conditions the most frequently observed emergence from H. ventrosa was of cercariae of Maritrema subdolum. The number of cercariae shed per day varied considerably. It was observed that 30 cercariae on average and up to 450 cercariae at maximum can emerge from a single H. ventrosa per day. Cercarial production continued until the death of the snails. The life-span of cercariae of the species M. subdolum decreased as the water temperature increased. It can be concluded that under natural conditions the cercariae, after emerging, have a maximum period of 1 day in which to seek out their second intermediate host C. volutator. Almost all specimens of C. volutator exposed to cercariae of the species M. subdolum died within the test period of 6 days. High average cercarial densities caused short life-spans (<50 h), while at lower densities longer survival times were possible. For cercariae of other Trematoda species, we were unable to find any equally clear evidence of a reduction in the survival rate of C. volutator within the test period. Mortality of C volutator, and other effects of infestation, as observed in our experiment, can be assumed to be a result of the penetration process of the cercariae but they also can be attributed to the mesocercariae.     

Benthic cyanobacterial bloom impacts the reefs of South Florida (Broward County, USA)

Benthic cyanobacteria of the genus Lyngbya can form prominent mats and blooms in tropical and subtropical coral reef and seagrass habitats worldwide. A Lyngbya bloom on the reef tract offshore of Broward County, Florida, was first noted in 2002, and although it is seasonally variable in its distribution and abundance, it has persisted and spread over the past 3 years. In this study, the most abundant species of Lyngbya found in the blooms have been identified and compared to other species of Lyngbya by morphological and molecular methods. The most common species of Lyngbya is consistent with the properties of Lyngbya confervoides C. Agardh. The 16S ribosomal DNA sequence shares 88–92% identity with other known Lyngbya sequences, suggesting that this bloom consists primarily of a new, previously unsequenced species of Lyngbya. The second most common Lyngbya in the bloom is consistent with Lyngbya polychroa. This persistent bloom is a concern because it smothers octocorals and other invertebrates and negatively impacts these southeastern Florida reefs.