The Type II Arabidopsis Formin14 Interacts with Microtubules and Microfilaments to Regulate Cell Division

Formins have long been known to regulate microfilaments but have also recently been shown to associate with microtubules. In this study, Arabidopsis thaliana FORMIN14 (AFH14), a type II formin, was found to regulate both microtubule and microfilament arrays. AFH14 expressed in BY-2 cells was shown to decorate preprophase bands, spindles, and phragmoplasts and to induce coalignment of microtubules with microfilaments. These effects perturbed the process of cell division. Localization of AFH14 to microtubule-based structures was confirmed in Arabidopsis suspension cells. Knockdown of AFH14 in mitotic cells altered interactions between microtubules and microfilaments, resulting in the formation of an abnormal mitotic apparatus. In Arabidopsis afh14 T-DNA insertion mutants, microtubule arrays displayed abnormalities during the meiosis-associated process of microspore formation, which corresponded to altered phenotypes during tetrad formation. In vitro biochemical experiments showed that AFH14 bound directly to either microtubules or microfilaments and that the FH2 domain was essential for cytoskeleton binding and bundling. However, in the presence of both microtubules and microfilaments, AFH14 promoted interactions between microtubules and microfilaments. These results demonstrate that AFH14 is a unique plant formin that functions as a linking protein between microtubules and microfilaments and thus plays important roles in the process of plant cell division.     

Interactions Between Rhinanthus minor and Its Hosts: A Review of Water, Mineral Nutrient and Hormone Flows and Exchanges in the Hemiparasitic Association

At the ecological level, the effects of the facultative root hemiparasite Rhinanthus minor on the structure and functioning of its host communities are relative well described; yet until recently, the mechanistic basis for parasitic plant-driven community change and the physiological basis for the host-parasite interaction were poorly understood. Empirical incremental flow models, based on the increase in water, mineral nutrients, carbon assimilates or phytohormones between two defined time points, have been successfully employed to investigate the physiology of resource acquisition by- and distribution within host-parasitic plant associations. In this study we review the application of these empirical flow models to Rhinanthus-host associations showing the extent of and physiological basis of resource abstraction from the host and how this is profoundly influenced by soil nutrient status. We show that Rhinanthus primarily abstracts water and mineral nutrients via the apoplastic pathway through direct lumen-lumen connections with little resource acquisition via symplastic pathways. Nutrient status of the soil is shown to significantly influence the resource acquisition. We also investigate the hormonal regulation of resource acquisition by Rhinanthus showing pivotal roles for the key for the phytohormones abscisic acid (ABA) and cytokinins.     

The role of riparian trees in maintaining riverbank stability: A review of Australian experience and practice

Riverside vegetation is a significant factor influencing the occurrence and progress of streambed and riverbank erosion. Recent riparian management practice in Australia has focussed on re-establishing or maintaining native riparian vegetation in order to control or prevent erosion as well as regenerate or preserve the complex variety of in-stream and riverside habitats. This work presents an integrated review of field and experimental studies conducted in eastern Australia that evaluate native vegetation's role in mass failure of riverbanks. Several results of these studies have general application and include the following: (1) The presence of riparian forest on riverbanks significantly reduces the likelihood of erosion by mass failure due to reinforcement of riverbank soils by tree roots and this reduced likelihood of mass failure enables a narrower channel cross-section than would otherwise be the case for many Australian coastal streams. (2) A number of Australian tree species have apparently evolved roots that seek the permanent, summer water table in order to survive prolonged dry spells, these root systems are particularly effective in mass failure mitigation due to rooting depths that are commonly greater than 5 m and are sometimes well in excess of 20 m. (3) The so-called “Root-Area-Ratio method” of calculating the shear strength of root-reinforced soil using root tensile strength data and Waldron's [Waldron, L.J., 1977. The shear resistance of root-permeated homogenous and stratified soil. J. Soil Sci. Soc. Am. 41, 843–849] and Wu et al.’s [Wu, T.H., McKinnell, W.P., Swanston, D.N., 1979. Strength of tree roots and landslides on Prince of Wales Island, Alaska. Can. Geotech. J. 16, 19–33] simple root model leads to significant overestimation of the actual root-reinforcement due to (a) breakage or pull-out of roots that taper and narrow beneath the shear plane such that individual roots do not achieve the tensile strength calculated on the basis of root diameter at the shear plane; and/or (b) the fact that the soil mass fails progressively along the length of potential shear plane rather instantaneously across the entire shear plane.     

Investigating the disorder–order transition of calmodulin binding domain upon binding calmodulin using molecular dynamics simulation

We have studied the conformational transition of the calmodulin binding domains (CBD) in several calmodulin‐binding kinases, in which CBD changes from the disordered state to the ordered state when binding with calmodulin (CaM). Targeted molecular dynamics simulation was used to investigate the binding process of CaM and CBD of CaM‐dependent kinase I (CaMKI–CBD). The results show that CaMKI–CBD began to form an α‐helix and the interaction free energy between CaM and CaMKI–CBD increased once CaM fully encompassed CaMKI–CBD. Two series of CaM/CBD complex systems, including the complexes of CaM with the initially disordered and the final ordered CBD, were constructed to study the interaction using molecular dynamics simulations. Our analyses suggest that the VDW interaction plays a dominant role in CaM/CBD binding and is a key factor in the disorder–order transition of CBD. Additionally, the entropy effect is not in favor of the formation of the CaM/CBD complex, which is consistent with the experimental evidence. Based on the results, it appears that the CBD conformational change from a non‐compact extended structure to compact α‐helix is critical in gaining a favorable VDW interaction and interaction free energy. Copyright © 2009 John Wiley & Sons, Ltd.     

Phylogeographic patterns and conservation units of a vulnerable species,Cabot’s tragopan (<Emphasis Type="Italic">Tragopan caboti</Emphasis>), endemic to southeast China

Cabot’s tragopan (Tragopan caboti) is a pheasant endemic to southeast China and is protected under both national and global legislation due to ongoing decline in population size and increased habitat fragmentation. We investigated the phylogeographic patterns and examined the consistency between evolutionary units and assumed subspecies taxonomy in this species. Six populations across the whole species presenting a wide distribution range were sampled and two mitochondrial DNA segments (control region, CR and cytochrome b, cyt b) were used in this study. The results demonstrated a high level of genetic diversity (h = 0.97 in CR and 0.78 in cyt b) and significant differentiation among populations. Phylogenetic analyses strongly indicated two reciprocally monophyletic clades named the “West group” and “East group” that were not consistent with the present subspecies regional distribution. The divergence time between the two groups was estimated to be around 5.54 × 10⁵–8.7 × 10⁵ years ago, and the expansion times of the two groups were close (about 3 × 10⁵ years ago), indicating the effect of glaciation in intraspecific differentiation. Based on the results of genetic analyses combined with geographic isolation and distinct population history, our findings suggest that two management units (MUs) should be defined in T. caboti for conservation.     

Dipeptide hydrolysis by the dinuclear zinc enzyme human renal dipeptidase: Mechanistic insights from DFT calculations

The reaction mechanism of the dinuclear zinc enzyme human renal dipeptidase is investigated using hybrid density functional theory. This enzyme catalyzes the hydrolysis of dipeptides and β-lactam antibiotics. Two different protonation states in which the important active site residue Asp288 is either neutral or ionized were considered. In both cases, the bridging hydroxide is shown to be capable of performing the nucleophilic attack on the substrate carbonyl carbon from its bridging position, resulting in the formation of a tetrahedral intermediate. This step is followed by protonation of the dipeptide nitrogen, coupled with C-N bond cleavage. The calculations establish that both cases have quite feasible energy barriers. When the Asp288 is neutral, the hydrolytic reaction occurs with a large exothermicity. However, the reaction becomes very close to thermoneutral with an ionized Asp288. The two zinc ions are shown to play different roles in the reaction. Zn1 binds the amino group of the substrate, and Zn2 interacts with the carboxylate group of the substrate, helping in orienting it for the nucleophilic attack. In addition, Zn2 stabilizes the oxyanion of the tetrahedral intermediate, thereby facilitating the nucleophilic attack.     

Effect of rainfall interannual variability on the biomass and soil water distribution in a semiarid shrub community

The dynamics of biomass and soil moisture in semiarid land is driven by both the current rainfall and the ecosystem memory. Based on a meta-analysis of existing experiments, an ecosystem model was used to calculate the effect of the rainfall interannual variability on the pattern of biomass and soil moisture in a shrub community. It was found that rainfall interannual variability enabled shrubs to be more competitive than grasses, and to maintain the dominant role over a longer time. The rainfall interannual variability resulted in complex soil moisture dynamics. The soil water recharge in wet years alternated with discharge in drought years.     

Phenolic compounds and their anti-oxidative properties and protein kinase inhibition from the Chinese mangrove plant Laguncularia racemosa

Phenolic compounds, named integracin D (1), (7′R, 8′S, 8S)-8-hydroxyisoguaiacin (3), (2R, 3R) pinobanksin-3-caffeoylate (5) and threo-8S-7-methoxysyringylglycerol (6), respectively, were isolated from the Chinese mangrove plant Laguncularia racemosa (L) Gaertn. f. (Combretaceae), together with 23 known phenolic metabolites. Their structures were elucidated on the basis of extensive spectroscopic analyses including that of IR, UV, MS, CD, 1D and 2D NMR spectra as well as by comparison with literature data. Compound 5 showed significant anti-oxidative activity in the DPPH and TEAC free-radical-scavenging assays, while several of the phenolic compounds were tested for protein kinase inhibitory activity in an assay involving 24 different human tumor related protein kinases. Compounds 5, 7, and 23 showed potential inhibition with IC₅₀ values between 2.2 and 3.6 μg/mL toward individual kinases. The ellagic acid derivatives were tested for insecticidal activity.     

Abscisic acid relations of plants grown on tungsten enriched substrates

The effect of tungsten as a potential inhibitor of ABA biosynthesis in plants was tested both under controlled conditions in the greenhouse or laboratory and in the field at a site naturally enriched with tungsten. Although as predicted in all cases the activity of aldehyde oxidase was strongly inhibited by tungsten, in well watered, greenhouse-grown maize plants increased concentrations of tungsten did not reduce ABA concentration in tissues. Depending on the time of incubation, mostly an accumulation due to an increased net ABA synthesis could be observed. Under drought stress, however, tungsten may have an inhibitory effect on ABA accumulation. Field experiments with drought-stressed clover and dandelion plants from a habitat close to a former tungsten mine confirm those of the greenhouse and laboratory. The ineffectiveness of tungsten in decreasing ABA levels in well-watered plants and its minimal effects in inhibiting ABA accumulation of droughted plants indicate that it is unsuitable as an inhibitor of ABA biosynthesis.