Lodopyridones B and C from a marine sediment-derived bacterium Saccharomonospora sp.

HPLC-UV guided isolation of the culture broth of a marine bacterium Saccharomonospora sp. CNQ-490 has led to the isolation of two new natural products, lodopyridones B and C (1 and 2) along with the previously reported lodopyridone A (3). Their chemical structures were established from the interpretation of 2D NMR spectroscopic data and the comparison of NMR data with the lodopyridone A (3). Lodopyridones B and C (1 and 2) possess the thiazole, and chloroquinoline groups which are characteristic features of these molecules. Lodopyridones A–C show weak inhibitory activities on the β-site amyloid precursor protein cleaving enzyme 1 (BACE1).     

Inhibitory potential of flavonoids on PtdIns(3,4,5)P3 binding with the phosphoinositide-dependent kinase 1 pleckstrin homology domain

Many membrane-associated proteins are involved in various signaling pathways, including the phosphoinositide 3-kinase (PI3K) pathway, which has key roles in diverse cellular processes. Disruption of the activities of these proteins is involved in the development of disease in humans, making these proteins promising targets for drug development. In most cases, the catalytic domain is targeted; however, it is also possible to target membrane associations in order to regulate protein activity. In this study, we established a novel method to study protein-lipid interactions and screened for flavonoid-derived antagonists of PtdIns(3,4,5)P₃ binding with the phosphoinositide-dependent kinase 1 (PDK1) pleckstrin homology (PH) domain. Using an enhanced green fluorescent protein (eGFP)-tagged PDK1 PH domain and 50% sucrose-loaded liposomes, the protein-lipid interaction could be efficiently evaluated using liposome pull-down assays coupled with fluorescence spectrophotometry, and a total of 32 flavonoids were screened as antagonists for PtdIns(3,4,5)P₃ binding with the PDK1 PH domain. From this analysis, we found that two adjunct hydroxyl groups in the C ring were responsible for the inhibitory effects of the flavonoids. Because the flavonoids shared structural similarities, the results were then subjected to quantitative structure-activity relationship (QSAR) analysis. The results were then further confirmed by in silico docking experiments. Taken together, our strategy presented herein to screen antagonists targeting lipid-protein interactions could be an alternative method for identification and characterization of drug candidates.     

接种AM菌对西部黄土区采煤沉陷地柠条生长和土壤的修复效应

以采煤沉陷区柠条为宿主植物,研究接种丛枝菌根真菌(arbuscular mycorrhizal fungi,简称AM菌)对柠条生长和根际土壤的改良效应。结果表明:8月份接种AM菌比不接菌柠条的株高、冠幅和地径显著增加了29.11%,29.83%和14.81%,9月份接菌区柠条的根长、平均直径、根表面积和根体积分别比对照区增加了151.0%,34.2%,116.0%和129.3%。接种AM菌增强柠条的抗逆性,接菌区的柠条叶片可溶性糖含量和过氧化氢酶活性分别比对照区增加了13.4%和111.1%。8月份接种AM菌改善了土壤的生物理化性质,接菌区有机质、碱解氮、速效磷和速效钾比对照区分别增加7.06g/kg,140.0 mg/kg,1.82 mg/kg和16.72mg/kg,接种AM菌显著增加了根际土壤中真菌、放线菌、细菌数量和酸性磷酸酶活性。总之,接种AM菌促进采煤沉陷区柠条的生长和土壤的改良。     

京津冀地区城市化发展时空差异特征

随着京津冀一体化协同发展的提出,如何协调城市间城市化和产业发展的差异成为目前关注的焦点。因历史原因和政策影响,尤其在城市化发展方面地区之间存在较大差异,定量识别该区城市发展的时空差异性对于制定合理的区域协同发展政策具有重要的指导意义。基于1984—2012年社会经济统计数据,通过引入偏离度指数和变异系数,从人口、土地、社会、经济四方面研究了不同时期京津冀地区城市化发展时空差异特征。研究表明:(1)京津冀地区城市化4个方面的发展均呈整体上升趋势,尤其表现在经济和社会发展方面。整体增长幅度为:经济社会土地人口。(2)从发展速度看,京津冀地区人口与土地增速最快时期发生在2000—2004年;而社会与经济增速最快时期发生在1992—1996年;这些特征充分反映了我国阶段性政策的影响。(3)从城市化发展的驱动因子分析,京津冀地区人口与土地增长速度差异较小,发展趋势较为一致,呈现显著的正相关关系;经济、社会增长速度差异较小,发展趋势较为一致,表现出高度的正相关性;而人口与社会、人口与经济、土地与社会、土地与经济之间的相关性不显著。(4)京津冀地区城市化发展区域差异较大,不同时段各城市发展存在明显差异;在城市化进程中区域间最大差异性表现在土地的扩张,其次是人口增长,而经济和社会增长差异性相对较小。(5)人口、土地、社会、经济四项城市化驱动因子与城市生态因子的耦合协调度均不断提高。     

黄瓜幼苗光合作用对高温胁迫的响应与适应

以‘津优35号’黄瓜幼苗为试材,研究高温(HT: 42 ℃/32 ℃)和亚高温(SHT: 35 ℃/25 ℃)胁迫对黄瓜幼苗光合作用及生长量的影响.结果表明: 高温、亚高温明显抑制幼苗生长.随着胁迫时间的延长,黄瓜幼苗叶片的光合速率(P_n)逐渐降低,胞间CO₂浓度(C_i)趋于升高,气孔导度(g_s)、蒸腾速率(T_r)、光呼吸速率(P_r)和暗呼吸速率(D_r)先上升后下降,高温、亚高温引起P_n降低的主要原因是非气孔限制.高温、亚高温可使黄瓜幼苗叶片的暗下光系统Ⅱ最大光化学效率(F_v/F_m)、光下实际光化学效率(Φ_PSII)、光化学猝灭系数(q_P)和电子传递效率(ETR)显著降低,初始荧光(F_o)和非化学猝灭系数(NPQ)逐渐升高.随着胁迫时间的延长,HT处理的RuBP羧化酶(RuBPCase)和Rubisco活化酶(RCA)活性及其mRNA表达量逐渐降低,而SHT处理的胁迫初期变化不大,3 d后趋于降低;HT和SHT处理的景天庚酮糖-1,7-二磷酸酶(SBPase)和果糖-1,6-二磷酸醛缩酶(FBA)活性与mRNA表达均呈先升高后降低趋势.可见,适宜光强下短时亚高温处理黄瓜幼苗不会产生明显光抑制,高温胁迫会对其PSⅡ反应中心造成严重损伤;光合酶受高温胁迫诱导,但其诱导效应与温度升高幅度和高温持续时间有关.     

Simulating the fidelity and the three Mg mechanism of pol η and clarifying the validity of transition state theory in enzyme catalysis

Pol η belongs to the important Y family of DNA polymerases that can catalyze translesion synthesis across sites of damaged DNA. This activity involves the reduced fidelity of Pol η for 8‐oxo‐7,8‐dhyedro‐2′‐deoxoguanosin(8‐oxoG). The fundamental interest in Pol η has grown recently with the demonstration of the importance of a 3rd Mg2+ ion. The current work explores both the fidelity of Pol η and the role of the 3rd metal ion, by using empirical valence bond (EVB) simulations. The simulations reproduce the observed trend in fidelity and shed a new light on the role of the 3rd metal ion. It is found that this ion does not lead to a major catalytic effect, but most probably plays an important role in reducing the product release barrier. Furthermore, it is concluded, in contrast to some implications, that the effect of this metal does not violate transition state theory, and the evaluation of the catalytic effect must conserve the molecular composition upon moving from the reactant to the transition state. Proteins 2017; 85:1446–1453. © 2017 Wiley Periodicals, Inc.     

山西太岳山南部针阔混交林群落特征及空间分布格局

为探究针阔混交林群落的空间分布特性、种间关系及演替规律,该研究通过点格局分析方法中的Ripley’L函数对山西太岳山南部1 hm~2针阔混交林中主要乔木种群的空间分布格局及空间关联性进行了研究。结果表明:样地内共调查木本植物41科71属76种,以蔷薇科、毛茛科、唇形科、豆科、菊科、百合科为主,科的分布区类型主要以世界广布为主,属的分区类型以北温带为主;辽东栎(Quercus wutaishanica)、槲树(Quercus dentata)、油松(Pinus tabuliformis)和山杨(Populus davidiana)是该群落的主要树种,样地内的林木总径级结构与主要乔木种群的径级结构相似,呈近似正态分布。辽东栎和槲树的空间分布相似,随尺度增大种群的聚集性减弱并逐渐表现出随机分布的格局特征;油松和山杨在一定尺度范围内呈现聚集分布;主要树种均在一定尺度上表现为两两正相关,且槲树与油松、山杨在整个尺度内都表现为显著正相关。山西太岳山南部针阔混交林中各个乔木种群处于相对稳定的状态。     

贵州清水苑大洞遗址发掘简报

清水苑大洞位于贵州省惠水县摆金镇,遗址发现于1998年9月,因发现丰富石制品、骨制品、灰烬层和哺乳动物化石等遗物而为学术界所关注。2013年9至11月,中国科学院古脊椎动物与古人类研究所和贵州省文物考古研究所联合对清水苑大洞进行考古发掘,发掘区分A、B两区,揭露面积分别为4 m~2和6 m~2。A区揭露地层厚度约90cm,堆积物为灰白-灰黄色-灰黑色砂质黏土,共出土石制品2398件、动物化石及碎骨2000余件。石制品组合以小型石片工业为体,类型包括石核、石器、各类废片、石锤、磨石等,此外还有5件砸击品。石制品原料大多取自围岩内的燧石,剥片以硬锤锤击法为主,石制品以小型居多;刮削器为石器的主要类型,另有少量凹缺器;石器修理多以锤击法向片状毛坯的背面修理为主。~(14)C测年显示遗址形成于距今约11-14 ka BP,为旧-新石器时代过渡期。该遗址的发掘和研究对于探讨更新世末期古人类在贵州中部低海拔地区的适应生存方式具有重要意义。     

耻垢分枝杆菌宿主整合因子(IHF)对DNA拓扑结构的影响

结核分枝杆菌(Mycobaterium tuberculosis)是结核病的病原菌,每年导致数百万人死亡.对于分枝杆菌基本生物学特性的研究有助于新的药物及治疗手段的研发.耻垢分枝杆菌(M.smegmatis)是分枝杆菌属中的一种非致病菌,与结核分枝杆菌亲缘关系较近,是实验室常用的研究分枝杆菌的模式菌种.分枝杆菌主要编码三种染色质蛋白,类组蛋白HU、Lsr2和宿主整合因子IHF.为研究IHF在染色体包装中的作用,我们在大肠杆菌中表达、纯化了耻垢分枝杆菌IHF蛋白(MsIHF),并对其影响DNA拓扑结构的性质进行了系统分析.体外研究的结果表明,MsIHF以同二聚体的形式存在,其对负超螺旋DNA具有一定的结合偏好性,同时,该蛋白可以有效地固定DNA负超螺旋.进一步的研究表明,MsIHF可以调控拓扑异构酶的活性.MsIHF的结合明显地抑制拓扑异构酶Ⅰ的松弛活性,而与此相反,该蛋白可以轻微地促进旋转酶引入DNA负超螺旋的能力.以上结果提示,MsIHF可能通过调控拓扑异构酶的活性影响染色体DNA的结构,进而调控其包装.