洮河上游紫果云杉种群结构特征

该研究以洮河上游尕海-则岔自然保护区、卡车林区和冶力关林区的紫果云杉(Picea purpurea)天然种群为研究对象, 通过样地调查和数据统计, 绘制种群结构图, 编制静态生命表, 拟合并分析存活曲线, 运用数量化方法研究种群动态, 揭示种群生存现状, 预测种群发展趋势, 以期为该物种的保护、管理及结构恢复提供理论依据。结果显示: 3个林区紫果云杉种群自然更新能力强, 幼苗、幼树储量丰富, 幼小龄期死亡率普遍偏高; 尕海-则岔种群存活曲线符合Deevey-III型, 种群稳定结构完整, 卡车林区和冶力关林区种群存活曲线均符合Deevey-II型, 且均出现了局部衰退; 3个林区种群动态指数均大于0, 说明种群均属于增长型, 增长潜力为尕海-则岔>卡车>冶力关; 受随机干扰时卡车林区紫果云杉最敏感, 冶力关次之, 尕海-则岔种群最稳定。该研究表明: 竞争和自疏作用是造成紫果云杉幼小龄级个体存活率偏低的普遍因素, 3个林区不同的生存状况反映了紫果云杉种群在不同生境及生活史下生存能力的差异, 保护幼苗生存环境并提高幼苗质量和存活率是种群更新和发展的关键。尕海-则岔紫果云杉生存良好, 种群生存状况主要受自身生物学特性和环境因子的影响; 卡车林区主要受人为影响, 种群结构遭到破坏; 冶力关林区受分布限制, 造成种群结构不稳定, 须采取一定的人工措施来促进种群更新与增长。     

氮和水分添加对内蒙古荒漠草原放牧生态系统土壤呼吸的影响

土壤呼吸是生态系统碳循环的重要组成部分, 同时也是评价生态系统健康状况的重要指标, 对于评估退化草地恢复过程中生态系统功能具有重要意义。该研究在内蒙古四子王旗短花针茅(Stipa breviflora)荒漠草原长期放牧实验平台上进行, 该平台设置对照(CK)、轻度(LG)、中度(MG)和重度(HG) 4个放牧强度。通过在4个放牧处理区设置氮、水添加实验处理, 探讨不同放牧强度背景下, 氮、水补充对荒漠草原土壤呼吸过程的影响。结果表明: (1)历史放牧强度除2015年对土壤呼吸无显著影响, 2016和2017年都有显著影响, 放牧区3年平均土壤呼吸速率基本都高于对照区。此外, 氮和水分添加显著增加了MG区土壤呼吸速率, HG区氮、水同时添加对土壤呼吸速率有显著增加作用; (2)无论是历史放牧强度, 还是氮、水添加处理, 都没有改变荒漠草原生长季土壤呼吸速率的季节动态变化趋势, 土壤呼吸速率基本表现为单峰曲线模式, 峰值出现在水热同期的7月份; (3)不同年份生长季土壤呼吸速率对氮、水处理的响应并不相同, 氮添加至第3年产生显著影响。水分添加在平水年份(2015和2017年)对土壤呼吸产生显著影响, 但在丰水年份(2016年)无显著影响。氮、水共同添加分别在CK、LG和HG区3年平均土壤呼吸速率显著高于单独加水处理, 说明氮添加的有效性依赖于水分条件, 两者表现为协同作用; (4)不同处理下荒漠草原土壤呼吸的温度敏感性(Q₁₀)值介于1.13-2.41之间, 平均值为1.71。在无氮、水添加时, 放牧区的Q₁₀值都小于CK区, 总体表现为CK 大于 MG 大于 LG 大于 HG; 加水和氮水共同添加处理后, Q₁₀值都有明显增加, 其中NW处理下Q₁₀值都增加到2.0以上。上述结果说明在过去受不同放牧强度影响的荒漠草原在停止放牧后的恢复过程中, 土壤水分仍是影响土壤呼吸的主导环境因子, 外源氮添加只有在满足一定水分供给的基础上才起作用, 尤其是过去的重度放牧区土壤呼吸速率对氮、水补充的响应最为强烈。该研究结果可以为评估荒漠草原恢复过程中土壤呼吸速率受养分和水分影响提供基础资料和依据。     

末次盛冰期以来观光木的潜在地理分布变迁

观光木(Tsoongiodendron odorum)是木兰科的古老残遗物种, 目前正面临严峻的生存威胁, 属于极小种群濒危植物。通过生态位模型(ENM)能够重建观光木地理分布格局的历史变迁, 探究气候变化对该物种分布的影响, 并了解其地理分布与气候需求间的关系, 从而为全球变暖背景下观光木的保护提供理论基础。该文基于96条现代分布记录和8个环境变量, 采用最大熵(MaxEnt)模型模拟观光木在末次盛冰期、全新世中期、现代和未来(2061-2080年, RCP 8.5)的潜在分布区, 利用SDM toolbox分析观光木的地理空间变化, 并综合贡献率、置换重要值和Jackknife检验来评估气候因子的重要性。研究结果表明: (1)观光木的高度适生区在南岭地区, 末次盛冰期时没有大尺度向南退缩, 很可能在山区避难所原地存活; (2)在全新世中期和未来两个增温的气候情境下, 观光木的分布区均表现为缩减, 其中未来分布的减幅更大, 表明气候变暖对观光木的生长有一定的负面影响; (3)总体上看, 观光木各个时期的地理分布范围相对稳定, 说明观光木对气候变化有一定的适应能力, 人为活动或自身繁育问题可能是致濒的重要原因, 并建议对广东和广西群体进行优先保护。     

强力霉素抗性基因目标供体菌、受体菌和接合子的筛选及鉴定

目的为进一步研究环境中病原微生物目标供体菌强力霉素抗性基因(Dox)水平传播机制奠定基础。方法以强力霉素抗性基因为筛选指标,通过药敏试验从7个菌株中筛选出遗传型分别为Dox~RX~S的候选供体菌和Dox~SX~R的候选受体菌(X代表不是强力霉素的抗生素),将供、受体菌共培养后筛选出遗传型为Dox~RX~R的接合子。分别测定X对目标供体菌、Dox对目标受体菌的最小抑菌浓度。对目标供、受体菌从形态学、生理生化、分子生物学和BIOLOG方面进行鉴定。结果研究的7个病原菌均为多重耐药,最多能耐受15种抗生素,对链霉素、萘啶酮酸和磺胺二甲嘧啶的耐药率最高(100%),对庆大霉素、诺氟沙星和环丙沙星的耐药率最低(0%)。目标供体菌、受体菌和接合子Con-Ⅱ基因型分别为Dox~RKan~S、Dox~SKan~R和Dox~RKan~R。Kan对目标供体菌的最小抑菌浓度为0.310 0μg/mL,Dox对目标受体菌的最小抑菌浓度为0.048 8μg/mL。目标供体菌(Dox~RKan~S)鉴定为Escherichia coli O157:H7(E.coli O157:H7),目标受体菌TR-M30-1(Dox~SKan~R)鉴定为产酸克雷伯菌。结论目标供体菌为E.coli O157:H7(Dox~RKan~S),目标受体菌为TR-M30-1(Dox~SKan~R),接合子为Con-Ⅱ(Dox~RKan~R)。     

Increased diversity and concordant shifts in community structure of coral‐associated Symbiodiniaceae and bacteria subjected to chronic human disturbance

Both coral‐associated bacteria and endosymbiotic algae (Symbiodiniaceae spp.) are vitally important for the biological function of corals. Yet little is known about their co‐occurrence within corals, how their diversity varies across coral species, or how they are impacted by anthropogenic disturbances. Here, we sampled coral colonies (n = 472) from seven species, encompassing a range of life history traits, across a gradient of chronic human disturbance (n = 11 sites on Kiritimati [Christmas] atoll) in the central equatorial Pacific, and quantified the sequence assemblages and community structure of their associated Symbiodiniaceae and bacterial communities. Although Symbiodiniaceae alpha diversity did not vary with chronic human disturbance, disturbance was consistently associated with higher bacterial Shannon diversity and richness, with bacterial richness by sample almost doubling from sites with low to very high disturbance. Chronic disturbance was also associated with altered microbial beta diversity for Symbiodiniaceae and bacteria, including changes in community structure for both and increased variation (dispersion) of the Symbiodiniaceae communities. We also found concordance between Symbiodiniaceae and bacterial community structure, when all corals were considered together, and individually for two massive species, Hydnophora microconos and Porites lobata, implying that symbionts and bacteria respond similarly to human disturbance in these species. Finally, we found that the dominant Symbiodiniaceae ancestral lineage in a coral colony was associated with differential abundances of several distinct bacterial taxa. These results suggest that increased beta diversity of Symbiodiniaceae and bacterial communities may be a reliable indicator of stress in the coral microbiome, and that there may be concordant responses to chronic disturbance between these communities at the whole‐ecosystem scale.     

Heterogeneous genetic invasions of three insecticide resistance mutations in Indo‐Pacific populations of Aedes aegypti (L.)

Nations throughout the Indo‐Pacific region use pyrethroid insecticides to control Aedes aegypti, the mosquito vector of dengue, often without knowledge of pyrethroid resistance status of the pest or origin of resistance. Two mutations (V1016G + F1534C) in the sodium channel gene (Vssc) of Ae. aegypti modify ion channel function and cause target‐site resistance to pyrethroid insecticides, with a third mutation (S989P) having a potential additive effect. Of 27 possible genotypes involving these mutations, some allelic combinations are never seen whereas others predominate. Here, five allelic combinations common in Ae. aegypti from the Indo‐Pacific region are described and their geographical distributions investigated using genome‐wide SNP markers. We tested the hypothesis that resistance allele combinations evolved de novo in populations versus the alternative that dispersal of Ae. aegypti between populations facilitated genetic invasions of allele combinations. We used latent factor mixed‐models to detect SNPs throughout the genome that showed structuring in line with resistance allele combinations and compared variation at SNPs within the Vssc gene with genome‐wide variation. Mixed‐models detected an array of SNPs linked to resistance allele combinations, all located within or in close proximity to the Vssc gene. Variation at SNPs within the Vssc gene was structured by resistance profile, whereas genome‐wide SNPs were structured by population. These results demonstrate that alleles near to resistance mutations have been transferred between populations via linked selection. This indicates that genetic invasions have contributed to the widespread occurrence of Vssc allele combinations in Ae. aegypti in the Indo‐Pacific region, pointing to undocumented mosquito invasions between countries.     

Genetic evidence for the origin of Aedes aegypti,the yellow fever mosquito,in the southwestern Indian Ocean

Aedes aegypti is among the best‐studied mosquitoes due to its critical role as a vector of human pathogens and ease of laboratory rearing. Until now, this species was thought to have originated in continental Africa, and subsequently colonized much of the world following the establishment of global trade routes. However, populations of this mosquito on the islands in the southwestern Indian Ocean (SWIO), where the species occurs with its nearest relatives referred to as the Aegypti Group, have received little study. We re‐evaluated the evolutionary history of Ae. aegypti and these relatives, using three data sets: nucleotide sequence data, 18,489 SNPs and 12 microsatellites. We found that: (a) the Aegypti Group diverged 16 MYA (95% HPD: 7–28 MYA) from its nearest African/Asian ancestor; (b) SWIO populations of Ae. aegypti are basal to continental African populations; (c) after diverging 7 MYA (95% HPD: 4–15 MYA) from its nearest formally described relative (Ae. mascarensis), Ae. aegypti moved to continental Africa less than 85,000 years ago, where it recently (<1,000 years ago) split into two recognized subspecies Ae. aegypti formosus and a human commensal, Ae. aegypti aegypti; (d) the Madagascar samples form a clade more distant from all other Ae. aegypti than the named species Ae. mascarensis, implying that Madagascar may harbour a new cryptic species; and (e) there is evidence of introgression between Ae. mascarensis and Ae. aegypti on Réunion, and between the two subspecies elsewhere in the SWIO, a likely consequence of recent introductions of domestic Ae. aegypti aegypti from Asia.     

Taxonomic differences shape the responses of freshwater aerobic anoxygenic phototrophic bacterial communities to light and predation

Aerobic anoxygenic phototrophic (AAP) bacteria are a phylogenetically diverse and ubiquitous group of prokaryotes that use organic matter but can harvest light using bacteriochlorophyll a. Although the factors regulating AAP ecology have long been investigated through field surveys, the few available experimental studies have considered AAPs as a group, thus disregarding the potential differential responses between taxonomically distinct AAP assemblages. Here, we used sequencing of the pufM gene to describe the diversity of AAPs in 10 environmentally distinct temperate lakes, and to investigate the taxonomic responses of AAP communities in these lakes when subjected to similar experimental manipulations of light and predator removal. The studied communities were clearly dominated by Limnohabitans AAP but presented a clear taxonomic segregation between lakes presumably driven by local conditions, which was maintained after experimental manipulations. Predation reduction (but not light exposure) caused significant compositional shifts across most assemblages, but the magnitude of these changes could not be clearly related to changes in bulk AAP abundances or taxonomic richness of AAP assemblages during experiments. Only a few operational taxonomic units, which differed taxonomically between lakes, were found to respond positively during experimental treatments. Our results highlight that different freshwater AAP communities respond differently to similar control mechanisms, highlighting that in‐depth knowledge on AAP diversity is essential to understand the ecology and potential role of these photoheterotrophs.     

Balancing selection in Pattern Recognition Receptor signalling pathways is associated with gene function and pleiotropy in a wild rodent

Pathogen‐mediated balancing selection is commonly considered to play an important role in the maintenance of genetic diversity, in particular in immune genes. However, the factors that may influence which immune genes are the targets of such selection are largely unknown. To address this, here we focus on Pattern Recognition Receptor (PRR) signalling pathways, which play a key role in innate immunity. We used whole‐genome resequencing data from a population of bank voles (Myodes glareolus) to test for associations between balancing selection, pleiotropy and gene function in a set of 123 PRR signalling pathway genes. To investigate the effect of gene function, we compared genes encoding (a) receptors for microbial ligands versus downstream signalling proteins, and (b) receptors recognizing components of microbial cell walls, flagella and capsids versus receptors recognizing features of microbial nucleic acids. Analyses based on the nucleotide diversity of full coding sequences showed that balancing selection primarily targeted receptor genes with a low degree of pleiotropy. Moreover, genes encoding receptors recognizing components of microbial cell walls etc. were more important targets of balancing selection than receptors recognizing nucleic acids. Tests for localized signatures of balancing selection in coding and noncoding sequences showed that such signatures were mostly located in introns, and more evenly distributed among different functional categories of PRR pathway genes. The finding that signatures of balancing selection in full coding sequences primarily occur in receptor genes, in particular those encoding receptors for components of microbial cell walls etc., is consistent with the idea that coevolution between hosts and pathogens is an important cause of balancing selection on immune genes.