应用GeneXpert MTB/RIF对肺外结核的快速检测及评估

目的 评估GeneXpert MTB/RIF检测肺外结核分枝杆菌的准确性,并与传统方法进行比较。 方法 选取2016年6月至2017年6月在本院就诊的144例疑似肺外结核病患者,对所有标本分别进行金胺“O”荧光染色镜检、液体培养及药敏试验、固体培养及比例法体外药敏试验和Xpert法检测。 结果 收集的144例疑似肺外结核标本中,确诊108例,以胸水、淋巴结活检和脓液感染较多,另36例阴性患者中,10例为非结核分枝杆菌感染。Xpert试验的敏感性为28.73%,特异性为96.00%,其阳性预测值和阴性预测值均高于其他3种检测方法。在阳性检出率方面,Xpert试验高于涂片镜检(χ2=17.39,P2=8.64,P2=2.56,P>0.05)。固体培养、液体培养和Xpert试验3种方法对结核分枝杆菌利福平耐药率检测差异无统计学意义(P>0.05),耐药率分别为8.33%、9.68%和11.11%,且Xpert试验方法检测出2株耐多药结核分枝杆菌,平均耗时2.5 h。 结论 GeneXpert MTB/RIF可以作为一种筛选及快速检测工具应用于肺外结核的诊断,同时可作为检测MDR TB的一种指标。     

肠道菌群对耐碳青霉烯类肠杆菌科细菌定殖抗性的研究进展

耐碳青霉烯类肠杆菌科细菌(carbapenem-resistant Enterobacteriaceae,CRE)在肠腔中定殖通常先于或并存于CRE的感染.正常情况下,定殖的CRE、肠道菌群和宿主相互作用,处于稳定平衡的状态,当肠道菌群出现失调时,肠道正常菌群失去对定殖CRE的抵抗力,增加CRE感染的风险.大量研究表明...     

基于氢氧稳定同位素的黄河兰州段河岸植物水分来源

多枝柽柳和旱柳是北方地区河岸生态修复的良好树种,具有护河防洪、调节区域气候的作用和营造河岸地带植被景观的功能。本研究选取黄河兰州段沿岸2处样点,采集了多枝柽柳和旱柳木质部以及各潜在水源的样品,利用氧同位素直接对比法、贝叶斯混合模型MixSIAR和相似性比例指数(PS指数),分析了多枝柽柳和旱柳对各潜在水源的利用率以及两者之间的水分利用关系。结果表明:在整个生长季,浅层土壤水(0～30 cm)是多枝柽柳和旱柳的主要水分来源,利用率分别为28.3%和24.4%,多枝柽柳对河水的利用率最小(16.6%),旱柳对地下水的利用率最小(17.9%);在土壤含水量较低的月份,植物会增加对河水和地下水的利用比例,样点S₁和S₂的PS指数分别为91.0%和87.7%,两个样点均在5月的PS指数最大,不同月份的水分利用关系存在一定的差异;处于河漫滩这一特殊地理位置,多枝柽柳和旱柳对各潜在水源的利用比较平均,最大程度地获取各潜在水源的水分,是一种最优的吸水模式。本研究可为开展黄河兰州段河岸休闲旅游活动和黄河流域生态环境保护中植物水分管理提供一定的理论基础。     

辽宁省食源性副溶血性弧菌毒力基因、血清分型及耐药性分析

研究辽宁省2017-2020年市售水产品及其制品中分离的158株副溶血性弧菌的毒力基因、血清分型和耐药性, 为食源性疾病的暴发和散发进行评估和预警。

采用多重荧光定量PCR技术对毒力基因tlh、tdh和trh进行检测, 同时检测血清分型; 采用肉汤稀释法测定副溶血性弧菌MIC值并分析其耐药性。

158株副溶血性弧菌中均携带tlh基因, 携带tdh基因的菌株2株, 携带trh基因的菌株2株, 同时携带tdh基因和trh基因的菌株1株; 158株中67株血清型为O2(含K不分型), 39株为O3(含K不分型), 携带tdh和trh毒力基因的菌株血清型均为O3;副溶血性弧菌122株(77.22%)对头孢唑啉耐药, 36株(22.78%)对头孢西丁耐药, 30株(18.99%)对氨苄西林耐药, 18株菌呈现耐受2类及以上的多重耐药性。携带毒力基因的5株副溶血性弧菌对头孢唑啉均耐药。

大多数食源性副溶血性弧菌不携带毒力基因, O2血清型(42.41%)是辽宁省食源性副溶血性弧菌的主要血清型, 其次为O3(24.68%); 副溶血性弧菌对头孢唑啉显著耐药, 少数菌表现出多重耐药, 提示应继续加强水产品及其生食制品中副溶血性弧菌的致病性和耐药性监测。

     

大连市一起由境外输入引起的本土新冠肺炎关联病例的病毒基因组特征分析

了解引起大连市本土新型冠状病毒肺炎（COVID-19）的新型冠状病毒（SARS-CoV-2）流行株的基因组特征和变异情况,追溯SARS-CoV-2来源。

选取2022年8月20日—9月14日97例由境外输入引起的COVID-19关联病例的样本。采用SARS-CoV-2全基因组靶向扩增结合高通量测序技术（Ion Torrent测序平台）进行全基因组测序。分析SARS-CoV-2的基因组特征、核苷酸和氨基酸突变位点和基因分型。构建进化树,结合病例的流行病学资料,溯源SARS-CoV-2流行株。

共获得97例SARS-CoV-2全基因组序列,基因组全长29 735～29 741 bp,平均测序深度1 457×～50 485×,测序覆盖率范围95.9%～100.0%。同NCBI数据库中的SARS-CoV-2参考基因组（NC_045512）序列相比,97例SARS-CoV-2全基因组序列共享75个核苷酸突变位点,22例在此基础上新增1～3个突变位点。75个共享突变位点类型包括：4个非编码区和7个基因编码区,其中基因编码区的70个突变位点,来自基因ORF1ab、S、ORF3a、E、M、ORF8、N。共享的氨基酸突变类型包括15个同义突变和51个非同义突变。97例SARS-CoV-2全基因组序列,Pangolin分型为BA.5.2.1.21 （BF.21进化分支）型,Nextstrain分型为22B型,GISAID分型为GRA型。经与大连SARS-CoV-2基因库的序列比对,与8月9日境外输入的编号20220809-1和20220809-2病例共享75个核苷酸突变位点,高度同源。进化分析结果显示,此次SARS-CoV-2流行株与同时期日本大阪SARS-CoV-2流行株共同处于BF.21进化分支上,与病例20220809-1和20220809-2流行病学调查中的来源国日本一致。

此次SARS-CoV-2流行株属于Omicron变异株（BF.21进化分支）,来源于日本。

     

Mean time to resolution of gene duplication

The mean time to resolution of gene duplication (T_r) is studied in this paper under the double null recessive (DNR) and haplo-insufficient (HI) models within the same analytical and simulation framework. We show that when population size is not too small (more precisely Nμ > 0.1), T_r for unlinked duplication is usually larger than that for linked and T_r for unlinked duplication under the HI model might be greatly prolonged, which were consistent with previous observations. Furthermore, by analytical approach we here indicate the primary underlying mechanism is that the frequency of the original (or wild-type) chromosomal haplotype of the linked duplication decreases nearly exponential to zero with time while that of the unlinked decreases quickly to an quasi-equilibrium; and this phenomenon is particularly profound under the HI model, because the quasi-equilibrium frequency of the original chromosomal haplotype (x₀) under the HI model is higher than that under the DNR model. These results suggest that recombination and HI model might jointly contribute to the marked prolongation of T_r even in a modest population. The prolonged T_r and higher quasi-equilibrium frequency of the original allele at both duplicated loci might have offered more opportunities for the emergence of novel genes.     

Enhanced aerobic granulation and nitrogen removal by the addition of zeolite powder in a sequencing batch reactor

The aim of this study was to evaluate the impact of zeolite powders on feasibility of rapid aerobic granulation in the column-type sequencing batch reactors. After 90 days' operation, aerobic granular sludge was formed in both reactors by altering influent chemical oxygen demand/nitrogen (COD/N) ratios. R1 with zeolite powders had better removal capabilities of COD and total nitrogen than R2, which was without zeolite powders. Mixed liquor volatile suspended solid concentrations of the two reactors were 7.36 and 5.45 g/L, while sludge volume index (SVI₃₀) values were 34.9 and 47.9 mg/L, respectively. The mean diameters of aerobic granular sludge in the above two reactors were 2.5 and 1.5 mm, respectively. Both reactors achieved the largest simultaneous nitrification and denitrification (SND) efficiency at an influent COD/N ratio of 8; however, R1 exhibited more excellent SND efficiency than R2. The obtained results could provide a novel technique for rapid aerobic granulation and N removal simultaneously, especially when treating nitrogen-rich industrial wastewater.     

Up-Regulation of MiR-300 Promotes Proliferation and Invasion of Osteosarcoma by Targeting BRD7

Increasing reports suggest that deregulated microRNAs (miRNAs) might provide novel therapeutic targets for cancers. However, the expression and function of miR-300 in osteosarcoma is still unknown. In our study, we found that the expression of miR-300 was up-regulated in osteosarcoma tissues and cells compared with paired adjacent non-tumor bone tissues and osteoblastic cells using RT-qPCR. The enforced expression of miR-300 could promote cell proliferation, invasion and epithelial-mesenchymal transition (EMT). Moreover, we identified that bromodomain-containing protein 7 (BRD7), a new tumor suppressor gene, was a direct target of miR-300. Ectopic expression of BRD7 could significantly inhibit miR-300-promoted proliferation, invasion and EMT. Therefore, our results identify an important role for miR-300 in osteosarcoma through regulating BRD7 expression.     

Different mechanism of LPS-induced calcium increase in human lung epithelial cell and microvascular endothelial cell: a cell culture study in a model for ARDS

Acute respiratory distress syndrome (ARDS) is a contemporary term incorporating the historic ‘acute lung injury’ and the colloquial term ‘shock lung’. ARDS remains a serious and enigmatic human disease, causing significant mortality. The mechanisms involved at the alveolar cell/capillary endothelial interface have been explored but to date we lack clarity on the role of intracellular calcium ([Ca²⁺]i) fluxes across this interface. To explore the mechanisms of Ca²⁺ induced inflammatory reaction in epithelial cells and pulmonary microvascular endothelial cells (HMVEC) located at the two sides of blood-air barrier, lung epithelial A549 and HMVEC cells were treated with LPS. Our results demonstrated that LPS evoked the increase of [Ca²⁺]i, TNF-α and IL-8 in both cells types. The [Ca²⁺]i increases involved intracellular but not extracellular Ca²⁺ sources in A549, but both intracellular and extracellular Ca²⁺ sources in HMVEC cells. The effects of LPS on both cells types were completely inhibited by the combination of LPS and CaSR-targeted siRNA. Furthermore, LPS-inhibited cell proliferations were significantly reversed by the combined treatment. Therefore, LPS induced different mechanisms of [Ca²⁺]i increase during the activation of CaSR in A549 and HMVEC cells, which translates into functional outputs related to ARDS.     

人体基因组随机单拷贝顺序的分离及其在染色体上的定位

本文从构建杂种细胞14-7-1的基因组文库出发,用种特异的探针分离出含有人体基因组顺序的重组子,并进一步分析了其中13个克隆,得到8个单拷贝顺序。通过与已建立的杂种细胞克隆分布板杂交以及染色体的原位杂交方法,将1个单拷贝顺序FD11-1定位在11p11-q11上。由于已经报道在11号染色体上具有3个连锁群,它们分别位于11p15、11p13和11q13上,因此,FD11-1有可能为11号染色体连锁基因图的建立提供1个有意义的座位。