Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data

Oresitrophe and Mukdenia (Saxifragaceae) are epilithic sister genera used in traditional Chinese medicine. The taxonomy of Mukdenia, especially of M. acanthifolia, has been controversial. To address this, we produced plastid and mitochondrial data using genome skimming for Mukdenia acanthifolia and Mukdenia rossii, including three individuals of each species. We assembled complete plastomes, mitochondrial CDS and nuclear ribosomal ETS/ITS sequences using these data. Comparative analysis shows that the plastomes of Mukdenia and Oresitrophe are relatively conservative in terms of genome size, structure, gene content, RNA editing sites and codon usage. Five plastid regions that represent hotspots of change (trnH-psbA, psbC-trnS, trnM-atpE, petA-psbJ and ccsA-ndhD) are identified within Mukdenia, and six regions (trnH-psbA, petN-psbM, trnM-atpE, rps16-trnQ, ycf1 and ndhF) contain a higher number of species-specific parsimony-informative sites that may serve as potential DNA barcodes for species identification. To infer phylogenetic relationships between Mukdenia and Oresitrophe, we combined our data with published data based on three different datasets. The monophyly of each species (Oresitrophe rupifraga, M. acanthifolia and M. rossii) and the inferred topology ((M. rossii, M. acanthifolia), O. rupifraga) are well supported in trees reconstructed using the complete plastome sequences, but M. acanthifolia and M. rossii did not form a separate clade in the trees based on ETS + ITS data, while the mitochondrial CDS trees are not well-resolved. We found low recovery of genes in the Angiosperms353 target enrichment panel from our unenriched genome skimming data. Hybridization or incomplete lineage sorting may be the cause of discordance between trees reconstructed from organellar and nuclear data. Considering its morphological distinctiveness and our molecular phylogenetic results, we strongly recommend that M. acanthifolia be treated as a distinct species.     

Trehalose synthase of Mycobacterium smegmatis: purification, cloning, expression, and properties of the enzyme.

Trehalose synthase (TreS) catalyzes the reversible interconversion of trehalose (glucosyl-alpha,alpha-1,1-glucose) and maltose (glucosyl-alpha1-4-glucose). TreS was purified from the cytosol of Mycobacterium smegmatis to give a single protein band on SDS gels with a molecular mass of approximately 68 kDa. However, active enzyme exhibited a molecular mass of approximately 390 kDa by gel filtration suggesting that TreS is a hexamer of six identical subunits. Based on amino acid compositions of several peptides, the treS gene was identified in the M. smegmatis genome sequence, and was cloned and expressed in active form in Escherichia coli. The recombinant protein was synthesized with a (His)(6) tag at the amino terminus. The interconversion of trehalose and maltose by the purified TreS was studied at various concentrations of maltose or trehalose. At a maltose concentration of 0.5 mm, an equilibrium mixture containing equal amounts of trehalose and maltose (42-45% of each) was reached during an incubation of about 6 h, whereas at 2 mm maltose, it took about 22 h to reach the same equilibrium. However, when trehalose was the substrate at either 0.5 or 2 mm, only about 30% of the trehalose was converted to maltose in >or= 12 h, indicating that maltose is the preferred substrate. These incubations also produced up to 8-10% free glucose. The K(m) for maltose was approximately 10 mm, whereas for trehalose it was approximately 90 mm. While beta,beta-trehalose, isomaltose (alpha1,6-glucose disaccharide), kojibiose (alpha1,2) or cellobiose (beta1,4) were not substrates for TreS, nigerose (alpha1,3-glucose disaccharide) and alpha,beta-trehalose were utilized at 20 and 15%, respectively, as compared to maltose. The enzyme has a pH optimum of about 7 and is inhibited in a competitive manner by Tris buffer. [(3)H]Trehalose is converted to [(3)H]maltose even in the presence of a 100-fold or more excess of unlabeled maltose, and [(14)C]maltose produces [(14)C]trehalose in excess unlabeled trehalose, suggesting the possibility of separate binding sites for maltose and trehalose. The catalytic mechanism may involve scission of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose, as [(3)H]glucose incubated with TreS and either unlabeled maltose or trehalose results in formation of [(3)H]disaccharide. TreS also catalyzes production of a glucosamine disaccharide from maltose and glucosamine, suggesting that this enzyme may be valuable in carbohydrate synthetic chemistry.     

红原鸡与家鸡的亲缘关系研究

对中国红原鸡滇地亚种和海南亚种与我国茶花鸡,泰和鸡和寿光鸡等地方鸡种以及芦花鸡,洛岛红等外国鸡种进行了血型（３个位点,１３个等位基因）,蛋白质（酶）多态（５个位点,１１个等位基因）和ＤＮＡ指纹分析,结果表明,红原鸡与茶花鸡（原始型品种）的亲缘关系较近;与泰和鸡,寿光鸡,芦花鸡,洛岛红（进化型品种）的亲缘关系较远,呈红原鸡－茶花鸡－泰和鸡,寿光鸡或芦花鸡,洛岛红这样一个进化阶梯,以上结果与国外资料（     

黄土高原部分地区180－73万年间孢粉植物群和环境演变初探

根据黄土高原３个剖面的孢粉资料及测年数据,恢复了本区１８０－７３万年期间的植被面貌。在此基础上,结合中国和全球其它地区的孢粉、构造、地层、水系演化和火山活动等特征。将此期间植被、气候和环境的演化划分为３个主旋回,６个主要演化阶段,１０个亚阶段和５个事件。初步认识到,该时间段的气候环境演化有较大波动,且这些变化不限于局部地区,而是区域性的,是多种因素（内外动力）作用的结果,且有规律可循。     

云南元谋小河地区古猿地点的小型猿类化石

本文记述的云南元谋小河地区古猿地点发现的一种小型猿类。它的牙齿形态比晚中新世的禄丰粗壮池猿进步。而牙齿的某些形态介于粗壮池猿和现生长臂猿之间,它的发现为探讨现生长臂猿的起源与进货提供了新的化石依据。依哺乳动物群的初步研究,其时代稍晚于禄丰古猿地点的时代。鉴于它的形态特征和地史分布,作者将它订为一新属新种：进步滇猿Ｄｉａｎｏ ｐｉｔｈｅｃｕｓ ｐｒｏｇｒｅｓｓｕｓ ｇｅｎ．ｅｔ ｓｐ．ｎｏｖ。     

湘鄂与闽粤猕猴颅骨的多变量分析

本文是中国猕猴湖南－湖北和广东－福建种群颅骨的多变量分析,结果表明,二者的面宽和颅肌的形态结构除有明显的性二型外,还存在较大的差异。湖南－湖北种群的颅骨结构相对大于福建广东种群。它们与云南南部和海南岛猕猴颅骨的判别分别结果表明,由于地理和生态隔离,四者雌雄两性颅骨的形态结构均有较大的差异,达到种群间的显著差异水平,分别应属不同的亚种。     

关中小麦品种产量构成因素的相互关系和产量育种目标

对关中地区不同年代及当前大面积推广的小麦品种（系）的产量及其构成因素进行了遗传分析和通径分析。结果表明：陕西关中地区近期小麦品种的产量育种目标的趋势是在提高现有穗粒数的基础上,保持现有的穗数（７００万／ｈｍ＾２）及千粒重（３８ｇ左右）,以求在提高品种产量潜力的同时,保持或增加品种的稳定性能;或是大幅度提高穗粒数（３５粒左右）,适当提高千粒重（４０ｇ左右）,适当降低穗数（６００万／ｈｍ＾２左右）,以