Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data

Oresitrophe and Mukdenia (Saxifragaceae) are epilithic sister genera used in traditional Chinese medicine. The taxonomy of Mukdenia, especially of M. acanthifolia, has been controversial. To address this, we produced plastid and mitochondrial data using genome skimming for Mukdenia acanthifolia and Mukdenia rossii, including three individuals of each species. We assembled complete plastomes, mitochondrial CDS and nuclear ribosomal ETS/ITS sequences using these data. Comparative analysis shows that the plastomes of Mukdenia and Oresitrophe are relatively conservative in terms of genome size, structure, gene content, RNA editing sites and codon usage. Five plastid regions that represent hotspots of change (trnH-psbA, psbC-trnS, trnM-atpE, petA-psbJ and ccsA-ndhD) are identified within Mukdenia, and six regions (trnH-psbA, petN-psbM, trnM-atpE, rps16-trnQ, ycf1 and ndhF) contain a higher number of species-specific parsimony-informative sites that may serve as potential DNA barcodes for species identification. To infer phylogenetic relationships between Mukdenia and Oresitrophe, we combined our data with published data based on three different datasets. The monophyly of each species (Oresitrophe rupifraga, M. acanthifolia and M. rossii) and the inferred topology ((M. rossii, M. acanthifolia), O. rupifraga) are well supported in trees reconstructed using the complete plastome sequences, but M. acanthifolia and M. rossii did not form a separate clade in the trees based on ETS + ITS data, while the mitochondrial CDS trees are not well-resolved. We found low recovery of genes in the Angiosperms353 target enrichment panel from our unenriched genome skimming data. Hybridization or incomplete lineage sorting may be the cause of discordance between trees reconstructed from organellar and nuclear data. Considering its morphological distinctiveness and our molecular phylogenetic results, we strongly recommend that M. acanthifolia be treated as a distinct species.     

一套新的籼稻初级三体的选育和细胞学鉴定

以秋水仙素处理中籼３０３７幼苗,从其后代中获得同源三倍体１株。为选育成套初级三体,将中籼３０３７同源三倍体茎节幼芽置于试管中离体繁殖,繁殖后的同源三倍体种于田间,授以正常中籼３０３７的花粉。获得３０１３粒种子,成苗１０６３株。通过染色体数目检查,共获得３０２株三体植株。这些三体按其形态特征可分为１２类,对每类三体植株分别通过粗线期的染色体鉴定,获得了１２种初级三体,依据额外染色体长度递减的顺序分别定名为三体１、三体２、………三体１２。     

有机磷农药对土壤动物群落结构的影响研究

本文研究了有机磷农药废水灌溉对土壤动物群落结构的影响,并探讨了影响机理,结果表明,土壤动物种类和数量随着农药影响程度的增加而减少,在农药污染影响严重的１、２区,计有土壤动物２１类和２２类,动物平均密度为２８５７１个／ｍ＾２和５１２６９个／ｍ＾２,受中度和轻蔗污染影响的３、４区分别有３５类和４７类,平均密度为５９２８５个／ｍ＾２,１５６５８７个／ｍ＾２。污染区土壤动物种类的减少主要由于常见类群和稀有     

脏器微血管对荧光素钠通透性的实验方法

大鼠颈动脉注射１％ＦｌＮａ,荧光显微镜下活体观察肠系膜微血管血流状态及ＦｌＮａ的渗出情况,并在不同时间点经股动脉采血,测定血浆内ＦｌＮａ浓度随时间的变化,利用组织匀浆测定不同脏器中ＦｌＮａ的分布,再辅以冰冻切片进行观察。活体观察发现,ＦｌＮａ注入体内后,经微血管迅速向周围组织渗出,最后汇集于淋巴管,血浆及组织匀浆ＦｌＮａ浓度的测定表明,ＦｌＮａ浓度随时间的变化呈指数衰减,各脏器ＦｌＮａ的分布极不相同。冰冻切片也显示了同样的分布差别。这些结果表明,我们所建立的方法可直观、定量地反映ＦｌＮａ在微血管的通透情况。     

人体超微弱发光图像中的信号检验

用近期研制的具有单光子探测能力的超高灵敏度成像系统获得了人体体表生物超微弱发光的强度数据。为分析图像中的信号检验,二项分布被用于人手不同时间累积发光图像中的信号显著性检验,证实人手存在超微弱生物发光,手指的发光强度在３００～５５０ｐｈｏｔｏｎｓ／ｓ范围内,全手的发光强度在８５０～１２００ｐｈｏｔｏｎｓ／ｓ范围内。     

高压静电场处理沙棘插条生根状况的初步研究

用高压静电场处理沙棘插条研究生根状况,方法简便易于处理,该装置适于进行大规模的处理,从目前研究表明：高压静电场对沙棘插条有正刺激效应,并以电场强度为３．９ｋｖ／ｃｍ,时间为４０分钟处理最佳。     

生物超微弱发光的两维探测

本文介绍了自行研制的二套系统及其应用。1．高灵敏荧光显微镜系统,该系统探测灵敏度达到10－6lx量级,比普通CCD系统提高了104倍,系统用宽量程照度计对微弱光成象性能进行了标定,在给出细胞荧光图象的同时,可以给出每一象元的发光强度,并可给出视觉更易分辨的光强的三维显示和伪彩色图象。在该系统上得到了分红菌甲素在Hela细胞中的分布图象,Hela细胞加入竹红菌甲素后的光照损伤及抗氧化剂维生素E等对细胞的保护图象。2．光子计数成象系统,该系统灵敏度达10-8lx量级,可探测到单个光子及其分布,在其上得到了绿豆芽,树叶,昆明鼠,人手及手指的超微弱发光的光子图象,并用统计理论进行了信号检验。     

用细胞色素C法检测非真空电子束辐射的间接作用

本文提出了一种检测非真空电束辐射的间接作用的一种方法,根据氧化型和还原型的细胞色素Ｃ的吸收光谱不同,从而测量非真空电子束作用对应的辐射分解的自由基总量。     

常用食品防腐剂抗菌作用的研究

采用杯碟法和琼脂平板点种法分别测定２０种常用食品防腐剂对３０株菌的抑菌圈直径和最低抑菌浓度,借此判断药剂抗菌力的大小。实验结果表明,在所测２０种防腐剂中,对细菌抑制力最强者是乙酸,对霉菌和酵母菌抑制力最强者是富马酸二甲酯。     

In vivo sequence variability of human immunodeficiency virus type 1 envelope gp120: association of V2 extension with slow disease progression.

According to the rate of depletion of CD4 cell counts, we grouped 12 cases of human immunodeficiency virus type 1 (HIV-1) infection as 6 rapid (21.0 to 33.8 cells per microl per month) and 6 slow (0.9 to 7.9 cells per microl per month) progressors and determined the individual viral quasispecies patterns by sequencing the genome region encoding the V1, V2, and V3 loops of envelope protein. Although the quasispecies structures varied widely from one individual to another, a strong correlation was observed between a low rate of disease progression and a high degree of genetic diversity of HIV-1. Furthermore, the V2 loop extension was observed specifically in individuals with slow or no disease progression, whereas basic amino acid substitutions in V3 characteristic of a viral phenotype shift from non-syncytium inducing to syncytium inducing were observed in patients with advanced stages of disease regardless of their rate of disease progression. Studies with recombinant viruses suggested that elongation of V2 potentially restricts the capacity of HIV-1 to replicate in macrophages. Thus, our results suggest the association of distinct sequence features of both V3 and V2 with particular patterns of disease progression. Elongation of the V2 loop may be a good predictor of slow disease progression, while basic substitutions of V3 without elongation of V2 are characteristic of rapid progression.