Picoplankton community structure along the northern Iberian continental margin in late winter-early spring

The surface distribution of autotrophic and heterotrophic picoplanktonwas assessed in 24 transects perpendicular to the coast alongthe N and NW Iberian peninsula shelf in late winter and earlyspring 2002. Community structure was analyzed by flow cytometry(FC) and found to be strongly influenced by hydrography. Typicallate winter conditions were found during the survey, characterizedby the presence of the poleward Portugal coastal counter current(PCCC) in the west and an increasing stratification eastwards.Cyanobacteria (mostly Synechococcus) dominated at low chlorophylla (Chl a) concentration whereas both the total and relativeabundance of picoeukaryotes generally increased with total phytoplanktonbiomass. Differences in the cell size of most FC-defined picoplanktonicgroups were also observed along the longitudinal and coastal–offshoregradients. The presence of Prochlorococcus (<10³ cells mL^–1)coincided with the core of the PCCC and its significant correlationwith salinity suggests its possible use as a tracer of thiscurrent. Two groups of heterotrophic bacteria were distinguishedaccording to their relative DNA content. High DNA bacteria dominatedthe community (60 ± 1% SE of total numbers), reachingmaximum values in areas under riverine influence with presumedhigher inputs of organic matter. Picoplankton biomass was dominatedby heterotrophic bacteria in the western region (58 ±3%) while autotrophic groups contributed on average 66 ±2% in the southern Bay of Biscay. The heterotrophic bacteriato phytoplankton biomass ratio decreased significantly alongthe measured range. Yet showing regional differences, the estimatedcontribution of picophytoplankton to total algal biomass washigh (mean 59 ± 4%), indicating the important role ofsmall cells at the onset of the spring bloom in these temperateshelf waters.     

A Role for Toll-like Receptor 3 Variants in Host Susceptibility to Enteroviral Myocarditis and Dilated Cardiomyopathy

The innate antiviral response is mediated, at least in part, by Toll-like receptors (TLRs). TLR3 signaling is activated in response to viral infection, and the absence of TLR3 in mice significantly increases mortality after infection with enteroviruses that cause myocarditis and/or dilated cardiomyopathy. We screened TLR3 in patients diagnosed with enteroviral myocarditis/cardiomyopathy and identified a rare variant in one patient as well as a significantly increased occurrence of a common polymorphism compared with controls. Expression of either variant resulted in significantly reduced TLR3-mediated signaling after stimulation with synthetic double-stranded RNA. Furthermore, Coxsackievirus B3 infection of cell lines expressing mutated TLR3 abrogated activation of the type I interferon pathway, leading to increased viral replication. TLR3-mediated type I interferon signaling required cellular autophagy and was suppressed by 3-methyladenine and bafilomycin A1, by inhibitors of lysosomal proteolysis, and by reduced expression of Beclin 1, Atg5, or microtubule-associated protein 1 light chain 3β (MAP1LC3β). However, TLR3-mediated signaling was restored upon exogenous expression of Beclin 1 or a variant MAP1LC3β fusion protein refractory to RNA interference. These data suggest that individuals harboring these variants may have a blunted innate immune response to enteroviral infection, leading to reduced viral clearance and an increased risk of cardiac pathology.     

Strategies for farmers and policy makers to control nitro-gen losses whilst maintaining crop production

The nitrogen (N) cycle is essentially 'leaky'. The losses of small amounts of nitrate to waters and of ammonia and nitrous oxide to the atmosphere are a part of the global biogeo-chemical N cycle. However, intensive agricultural production, industry and vehicle use have more than doubled the amount of 'reactive' N in the environment, resulting in eutrophication, ecosystem change and health concerns. Research has identified agricultural practices that cause large losses of N and, in some cases, developed solutions. This paper discusses the problems of maintaining productivity while reducing N losses, compares conventional with low input (integrated) and organic farming systems, and discusses wider options. It also looks at the need to integrate studies on N with other environmental impacts, set in the context of the whole farm system, to provide truly sustainable agricultural systems.     

Length‐weight relationship for sea catfishes (Siluriformes: Ariidae) from the southeastern Gulf of California with new records on maximum length

The parameters of length‐weight relationship (LWR) are presented for seven species of catfish from the southeastern Gulf of California. Samples were obtained every three months, in Bahia de Matanchen (using bottom trawl nets consistent of 72 hauls, with mesh sizes of 3.2 cm in the wings and 2.54 cm in the cod‐end) from February to November, 2016 and in the San Blas estuarine system (using gill nets consistent of 32 hauls, with mesh sizes of 5 cm) from August, 2015 to May, 2016 respectively. The allometric coefficient (b) of LWR varied from 2.797 for the Cominate Sea Catfish (Occidentarius platypogon (Günther, 1864)) to 3.373 for the Tete Sea Catfish (Ariopsis gilberti (Jordan & Williams, 1895)). Four species reached new records on maximum total length (Tete Sea Catfish, A. gilberti; Widehead Sea Catfish, A. guatemalensis (Günther, 1864); Conguito Sea Catfish, Cathorops liropus (Bristol, 1897); and Curator Sea Catfish, C. raredonae Marceniuk, Betancur‐R, & Acero, 2009). For six of these species this accounts for the first report on estimations of LWR parameters.     

Consequences of dispersal limitation and habitat fragmentation for the Brazilian heart‐tongued frogs (Phyllodytes spp.)

Poorly known species may be cryptically endangered, especially when they inhabit fragmented and threatened habitats. Heart‐tongued frogs (genus Phyllodytes, family Hylidae, Lophyohylinae) comprise 17 species of poorly known frogs that have obligatory associations with tank bromeliads. The distributions of all species are restricted to a small, extremely fragmented, region of Atlantic Forest in eastern Brazil. We model climate and tank bromeliad distributions to better understand frog distribution limits. Using records from several sources for frogs and bromeliads with climate data from WorldClim, we modelled the distribution of Phyllodytes using maximum entropy. We compared climate and altitude within the distribution and nearby to test how climate may limit distribution. Climate together with bromeliad distributions provided the best model and predicted the smallest suitable area for Phyllodytes that was larger than that occupied, from the state of Paraíba in the north to Rio Grande do Sul in the south. Phyllodytes occurs in lower elevations that are warmer, wetter and less variable than the surrounding regions where it does not occur, and dispersal is apparently limited by the surrounding, inhospitable, region. Dispersal limitation and habitat fragmentation have relegated Phyllodytes to many very small habitat fragments. With many species in this genus being known from a single or few samples, this unfortunate combination of limitation and fragmentation suggests that some or all species of Phyllodytes may be threatened with extinction, especially if habitat fragmentation continues at its present pace in eastern Brazil.     

Skin unhairing proteases of Bacillus subtilis: production andpartial characterization

Proteases able to unhair sheep skins were produced from Bacillus subtilis. Protease activity was increased from 640 to 990 U/mL by using a fed-batch culture with glucose added sequentially up to 10 g/L. The crude enzyme prep-aration was mainly a mixture of metallo- and serine-proteases with optimal pH and temperature for protease activity at 7 and 50-55°C, respectively. At pH 8 and 30°C, protease activity of the crude enzyme was 33% of the maximal value and 97% of the original activity (900 U/mL) was retained after incubation for 4 hours.     

Contribution of heterotrophic plankton to nitrogen regeneration in the upwelling ecosystem of A Coruna (NW Spain)

The contribution of heterotrophic plankton to nitrogen (N) regenerationin the water column, and its significance for the requirementsof phytoplankton, were studied at the seasonal scale in thecoastal upwelling ecosystem of A Coruña (Galicia, NWSpain). During 1995–1997, monthly measurements were takenof hydrographic conditions, dissolved nutrients, and abundanceand biomass of microplanktonic heterotrophs (bacteria, flagellatesand ciliates), phytoplankton and mesozooplankton (>200 µm).Additionally, series of experiments were conducted to quantifyN fluxes, including primary production (¹⁴C method), phytoplanktonuptake of nitrate, ammonium and urea (¹⁵N-labelling techniques),microheterotrophic regeneration of ammonium, mesozooplanktongrazing (chlorophyll gut-content method) and excretion of ammoniumby mesozooplankton. Two N budgets were built for the averagesituations of high (>100 mg C m^-2 h^-1) and low (<100 mgC m^-2 h^-1) primary production. The results revealed that phytoplanktonrelied strongly on regenerated ammonium all year round (33 and43% of total N uptake in high and low production situations,respectively). This demand for ammonium was closely matchedby regeneration rates of microplankton (0.14–0.25 mmolN m^-2 h^-1), whereas zooplankton contributed on average <10%to N regeneration. Likewise, zooplankton grazing had littledirect control on phytoplanktonic biomass. The results obtainedindicate that in the A Coruña upwelling system, N biomassof heterotrophic plankton is generally higher than phytoplanktonN biomass. The high rates of N regeneration measured also suggestthat a large proportion of the organic matter produced afteran upwelling pulse is recycled in the water column through themicrobial food web.     

β-Elimination in aldonolactones. Synthesis of 3,6-dideoxy L-arabino-hexose (ascarylose)

Benzoylation of L-rhamnono-1,5-lactone (1) with an excess of benzoyl chloride and pyridine for 16 h afforded 2,4-O-benzoyl-3,6-dideoxy-L-erythro-hex-2-enono-1,5-lactone (2). Catalytic hydrogenation of 2 was stereoselective and gave crystalline 2,4-di-O-benzoyl-3,6-dideoxy-L-arabino-hexono-1,5-lactone (3). Reduction of the lactone 3 with disiamylborane afforded 2,4-di-O-benzoyl-3,6-dideoxy-L-arabino-hexopyranose (4) which, on debenzoylation, gave 3,6-dideoxy-L-arabino-hexose (ascarylose) (7) in good overall yield. The sugar was identified as the corresponding alditol (ascarylitol) and by convertion into methyl 3,6-dideoxy-α-L-arabino-hexopyranoside (methyl ascaryloside, 6).