Delineating the fishes of the Clinus superciliosus species complex in southern African waters (Blennioidei: Clinidae: Clinini), with the validation of Clinus arborescens Gilchrist & Thompson, 1908 and Clinus ornatus Gilchrist & Thompson, 1908, and with descriptions of two new species

The Clinus superciliosus complex comprises six closely related species. Three of the species were originally recognized by Gilchrist and Thompson as two distinct species, Clinus superciliosus (Linnaeus, 1758) and Clinus ornatus Gilchrist & Thompson, 1908, and a variety, Clinus superciliosus var. arborescens Gilchrist & Thompson, 1908. A number of other authors described various similar species, which subsequently were all synonymized with Clinus superciliosus. A further species, Clinus spatulatus Bennett, 1983, an obligate estuarine dweller, is known only from the Bot, Kleinmond, and Klein river estuaries in the Western Cape, South Africa. Two further species, Clinus musaicus sp. nov. (discovered while searching for C. ornatus specimens) and Clinus exasperatus sp. nov. , are herein described: the first is currently known from False Bay and the west coast of the Cape Peninsula, whereas the second species is known from only two specimens just east of False Bay. Clinus ornatus and Clinus arborescens Gilchrist & Thompson, 1908 are recognized as a valid species, and can be distinguished from C. superciliosus and C. spatulatus on the basis of meristic values, form of the orbital cirrus, position of the dorsal‐fin crest, taste bud number and pattern, diet, and coloration. All extant types of C. superciliosus are examined as specimens, or photographs and radiographs, and their validity and identification are assessed. Genetic analysis of mitochondrial and nuclear DNA supports species differentiation. A key is provided for the species complex. Furthermore, the variable coloration of four of the species, probably related to the substrate the larvae settle upon, and the increase in the number of vertebrae, and fin‐ray and spine number, with decreasing water temperature is discussed. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society 2012, 166 , 827–853.     

Habitat Fragmentation and the Persistence of Lynx Populations in Washington State

Abstract Lynx (Lynx canadensis) occur in the northern counties of Washington state, USA; however, current distribution and status of lynx in Washington is poorly understood. During winters 2002–2004 we snow-tracked lynx for 155 km within a 211-km² area in northern Washington, to develop a model of lynx-habitat relationships that we could use to assess their potential distribution and status in the state. We recorded movements and behaviors of lynx with a Global Positioning System and overlaid digitized lynx trails on various habitat layers using a Geographic Information System. Based on univariate analyses, lynx preferred Engelmann spruce (Picea engelmannii) and subalpine fir (Abies lasiocarpa) forests, with moderate canopy and understory cover, and elevations ranging from 1,525 m to 1,829 m but avoided Douglas-fir (Pseudotsuga menziesii) and ponderosa pine (Pinus ponderosa) forests, openings, recent burns, open canopy and understory cover, and steep slopes. A map of suitable lynx habitat based on a logistic regression model built using these candidate variables revealed that habitats at elevations >1,400 m where lynx historically occurred in Washington are intersected and fragmented by landscape features and forest conditions that are generally avoided by lynx. Our habitat suitability map predicts 3,800 km² of lynx habitat in Washington that could support 87 lynx, far fewer than previous estimates. Since 1985, natural fires have burned >1,000 km² of forested habitat in Okanogan County, the only region in Washington where lynx occurrence has been documented during that period. Loss of suitable habitat from natural and human-caused disturbances, and the lack of verifiable evidence of lynx occurrence in historic lynx range, suggests that fragmented landscape conditions may have impeded recolonization of these areas by lynx. Consequently, translocations may be necessary to ensure lynx persistence in Washington. We suggest that managers assess the potential for translocation by first identifying the scale and distribution of potential foraging habitats for lynx based on our or similar habitat models, survey various habitat conditions to obtain reliable estimates of snowshoe hare densities, and identify a genetically compatible source population of lynx. If habitat and source populations are adequate, reintroducing lynx to areas of their historic range may be an appropriate conservation strategy.     

TECHNICAL ADVANCES: A microarray for large-scale genomic and transcriptional analyses of the zebra finch (Taeniopygia guttata) and other passerines

The microarray technology has revolutionized biological research in the last decade. By monitoring the expression of many genes simultaneously, microarrays can elucidate gene function, as well as scan entire genomes for candidate genes encoding complex traits. However, because of high costs of sequencing and design, microarrays have largely been restricted to a few model species. Cross-species microarray (CSM) analyses, where microarrays are used for other species than the one they were designed for, have had varied success. We have conducted a CSM analysis by hybridizing genomic DNA from the common whitethroat (Sylvia communis) on a newly developed Affymetrix array designed for the zebra finch (Taeniopygia guttata), the Lund-zf array. The results indicate a very high potential for the zebra finch array to act as a CSM utility in other passerine birds. When hybridizing zebra finch genomic DNA, 98% of the gene representatives had higher signal intensities than the background cut-off, and for the common whitethroat, we found the equivalent proportion to be as high as 96%. This was surprising given the fact that finches and warblers diverged 25-50 million years ago, but may be explained by a relatively low sequence divergence between passerines (89-93%). Passerine birds are widely used in studies of ecology and evolution, and a zebra finch array that can be used for many species may have a large impact on future research directions.     

C4 photosynthesis in a single C3 cell is theoretically inefficient but may ameliorate internal CO2 diffusion limitations of C3 leaves

Attempts are being made to introduce C₄ photosynthetic characteristics into C₃ crop plants by genetic manipulation. This research has focused on engineering single‐celled C₄‐type CO₂ concentrating mechanisms into C₃ plants such as rice. Herein the pros and cons of such approaches are discussed with a focus on CO₂ diffusion, utilizing a mathematical model of single‐cell C₄ photosynthesis. It is shown that a high bundle sheath resistance to CO₂ diffusion is an essential feature of energy‐efficient C₄ photosynthesis. The large chloroplast surface area appressed to the intercellular airspace in C₃ leaves generates low internal resistance to CO₂ diffusion, thereby limiting the energy efficiency of a single‐cell C₄ concentrating mechanism, which relies on concentrating CO₂ within chloroplasts of C₃ leaves. Nevertheless the model demonstrates that the drop in CO₂ partial pressure, pCO₂, that exists between intercellular airspace and chloroplasts in C₃ leaves at high photosynthetic rates, can be reversed under high irradiance when energy is not limiting. The model shows that this is particularly effective at lower intercellular pCO₂. Such a system may therefore be of benefit in water‐limited conditions when stomata are closed and low intercellular pCO₂ increases photorespiration.     

Reproductive structures and systematics of Buxaceae

Buxaceae belong to a grade of families near the base of eudicots. Flowers of these families are characterized by a variable number and arrangement of floral organs. In this study, the anthetic structure of the gynoecium and androecium of representatives of all genera of Buxaceae were comparatively studied, and observations on the flowering processes and pollination biology were made. Styloceras and Notobuxus were studied in detail for the first time. Various features of the morphological analysis support our earlier molecular phylogenetic study. Shared reproductive characters among Sarcococca , Pachysandra and Styloceras are the occurrence of two (rarely three) carpels, the lack of interstylar nectaries, a micropyle formed by both integuments, attractive stamens in male flowers, and fleshy fruits. In addition, Styloceras and Pachysandra share a secondary partition in the ovary. Notobuxus does not seem to be clearly distinct from Buxus . Both have a similar inflorescence and perianth structure; female flowers have three carpels, interstylar nectaries, micropyles formed by the inner integument, rudimentary arils, and they develop into capsular fruits; in male flowers stamens are sessile and the central pistillode is lacking in some species. Thus, it is questionable to justify a separation of Buxus and Notobuxus at genus level. The results further strongly support the placement of Buxaceae among basal eudicots.  © The Linnean Society of London, Botanical Journal of the Linnean Society , 2002, 140 , 193–228.     

The Influence of Auxin and Cytokinin on Proliferation and Morphology of Somatic Embryos of Picea abies (L.) Karst

Embryogenic cell-lines of Picea abies were initiated from maturezygotic embryos and cultured on medium containing 2,4-D andBA The cell-lines were categorized into two main groups (solar/polarand undeveloped embryos), based on the morphology of the somaticembryos and their ability to go through a maturation processwhen treated with ABA The cell-lines were transferred to mediacontaining (1) 2,4-D and BA, (2) only BA, (3) only 2,4-D or(4) no growth regulators When cultured on a medium containingboth 2,4-D and BA new somatic embryos were continually formedIn contrast, when they were cultured without one or both ofthe growth regulators no new somatic embryos were formed Solar/polarand undeveloped embryos responded in the same way On a mediumcontaining only BA the somatic embryos already present increasedin size and developed an extremely large embryonic region Ona medium containing only 2,4-D the embryos already present becamedisorganized into loose aggregates When transferred from a mediumcontaining both 2,4-D and BA to one containing ABA, mature somaticembryos developed from the solar/polar type but not from theundeveloped type The ability of the solar/polar somatic embryosto go through a maturation process decreased when they wereprecultured on a medium lacking auxin and was lost when theywere precultured on medium lacking cytokinin The cell-linescontaining undeveloped somatic embryos produced mature somaticembryos in one cell-line out of three that had been culturedon the medium containing only BA Auxin, cytokinin, embryogenic cultures, Norway spruce, somatic embryos, Picea abies (L.) Karst