Association of interacting genes in the toll-like receptor signaling pathway and the antibody response to pertussis vaccination

Background

Activation of the Toll-like receptor (TLR) signaling pathway through TLR4 may be important in the induction of protective immunity against Bordetella pertussis with TLR4-mediated activation of dendritic and B cells, induction of cytokine expression, and reversal of tolerance as crucial steps. We examined whether single nucleotide polymorphisms (SNPs) in genes of the TLR4 pathway and their interaction are associated with the response to whole-cell vaccine (WCV) pertussis vaccination in 490 one-year-old children.

Methodology/Principal Findings

We analyzed associations of 75 haplotype-tagging SNPs in genes in the TLR4 signaling pathway with pertussis toxin (PT)-IgG titers. We found significant associations between the PT-IgG titer and SNPs in CD14, TLR4, TOLLIP, TIRAP, IRAK3, IRAK4, TICAM1, and TNFRSF4 in one or more of the analyses. The strongest evidence for association was found for two SNPs (rs5744034 and rs5743894) in TOLLIP that were almost completely in linkage disequilibrium, provided statistically significant associations in all tests with the lowest p-values, and displayed a dominant mode of inheritance. However, none of these single gene associations would withstand correction for multiple testing. In addition, Multifactor Dimensionality Reduction Analysis, an approach that does not need correction for multiple testing, showed significant and strong two and three locus interactions between SNPs in TOLLIP (rs4963060), TLR4 (rs6478317) and IRAK1 (rs1059703).

Conclusions/Significance

We have identified significant interactions between genes in the TLR pathway in the induction of vaccine-induced immunity. These interactions underline that these genes are functionally related and together form a true biological relationship in a protein-protein interaction network. Practically all our findings may be explained by genetic variation in directly or indirectly interacting proteins at the extra- and intracytoplasmic sites of the cell membrane of antigen-presenting cells, B cells, or both. Fine tuning of interacting proteins in the TLR pathway appears important for the induction of an optimal vaccine response.     

Left Ventricular Dysfunction and CXCR3 Ligands in Hypertension: From Animal Experiments to a Population-Based Pilot Study

Detecting left ventricular (LV) dysfunction at an early stage is key in addressing the heart failure epidemic. In proteome profiling experiments in mice subjected either to aortic banding or sham, the circulating CXCR3 ligands monokine induced by interferon-γ (MIG) and interferon-γ inducible protein 10 (IP10) were 5 to 40 fold up-regulated at eight weeks. We assessed the diagnostic value of circulating NT-pro BNP and CXCR3 ligands (MIG, IP10, Interferon-inducible T-cell alpha chemo-attractant [I–TAC]) in patients with hypertension (≥140/90 mm Hg) associated with subclinical (n = 19) or symptomatic (n = 16) diastolic LV dysfunction on echocardiography and healthy controls. NT–pro BNP, MIG, IP10, I–TAC all increased (p ≤ 0.014) across the categories of worsening left ventricular dysfunction. In patients with symptomatic disease, MIG, IP10, and I–TAC increased 210% (p = 0.015), 140% (p = 0.007) and 120% (p = 0.035) more than NT-pro BNP. The optimal discrimination limits, obtained by maximizing Youden’s index were 246 pmol/L, 65 pg/mL, 93 pg/mL, and 24 pg/mL, respectively. The odds ratios associated with the four biomarkers were significant (p ≤ 0.010), ranging from 4.00 for IP10 to 9.69 for MIG. With adjustment for NT–pro BNP, the CXCR3 ligands retained significance (p ≤ 0.028). Adding optimized thresholds for the CXCR3 ligands to NT–pro BNP enhanced (p ≤ 0.014) the integrated discrimination improvement and the net reclassification improvement. In conclusion, congruent with the concept that inflammation plays a key role in the pathogenesis of LV dysfunction, MIG, IP10 and I–TAC add diagnostic accuracy over and beyond NT–pro BNP.     

Anaphylactic reactions to cinoxacin.

During 1981 to mid-1988 three cases of anaphylactic shock after treatment with the quinolone derivative cinoxacin were reviewed by the Netherlands Centre for Monitoring of Adverse Reactions to Drugs and 17 cases of an anaphylactic type of reaction notified to the World Health Organisation Collaborating Centre for International Drug Monitoring. In five out of six patients for whom data were available the reaction began shortly after taking a single capsule of a second or next course of treatment. Cinoxacin is related to nalidixic acid, and one patient previously treated with that agent subsequently had an anaphylactoid reaction to cinoxacin and later developed a skin reaction to nalidixic acid. There were no deaths, and patients treated as an emergency with plasma expanders or with adrenaline and corticosteroids generally recovered promptly and uneventfully. In view of the potentially fatal consequences of anaphylactic reactions to cinoxacin and other quinolones doctors should take care when prescribing these drugs.     

Microbial community of predatory bugs of the genus <Emphasis Type="Italic">Macrolophus</Emphasis>(Hemiptera: Miridae)

BACKGROUND: The predatory mirids of the genus Macrolophus are key natural enemies of various economically important agricultural pests. Both M. caliginosus and M. pygmaeus are commercially available for the augmentative biological control of arthropod pests in European greenhouses. The latter species is known to be infected with Wolbachia -inducing cytoplasmic incompatibility in its host- but the presence of other endosymbionts has not been demonstrated. In the present study, the microbial diversity was examined in various populations of M. caliginosus and M. pygmaeus by 16S rRNA sequencing and denaturing gradient gel electrophoresis. RESULTS: Besides Wolbachia, a co-infection of 2 Rickettsia species was detected in all M. pygmaeus populations. Based on a concatenated alignment of the 16S rRNA gene, the gltA gene and the coxA gene, the first is phylogenetically related to Rickettsia bellii, whereas the other is closely related to Rickettsia limoniae. All M. caliginosus populations were infected with the same Wolbachia and limoniae-like Rickettsia strain as M. pygmaeus, but did not harbour the bellii-like Rickettsia strain. Interestingly, individuals with a single infection were not found. A PCR assay on the ovaries of M. pygmaeus and M. caliginosus indicated that all endosymbionts are vertically transmitted. The presence of Wolbachia and Rickettsia in oocytes was confirmed by a fluorescence in situ hybridisation. A bio-assay comparing an infected and an uninfected M. pygmaeus population suggested that the endosymbionts had minor effects on nymphal development of their insect host and did not influence its fecundity. CONCLUSION: Two species of the palaearctic mirid genus Macrolophus are infected with multiple endosymbionts, including Wolbachia and Rickettsia. Independent of the origin, all tested populations of both M. pygmaeus and M. caliginosus were infected with three and two endosymbionts, respectively. There was no indication that infection with endosymbiotic bacteria had a fitness cost in terms of development and fecundity of the predators.     

Is low pathogenic avian influenza virus virulent for wild waterbirds?

Although low pathogenic avian influenza virus (LPAIV) is traditionally considered to have adapted to its wild waterbird host to become avirulent, recent studies have suggested that LPAIV infection might after all have clinical effects. Therefore, I reviewed the literature on LPAIV infections in wild waterbirds. The virulence of LPAIV was assessed in 17 studies on experimental infections and nine studies on natural infections. Reported evidence for virulence were reductions in return rate, feeding rate, body weight, long-range movement and reproductive success, as well as pathological changes in infected organs. However, major caveats in studies of experimental infections were unnatural route of LPAIV inoculation, animal husbandry not simulating natural stressors and low sensitivity of clinical assessment. Major caveats in studies of natural infections were incomplete measurement of LPAIV infection burden, quasi-experimental design and potential misclassification of birds. After taking these caveats into account, the only remaining evidence for virulence was that presence and intensity of LPAIV infection were negatively correlated with body weight. Based on this correlation, together with the demonstrated LPAIV tropism for the intestinal tract, I hypothesize that LPAIV reduces digestive tract function, and suggest how future studies could be directed to test this hypothesis.     

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis

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Photosynthetic responses of Coffea arabica leaves to a short-term high light exposure in relation to N availability

It is known that the coffee (Coffea arabica L.) plant which is originally from shade habitats would have a limited ability to grow under full sun. Previous work has shown that nitrogen fertilisation can reduce the leaf damage when the plants are exposed to high light intensities during several days. In the present work we aimed to study the effects of the high irradiance during the first hours and evaluate the positive contribution of nitrogen fertilisation in the case of short-term exposure to strong light. Young plants (1.5–2 years old) grown in 1.5 kg of a mixed soil were supplemented with a nutrient solution containing 15 mM nitrogen in the form of NH₄NO₃, every 7 days (2N treatment), 15 days (1N treatment) and 45 days (0N treatment). Top mature leaves were exposed to a photosynthetic photon flux density of 1 500 μmol m^?2 s^?1 for a maximal period of 8 h, and changes in photosynthesis and pigment composition were monitored along the period of high light exposure. Photosynthetic capacity, leaf conductance to water vapour, electron transport capacity and maximum carboxylation activity, as well as some leaf fluorescence parameters (minimal fluorescence, photochemical efficiency of PSII and quantum yield of photosynthetic electron transport) were reduced by the stress, with a generally stronger impact observed in the 0N plants. The photochemical quenching was affected only in the 0N plants, while the non-photochemical quenching increased in 2N plants but decreased in the 0N ones. The results showed that 2N plants presented a better initial status of the photosynthetic parameters and of the content of photoprotective pigments. Those plants showed ability to trigger some protective mechanisms, as observed by the tendency to increase the xanthophyll pool content, specially in zeaxanthin and in non-photochemical quenching. Also, protein content presented a tendency to increase after 1.5 h, which was maintained until the end of the high light period. We conclude that nitrogen availability is a key factor in the acclimation process to high light.     

A new,high‐precision CA‐ID‐TIMS date for the ‘Kalkberg’ K‐bentonite (Judds Falls Bentonite)

The numerical calibration of the base of the Devonian is poorly constrained due to several factors. Few precise radioisotopic age determinations are available from the late Silurian and Early Devonian, and the limited published data carry large error bars from older analytical methodologies. Volcanic ashfalls suitable for dating occur in the Lower Devonian of the Appalachian Basin, but have not been precisely correlated into the global chronostratigraphical scheme because of limited bio‐ and lithostratigraphical information. Here, we report a new U‐Pb zircon radioisotopic age determination of 417.61 ± 0.12(0.23)[0.50] Ma and improved chronostratigraphical context, including revised biostratigraphy, for an ash bed in the New Scotland Formation, Helderberg Group, from the Lochkovian Stage that was previously identified as the Kalkberg K‐bentonite. This new information helps to integrate the classic New York Appalachian Basin succession into global Siluro‐Devonian stratigraphy, refine the calibration of the Silurian–Devonian boundary and more precisely estimate the duration of both time periods.     

Breeding ecology of the endemic Black Lark <Emphasis Type="Italic">Melanocorypha yeltoniensis</Emphasis> on natural steppe and abandoned croplands in post-Soviet Kazakhstan

Since the collapse of the Soviet Union in 1991, the abundance and distribution of many central Asian steppe birds have been affected by changes in agricultural land management, such as the abandonment of large areas of cropland and changing grazing patterns. However, the underlying population processes that drive patterns of abundance and distribution are poorly understood. We compared the population ecology of the Black Lark Melanocorypha yeltoniensis on natural steppe and abandoned cropland. Between 2009 and 2013, we used distance sampling to quantify Black Lark population density, monitored 220 nests to assess reproductive performance, and modelled habitat selection at several scales. Arthropod food availability was compared using pitfall traps. Mean population densities were three times higher on abandoned cropland compared to those in steppe, and varied with time since abandonment. Nest survival rates were significantly lower on abandoned cropland compared to steppe, probably due to higher predation pressure. Chick growth rates were also lower on abandoned cropland, despite higher insect availability in this habitat. Habitat selection was strongly influenced by grazing intensity and vegetation structure. We suggest that Black Larks are generally attracted to abandoned cropland because of its suitable vegetation structure and higher food availability. The results of a fecundity model suggested that the number of breeding attempts on abandoned cropland necessary to produce the same number of fledglings as one nesting attempt in steppe habitat was 2.04 in 2011 and 3.62 in 2013. However, a phenological analysis revealed that there were only two peaks in first egg dates, making more than two re-nesting attempts per year unlikely. Therefore, abandoned cropland could, at least in some years, be an ecological trap for the species. Our results illustrate that the effects of land-use change on animal populations should not only be assessed using species densities, but also incorporate detailed demographic analyses. If current densities in steppe habitat corresponded to maximum carrying capacity, overall population densities of Black Larks are likely to decline in the near future as availability of abandoned cropland as nesting habitat is currently decreasing.