Selective structural change of bulged-out region of double-stranded RNA containing bulged nucleotides by spermidine

Polyamines are essential for cell growth due to effects mainly at the level of translation. These effects likely involve a structural change, induced by polyamines, of the bulged-out region of double-stranded RNA that is different from changes induced by Mg²⁺. Structural changes were studied using U6-34, a model RNA of U6 small nuclear RNA containing bulged nucleotides. Binding of NS1-2 peptide derived from the RNA binding site of NS1 protein, to U6-34 was inhibited by spermidine but not by Mg²⁺. A selective conformational change of the bases in the bulged-out region of U6-34 induced by spermidine was observed by NMR. The selective effect of spermidine was lost when the bulged-out region of U6-34 was removed in U6-34(Δ5). The binding of NS1-2 peptide to U6-34(Δ5) was inhibited both by spermidine and Mg²⁺. The selective structural change of U6-34 by spermidine was confirmed by circular dichroism.     

Disuse-induced preferential loss of the giant protein titin depresses muscle performance via abnormal sarcomeric organization

Persistent muscle weakness due to disuse-associated skeletal muscle atrophy limits the quality of life for patients with various diseases and individuals who are confined to bed. Fibers from disused muscle exhibit a marked reduction in active force production, which can exacerbate motor function, coupled with the well-known loss of muscle quantity. Despite recent understanding of the signaling pathways leading to the quantity loss, the molecular mechanisms of the depressed qualitative performance still remain elusive. Here we show that long-term disuse causes preferential loss of the giant sarcomere protein titin, associated with changes in physiologic muscle function. Ca(2+) sensitivity of active force decreased following 6 wk of hindlimb immobilization in the soleus muscle of the rat, accompanied by a shift in the length-active force relationship to the shorter length side. Our analyses revealed marked changes in the disused sarcomere, with shortening of thick and thin filaments responsible for altered length dependence and expansion of interfilament lattice spacing leading to a reduction in Ca(2+) sensitivity. These results provide a novel view that disuse-induced preferential titin loss results in altered muscle function via abnormal sarcomeric organization.     

Troponin and titin coordinately regulate length-dependent activation in skinned porcine ventricular muscle

We investigated the molecular mechanism by which troponin (Tn) regulates the Frank-Starling mechanism of the heart. Quasi-complete reconstitution of thin filaments with rabbit fast skeletal Tn (sTn) attenuated length-dependent activation in skinned porcine left ventricular muscle, to a magnitude similar to that observed in rabbit fast skeletal muscle. The rate of force redevelopment increased upon sTn reconstitution at submaximal levels, coupled with an increase in Ca2+ sensitivity of force, suggesting the acceleration of cross-bridge formation and, accordingly, a reduction in the fraction of resting cross-bridges that can potentially produce additional active force. An increase in titin-based passive force, induced by manipulating the prehistory of stretch, enhanced length-dependent activation, in both control and sTn-reconstituted muscles. Furthermore, reconstitution of rabbit fast skeletal muscle with porcine left ventricular Tn enhanced length-dependent activation, accompanied by a decrease in Ca2+ sensitivity of force. These findings demonstrate that Tn plays an important role in the Frank-Starling mechanism of the heart via on-off switching of the thin filament state, in concert with titin-based regulation.     

Species-specific use of allochthonous resources by ground beetles (Carabidae) at a river–land interface

A variety of organisms mediate river–terrestrial linkages through spatial subsidies. However, most empirical studies have classified organisms rather broadly (e.g., by functional group or taxonomic family) and have dismissed species-level linkages at the interface of ecosystems. Here, we show how allochthonous resource use varies among taxonomically similar species of ground beetles (family Carabidae) across seasons (June–September). We investigated seasonal shifts in the distribution of five beetle species and their dietary responses to spatial subsidies (emerging aquatic insects) in a Japanese braided river. Despite their taxonomic closeness, the ground beetles showed species-specific responses to spatial subsidies, and beetle distribution patterns tended to coincide with their diets. Overall, 1–56% of ground beetle diets were derived from aquatic prey. One genus (Bembidion spp.) mainly consumed aquatic prey, while three species fed primarily on terrestrial prey across all seasons. However, one species (Lithochlaenius noguchii) showed shifts in its diet from aquatic to terrestrial prey according to subsidy availability. The observed variation in allochthonous resource use was likely related to species-specific foraging modes, physiological tolerance to dry conditions, and interspecific competition. Our findings suggest that considering species-specific interactions is necessary to fully understand cross-system interactions and recipient food-web dynamics.     

Combined effects of immigration potential and habitat quality on diadromous fishes

In river systems, considerable debate exists as to why small-scale conservation with a primary focus on habitat quality brings little improvement to biological communities. To reveal potential causes of the enigmatic consequences, further explorations should focus on how species’ response to local environments is determined within a watershed. Here, we examined how immigration potential influences habitat associations of four diadromous fishes in the Shubuto River system in Hokkaido, Japan: sculpins (Cottus sp. ME and C. hangiongensis), gobies (Gymnogobius opperiens) and sea lamprey larvae (Lethenteron japonicum). We used closeness to the sea (i.e., distance from the sea) as a proxy for immigration potential, since the source of immigrants of the diadromous fishes is the river mouth. A multilevel modeling approach revealed that immigration potential had a “bottom-up effect” on local habitat–abundance relationships (current velocity and substrate coarseness), but habitat preferences did not vary along the gradient of immigration potential. This likely reflects the limited dispersal capabilities of the study species, whereby shorter travel distances may greatly enhance colonization success. Our study raises the possibility that the effectiveness of small-scale riverine conservation can be improved by selecting areas where successful colonization would be expected. Explicitly incorporating this consideration into conservation decision-making would help achieve greater success in environmental restoration and preservation actions.     

NMR investigation of the heme electronic structure in deoxymyoglobin possessing a fluorinated heme

The heme electronic structures of deoxymyoglobins (deoxy-Mbs) reconstituted with 13,17-bis(2-carboxylatoethyl)-3,8-diethyl-2,12,18-trimethyl-7-(trifluoromethyl)porphyrinatoiron(III) (7-PF), 13,17-bis(2-carboxylatoethyl)-3,7-difluoro-2,8,12,18-tetramethylporphyrinatoiron(III) (3,7-DF), and 13,17-bis(2-carboxylatoethyl)-3,8-diethyl-2-fluoro-7,12,18-trimethylporphyrinatoiron(III) (2-MF) have been characterized by ¹H and ¹⁹F NMR. The analysis of heme methyl proton shift patterns of the hemes in their bis-cyano forms demonstrated that, owing to the substitution of a strongly electron-withdrawing perfluoromethyl group, CF₃, to porphyrin, the porphyrin -system of 7-PF is more significantly distorted from four-fold symmetry than those of the ring-fluorinated hemes, 3,7-DF and 2-MF. The presence of the heme orientation disorder resulted in the observation of the two well-resolved ¹⁹F signals in the spectra of deoxy-Mbs possessing 7-PF and 2-MF. The ¹⁹F signals of deoxy-Mb possessing 7-PF exhibited a relatively large difference in paramagnetic shift (~30 ppm), despite their small paramagnetic shifts (~30 ppm), supporting the significant contribution of a spin delocalization mechanism in this Mb due to the d-electron configuration derived from the ⁵E ground state. On the other hand, ¹⁹F signals of deoxy-Mbs with 3,7-DF as well as 2-MF exhibited large paramagnetic shifts (~250 ppm) with a relatively small difference in the paramagnetic shift (~20 ppm), indicating the predominant contribution of spin delocalization, due to a d-electron configuration derived from the ⁵B₂ ground state. These results demonstrate for the first time that the relative contributions of the orbital ground states derived from ⁵E and ⁵B₂ states to the heme electronic structure in deoxy-Mb are affected by the distortion of the porphyrin -system exerted by chemical properties of the heme peripheral side-chains.Abbreviations 3,7-DF 13,17-bis(2-carboxylatoethyl)-3,7-difluoro-2,8,12,18-tetramethylporphyrinatoiron(III) - 2-MF 13,17-bis(2-carboxylatoethyl)-3,8-diethyl-2-fluoro-7,12,18-trimethylporphyrinatoiron(III) - 7-PF 13,17-bis(2-carboxylatoethyl)-3,8-diethyl-2,12,18-trimethyl-7-(trifluoromethyl)porphyrinatoiron(III) - Mb myoglobin - Mb(7-PF) deoxy-Mb reconstituted with 7-PF - Mb(3,7-DF) deoxy-Mb reconstituted with 3,7-DF - Mb(2-MF) deoxy-Mb reconstituted with 2-MF - NOE nuclear Overhauser effect - NOESY nuclear Overhauser effect correlated spectroscopy     

Accelerated clearance of Escherichia coli in experimental peritonitis of histamine-deficient mice

IL-5 plays a pivotal role in growth and differentiation of eosinophils. The signal transduction mechanism of IL-5Ralpha is largely unknown. We have demonstrated that IL-5 induces tyrosine phosphorylation of IL-5Ralpha in eosinophils. To identify IL-5Ralpha-associated tyrosine kinases, we have examined the expression of Src family tyrosine kinases in eosinophils. Among the Src family members, Lyn, Hck, Fgr, and Lck are present in eosinophils, and, among these four kinases, only Lyn is associated with the IL-5Ralpha under basal conditions. We also confirm the association of Janus kinase (Jak)2 with IL-5Ralpha. Lyn kinase phosphorylates both IL-5Ralpha and betacR in vitro. The importance of Lyn kinase for eosinophil differentiation was studied using antisense oligodeoxynucleotides. Lyn antisense oligodeoxynucleotide blocks eosinophil differentiation from stem cells in a dose-dependent manner. The Jak2 inhibitor tyrphostin AG490 also inhibits eosinophil differentiation. The importance of Lyn for eosinophil differentiation was further studied using Lyn knockout mice. The IL-5-stimulated eosinophil differentiation from bone marrow cells is significantly inhibited in Lyn(-/-) mice as compared with that in control mice. We conclude that both Lyn and Jak2 play an essential role in IL-5Ralpha signaling, leading to eosinophil differentiation. The effect of Lyn appears to be relatively specific for the eosinophilic lineage.     

Phosphorylation of Bcl-2 protein by CDC2 kinase during G2/M phases and its role in cell cycle regulation

Although it has been reported that Bcl-2 phosphorylation is associated with certain types of apoptosis, there is much controversy over the functional significance of and the kinases responsible for the phosphorylation. In this study, we examined whether Bcl-2 is phosphorylated by CDC2 kinase, a master regulator of G(2)/M transition in the eukaryotic cell cycle. When CDC2 was activated by okadaic acid in HL-60 cells, Bcl-2 phosphorylation was readily induced. The phosphorylation was correlated with the accumulation of cells in G(2)/M phases, but was not proportional to the level of apoptosis. Furthermore, we found that Bcl-2 was phosphorylated during G(2)/M phases of normal cell cycle. The ability of CDC2 to phosphorylate Bcl-2 was confirmed by in vitro kinase assay with a highly purified CDC2-cyclin B complex. Using synthetic peptides and mutant cell lines, we identified threonine 56, one of two consensus sites for CDC2 within the Bcl-2 sequence, as a residue phosphorylated by CDC2. Mutation at threonine 56 abrogated the cell cycle inhibitory effect of Bcl-2 without affecting anti-apoptotic function. These results suggest that two distinct functions of Bcl-2 (anti-apoptosis and cell cycle inhibition) are differentially regulated by post-translational mechanisms such as phosphorylation. CDC2-mediated phosphorylation of Bcl-2 may play some physiological roles in the negative regulatory events during mitosis.