Phylogenetic relationships of the pygmy rice rats of the genus Oligoryzomys Bangs, 1900 (Rodentia: Sigmodontinae)

Sequences from two mitochondrial genes (cytochrome b and NADH1) were used to produce a molecular phylogeny for 12 named and two undescribed species of the genus Oligoryzomys. All analyses placed Oligoryzomys microtis as the most basal taxon, a finding consistent with previous studies that suggested the west‐central Amazon as a centre of origin for the tribe Oryzomyini to which Oligoryzomys belongs. Biogeographically, this suggests that Oligoryzomys had a South American origin, and later advanced northwards, entering Central America and Mexico more recently. Different analyses have provided consistent support for several additional clades that did not necessarily agree with the species groups hypothesized by previous studies. A molecular clock derived for these data suggests an origin for the genus of 6.67 Mya, with most speciation within the genus occurring between 3.7 and 1.5 Mya. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 551–566.     

The impact of large herbivores on floral composition and vegetation structure in the Naukluft Mountains, Namibia

Floral composition and vegetation structure were investigated on the Naukluft Mountain Plateau to determine (i) whether or not grazing has had an impact on the flora of the Naukluft Mountains during the last two decades and (ii) if so, whether vegetation recovery is influenced by the nature of the rainy season. Vegetation subjected to grazing to large herbivores and vegetation excluded from grazing for 18 and 19 years was compared. Based on classification (TWINSPAN) and ordination (detrended and canonical correspondence analysis) of 20, 10 × 10 m stands within and outside exclosures in two seasons, a clear difference in floristic composition between grazed and not grazed areas was indicated. Although neither the height of the vegetation, not the growth form spectrum differed significantly between grazed and not grazed sites, leaf-succulents were much more abundant when grazing was excluded. This suggests that changes in the vegetation due to grazing pressure have occurred in the last two decades, but the degree of grazing impact is not severe and may be part of the natural savanna ecosystem of the Naukluft Mountains. Whether this trend also occurs in other vegetation types in the Naukluft Mountains remains to the investigated. This revised version was published online in November 2006 with corrections to the Cover Date.     

A test of biotic interactions among two alpine plant species in Australia

This study examines the extent to which interactions among two common alpine/subalpine plant species and their neighbours at the Bogong High Plains in southern Australia are characterized by competition or facilitation. The two target species were Celmisia pugioniformis (Asteraceae) and Carex breviculmis (Cyperaceae). Biotic interactions were examined using vegetation removal manipulations over three growing seasons at five sites across the altitudinal range of tall alpine herbfield communities. Observations recorded growth and mortality. Results for C. pugioniformis clearly indicated facilitation as a dominant process across all sites and seasons. Plants that had their neighbours removed tended to perform worse than plants that had their neighbours left intact. Growth observations for Ca. breviculmis were less clear, but again suggested facilitation. Mortality was distinctly higher among Ca. breviculmis individuals that had their neighbours removed relative to those with neighbours left intact. Results collectively suggest the removal of neighbours acts to reduce growth and increase mortality in C. pugioniformis and Ca. breviculmis throughout the altitudinal range of tall alpine herbfields at the Bogong High Plains. Facilitative and competitive interactions need to be recognized in efforts aimed at mitigating climate change‐associated impacts on the ecology of alpine plant communities. The extent to which biotic interactions may exacerbate or buffer abiotic change is difficult to predict, emphasizing the need for ecological monitoring.     

Agra, arboreal beetles of Neotropical forests: feisthameli group systematics (Carabidae)

Abstract. This paper is the sixth in a series designed to cover taxonomically all species groups of Agra , whose cumulative ranges extend from southernmost Texas to northernmost Argentina. The feisthameli, mixta, virgata and ohausi groups constitute the Feisthameli Section of the genus. The feisthameli group consists of seventeen species which have a composite range extending from Guatemala to Bolivia and southeastern Brazil.
Among this group, nine new species are described from the following type localities: chapada (BRAZIL, Chapada de GuimaráTes), phite (BOLIVIA, Provencia de Gutierrez), para (BRAZIL, Pará), rubra (BRAZIL, Para, SáTo Félix do Xingu), dation (BRAZIL, Minas Gerais, Teófilo Otoni), tuitis (PERU, San Martin, Tarapoto), memnon (BRAZIL, Espírito Santo, SáTo Mateus), lata (BOLIVIA, Santa Cruz), magdalena (COLOMBIA, Santander). A dot map illustrates the range of each taxon.
Distribution and relationships are discussed in general, but detailed cladistic analysis is deferred until taxonomy of other sections is completed. Species distributions correspond in part to pleistocene refuges suggested by other authors based on other classes of organisms; however, more species occur outside such centres than in them.     

Phytochrome chromophore-deficient mutants

Phytochrome chromophore-deficient mutants have been used as phytochrome-deficient plants to study many aspects of plant development. However, there are still a number of important questions to be resolved concerning both the targets and the phenotypic consequences of these mutations. Recently, progress has been made in our understanding of the molecular basis of the chromophore deficiency in these mutants. Biochemical assays for the committed steps of chromophore synthesis have been developed and used to demonstrate that the pcd1 and yellow-green-2 mutants of pea and tomato, respectively, are unable to synthesize biliverdin IXα from heme while pcd2 and aurea are deficient in phytochromobilin synthase activity. This review focuses on how this information can be used to help understand the basis of other chromophore-deficient mutants, such as the hy1 and hy2 mutants of Arabidopsis, and discusses how the phenotype of chromophore-deficient mutants is related to lesions in the chromophore biosynthesis pathway.     

A Race for Space? How Sphagnum fuscum stabilizes vegetation composition during long‐term climate manipulations

Strong climate warming is predicted at higher latitudes this century, with potentially major consequences for productivity and carbon sequestration. Although northern peatlands contain one‐third of the world's soil organic carbon, little is known about the long‐term responses to experimental climate change of vascular plant communities in these Sphagnum‐dominated ecosystems. We aimed to see how long‐term experimental climate manipulations, relevant to different predicted future climate scenarios, affect total vascular plant abundance and species composition when the community is dominated by mosses. During 8 years, we investigated how the vascular plant community of a Sphagnum fuscum‐dominated subarctic peat bog responded to six experimental climate regimes, including factorial combinations of summer as well as spring warming and a thicker snow cover. Vascular plant species composition in our peat bog was more stable than is typically observed in (sub)arctic experiments: neither changes in total vascular plant abundance, nor in individual species abundances, Shannon's diversity or evenness were found in response to the climate manipulations. For three key species (Empetrum hermaphroditum, Betula nana and S. fuscum) we also measured whether the treatments had a sustained effect on plant length growth responses and how these responses interacted. Contrasting with the stability at the community level, both key shrubs and the peatmoss showed sustained positive growth responses at the plant level to the climate treatments. However, a higher percentage of moss‐encroached E. hermaphroditum shoots and a lack of change in B. nana net shrub height indicated encroachment by S. fuscum, resulting in long‐term stability of the vascular community composition: in a warmer world, vascular species of subarctic peat bogs appear to just keep pace with growing Sphagnum in their race for space. Our findings contribute to general ecological theory by demonstrating that community resistance to environmental changes does not necessarily mean inertia in vegetation response.     

Fine-scale genetic structure and its consequence in breeding aggregations of a passerine bird

The pattern of fine-scale genetic structure in a population may reflect current biological processes of the species, such as natal dispersal, the breeding system and demography. We investigated the spatial distribution of nests and fine-scale genetic structure during two breeding seasons in a population of a weakly territorial, flock-living passerine bird, the vinous-throated parrotbill, Paradoxornis webbianus . Nest distribution was clustered. There were two peaks of egg laying within each breeding season, and spatial clustering of nests was more extreme during the second peak after controlling for breeding density. The patterns of genetic structure during the breeding season varied with parental sex and season. Genetic structure occurred during the second laying peak: males breeding within 200 m of one another at this time were significantly more closely related than males breeding farther apart. However, no apparent genetic structure was detected in males during the first laying peak or among females in either laying peak. These results reveal male-oriented kin affiliation during part of the breeding season in this species. Furthermore, juvenile recruitment into the winter flocks was positively related to this increased relatedness among males via kin affiliation. This study implies that fine-scale genetic structure during the breeding season could be a factor determining individual fitness and may play an important role in our understanding of the evolution of social systems.