Nitric oxide level, protein oxidation and antioxidant enzymes in rats infected by Trypanosoma evansi

The acaricidal (miticidal) activity of 90% ethanolic extracts of leaves and stem bark of Swietenia mahogani and Swietenia macrophylla were tested against Varroa destructor mite. Four concentrations were used over two different time intervals under laboratory and field conditions. In general, it was noticed that the acaricidal effect based on mortality and LC(50) of all tested extracts against the Varroa mite was concentration and time dependant. The acaricidal action against Varroa mites was relatively the least for the S. macrophylla stem bark extract at 500 ppm concentration after 48 h while it reached 100% and 95% in case of S. mahogani bark and S. macrophylla leaves, respectively. The% infestation with Varroa in colonies treated with the different extracts at various time intervals showed that the rate of infestation decreased to 0.0% after 12 days from the beginning of treatments with 500 ppm of S. mahogani leaves extract compared to 0.79% decrease after treatment with Mitac, a reference drug (60 mg/colony). The rate of infestation in case of treatments with S. mahogani bark, S. macrophylla leaves and S. macrophylla bark was decreased to 0.11%, 2.41% and 1.08%, respectively. The highest reduction was observed with S. mahogani leaves extract followed by S. mahogani bark. All the tested extracts showed less or no effect on honey bees at the different concentrations and at different bioassay times. This study suggested that the use of natural plant extracts or their products as ecofriendly biodegradable agents could be of high value for the control of Varroa mite.     

nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function

Mitochondrial genomes (mtDNAs) in angiosperms contain numerous group II-type introns that reside mainly within protein-coding genes that are required for organellar genome expression and respiration. While splicing of group II introns in non-plant systems is facilitated by proteins encoded within the introns themselves (maturases), the mitochondrial introns in plants have diverged and have lost the vast majority of their intron-encoded ORFs. Only a single maturase gene (matR) is retained in plant mtDNAs, but its role(s) in the splicing of mitochondrial introns is currently unknown. In addition to matR, plants also harbor four nuclear maturase genes (nMat 1 to 4) encoding mitochondrial proteins that are expected to act in the splicing of group II introns. Recently, we established the role of one of these proteins, nMAT2, in the splicing of several mitochondrial introns in Arabidopsis. Here, we show that nMAT1 is required for trans-splicing of nad1 intron 1 and also functions in cis-splicing of nad2 intron 1 and nad4 intron 2. Homozygous nMat1 plants show retarded growth and developmental phenotypes, modified respiration activities and altered stress responses that are tightly correlated with mitochondrial complex I defects.     

β-d-2'-α-F-2'-β-C-Methyl-6-O-substituted 3',5'-cyclic phosphate nucleotide prodrugs as inhibitors of hepatitis C virus replication: A structure-activity relationship study

The 3',5'-cyclic phosphate prodrug 9-[β-d-2'-deoxy-2'-α-fluoro-2'-β-C-methylribofuranosyl]-2-amino-6-ethoxypurine, PSI-352938 1, has demonstrated promising anti-HCV efficacy in vitro and in human clinical trials. A structure-activity relationship study of the nucleoside 3',5'-cyclic phosphate series of β-d-2'-deoxy-2'-α-fluoro-2'-β-C-methylribofuranosyl nucleoside prodrugs was undertaken and the anti-HCV activity and in vitro safety profile were assessed. Cycloalkyl 3',5'-cyclic phosphate prodrugs were shown to be significantly more potent as inhibitors of HCV replication than branched and straight chain alkyl 3',5'-cyclic phosphate prodrugs. No cytotoxicity and mitochondrial toxicity for prodrugs 12, 13 and 19 were observed at concentrations up to 100μm in vitro. Cycloalkyl esters of 3',5'-cyclic phosphate nucleotide prodrugs demonstrated the ability to produce high levels of active triphosphate in clone-A cells and primary human hepatocytes. Compounds 12, 13 and 19 also demonstrated the ability to effectively deliver in vivo high levels of active nucleoside phosphates to rat liver.     

Characterization of the Fungal Gibberellin Desaturase as a 2-Oxoglutarate-Dependent Dioxygenase and Its Utilization for Enhancing Plant Growth

The biosynthesis of gibberellic acid (GA₃) by the fungus Fusarium fujikuroi is catalyzed by seven enzymes encoded in a gene cluster. While four of these enzymes are characterized as cytochrome P450 monooxygenases, the nature of a fifth oxidase, GA₄ desaturase (DES), is unknown. DES converts GA₄ to GA₇ by the formation of a carbon-1,2 double bond in the penultimate step of the pathway. Here, we show by expression of the des complementary DNA in Escherichia coli that DES has the characteristics of a 2-oxoglutarate-dependent dioxygenase. Although it has low amino acid sequence homology with known 2-oxoglutarate-dependent dioxygenases, putative iron- and 2-oxoglutarate-binding residues, typical of such enzymes, are apparent in its primary sequence. A survey of sequence databases revealed that homologs of DES are widespread in the ascomycetes, although in most cases the homologs must participate in non-gibberellin (GA) pathways. Expression of des from the cauliflower mosaic virus 35S promoter in the plant species Solanum nigrum, Solanum dulcamara, and Nicotiana sylvestris resulted in substantial growth stimulation, with a 3-fold increase in height in S. dulcamara compared with controls. In S. nigrum, the height increase was accompanied by a 20-fold higher concentration of GA₃ in the growing shoots than in controls, although GA₁ content was reduced. Expression of des was also shown to partially restore growth in plants dwarfed by ectopic expression of a GA 2-oxidase (GA-deactivating) gene, consistent with GA₃ being protected from 2-oxidation. Thus, des has the potential to enable substantial growth increases, with practical implications, for example, in biomass production.The GAs are a class of diterpenoid hormones that regulate many aspects of growth and development in plants, including stem extension (Thomas and Hedden, 2006). Despite being ubiquitous in higher plants, they were first discovered as secondary metabolites of the plant pathogenic fungus Gibberella fujikuroi, the causative agent of the bakanae disease of rice (Oryza sativa; Phinney, 1983). This fungus is now known to comprise a group of reproductively isolated species or mating populations, the rice pathogen belonging to mating group C and assigned the name Fusarium fujikuroi (Leslie and Summerell, 2006; Kvas et al., 2009). Details of the GA biosynthetic pathways in both plants and the fungus are known in considerable detail and have revealed that, although they give rise to common metabolites, the pathways utilize different types of enzymes for several steps and appear to have evolved independently (Hedden et al., 2001; Bömke and Tudzynski, 2009).Higher plants differ from the GA-producing fungi by possessing the means for GA inactivation, which is necessary to allow precise regulation of their GA concentration. In contrast, the fungi are not dependent on GAs for their development but produce and secrete large quantities of the compounds to modify the behavior of their hosts. It has been shown that GAs interfere with plant defense by suppressing jasmonate signaling and may thus compromise the host’s ability to evade fungal infection (Navarro et al., 2008; Hou et al., 2010). An apparent ubiquitous inactivation mechanism involves 2β-hydroxylation (Thomas et al., 1999), the effect of which reduces binding of the GA within the active site of the GID1 receptor (Murase et al., 2008). However, GAs such as GA₃ and GA₅, which are unsaturated on C-2, are protected from 2β-hydroxylation and, as a consequence, would be expected to be turned over more slowly than their saturated analogs (King et al., 2008). In accordance with the requirement to regulate GA content, shoots of higher plants contain relatively little 1,2-unsaturated GAs, although developing seeds of some species contain substantial quantities. They are produced in a two-step reaction via a 2,3-dehydro intermediate, which is then hydroxylated on C-3β with rearrangement of the double bond from C-2,3 to C-1,2 (Albone et al., 1990). The reactions are catalyzed by GA 3-oxidase-type enzymes, with a single enzyme catalyzing both reactions in cereal shoots to produce GA₃ from GA₂₀ as a minor by-product of GA₁ biosynthesis (Itoh et al., 2001; Appleford et al., 2006; Fig. 1). In developing seeds of Marah macrocarpus, which contain high concentrations of the 1,2-unsaturated GA, GA₇, the formation of this GA from GA₉ requires the activities of two functionally different GA 3-oxidases acting sequentially (Ward et al., 2010). However, direct formation of GA₇ from GA₄, such as occurs in F. fujikuroi, is not usual in higher plants.Open in a separate windowFigure 1.The GA biosynthetic pathway in plants and F. fujikuroi. The fungal pathway to GA₃ is indicated by the thick gray arrow. DES catalyzes the conversion of GA₄ to GA₇.While the late stages of GA biosynthesis in higher plants, including desaturation when it occurs and 2β-hydroxylation, are catalyzed by 2-oxoglutarate-dependent dioxygenases (ODDs), these enzymes have not been shown to be involved in GA biosynthesis in fungi. F. fujikuroi contains a cluster of seven genes for GA biosynthesis, including a geranylgeranyl diphosphate synthase that is specific to the GA pathway and a bifunctional terpene cyclase that converts geranylgeranyl diphosphate to ent-kaurene in two steps via ent-copalyl diphosphate (for review, see Hedden et al. [2001]; Bömke and Tudzynski [2009]). The formation of GA₃ from ent-kaurene requires the activity of five oxidases (Fig. 1), four of which are cytochrome P450 monooxygenases: P450-4 (ent-kaurene oxidase) oxidizes ent-kaurene to ent-kaurenoic acid (Tudzynski et al., 2001), which is converted to GA₁₄ by P450-1 (GA₁₄ synthase; Rojas et al., 2001); P450-2 functions as a GA 20-oxidase, converting GA₁₄ to GA₄ (Tudzynski et al., 2002), while, in the final step of the pathway, P450-3 13-hydroxylates GA₇ to form GA₁₃ (Tudzynski et al., 2003). However, the nature of the desaturase (DES), which converts GA₄ to GA₇ (Fig. 1), is unknown. When first described, it was found to have closest, albeit weak, homology to a component of the 7α-cephem-methoxylase from Nocardia lactamdurans, giving little indication of its mechanism (Tudzynski et al., 2003). Besides F. fujikuroi, several other ascomycetes, including Sphaceloma manihoticola (Bömke et al., 2008), Phaeosphaeria spp. (Kawaide, 2006), and two other species of the G. fujikuroi species complex, Fusarium konzum (Malonek et al., 2005) and Fusarium sacchari (Troncoso et al., 2010), have been shown to synthesize GAs, although the first two species do not carry out the desaturation step and do not contain a desaturase gene.The promotion of vegetative growth offers potential benefits, for example, in biomass production (Demura and Ye, 2010). In order to test the hypothesis that growth could be stimulated by increasing the shoot concentrations of GAs that are unsaturated on C-2 and therefore resistant to 2β-hydroxylation, we introduced the fungal desaturase gene into plants. The feasibility of this approach was reinforced by the demonstration that DES has the characteristics of an ODD and, therefore, would be expected to function in higher plants.     

RETRACTED ARTICLE: Antituberculars which target decaprenylphosphoryl-β-D-ribofuranose 2′-oxidase DprE1: state of art

Multidrug resistance is a major barrier in the battle against tuberculosis and still a leading cause of death worldwide. In order to fight this pathogen, two routes are practicable: vaccination or drug treatment. Vaccination against Mycobacterium tuberculosis with the current vaccine Mycobacterium bovis Bacillus Calmette–Guerin is partially successful, being its efficacy variable. A few new tuberculosis vaccines are now in various phases of clinical trials. The emergence of multidrug-resistant strains of M. tuberculosis gave the impulse to discover new effective antitubercular drugs, a few of which are in clinical development. Here we focus on three different classes of very promising antitubercular drugs recently discovered (benzothiazinones, dinitrobenzamides, and benzoquinoxalines) that share the same cellular target: a subunit of the heteromeric decaprenylphosphoryl-β-d-ribose 2′-epimerase, encoded by the dprE1 (or Rv3790) gene. This enzyme is involved in the biosynthesis of d-arabinose which is crucial for the synthesis of the mycobacterial cell wall and essential for the pathogen’s survival.     

Biochemical characterization and comparative analysis of two distinct serine proteases from Bothrops pirajai snake venom

This study reports the isolation and biochemical characterization of two different serine proteases from Bothrops pirajai snake venom, thus providing a comparative analysis of the enzymes. The isolation process consisted of three consecutive chromatographic steps (Sephacryl S-200, Benzamidine Sepharose and C2/C18), resulting in two serine proteases, named BpirSP27 and BpirSP41 after their molecular masses by mass spectrometry (27,121 and 40,639 Da, respectively). Estimation by SDS-PAGE under denaturing conditions showed that, when deglycosylated with PNGase F, BpirSP27 and BpirSP41 had their molecular masses reduced by approximately 15 and 42%, respectively. Both are acidic enzymes, with pI of approximately 4.7 for BpirSP27 and 3.7 for BpirSP41, and their N-terminal amino acid sequences showed 57% identity to each other, with high similarity to the sequences of other snake venom serine proteases (SVSPs). The enzymes showed different actions on bovine fibrinogen, with BpirSP27 acting preferentially on the Bβ chain and BpirSP41 on both Aα and Bβ chains. The two serine proteases were also able to degrade fibrin and blood clots in vitro depending on the doses and incubation periods, with higher results for BpirSP41. Both enzymes coagulated the human plasma in a dose-dependent manner, and BpirSP41 showed a higher coagulant potential, with minimum coagulant dose (MCD) of ∼3.5 μg versus 20 μg for BpirSP27. The enzymes were capable of hydrolyzing different chromogenic substrates, including S-2238 for thrombin-like enzymes, but only BpirSP27 acted on the substrate S-2251 for plasmin. They also showed high stability against variations of temperature and pH, but their activities were significantly reduced after preincubation with Cu²⁺ ion and specific serine protease inhibitors. In addition, BpirSP27 induced aggregation of washed platelets to a greater extent than BpirSP41. The results showed significant structural and functional differences between B. pirajai serine proteases, providing interesting insights into the structure–function relationship of SVSPs.     

Computational studies of LXR molecular interactions reveal an allosteric communication pathway

The liver X receptor, LXRα, is an important regulator of genes involved in metabolism and inflammation. The mechanism of communication between the cofactor peptide and the ligand in the ligand-binding pocket is a crucial and often discussed issue for the nuclear receptors (NRs), but such allosteric signaling pathways are difficult to detect and the transmission mechanism remains elusive. Here, we apply the anisotropic thermal diffusion method to the LXRα with bound coactivator and ligand. We detected a possible communication pathway between the coactivator peptide and the ligand. The signal is transmitted both through the receptor backbone and side chains. A key signaling residue is the first leucine in the cofactor peptide recognition motif LXXLL, which is conserved within the NR cofactors, suggesting a general mechanism for allosteric signaling. Furthermore, we studied the LXR receptor and cofactor molecular interactions in detail using molecular dynamics simulations. The protein-protein interaction patterns in the complexes of nine different cofactor peptides and holo-LXRα were characterized, revealing the importance of the receptor-cofactor charge clamp interaction. Specific, but infrequently occurring interactions were observed toward the cofactor peptide C-terminal residues. Thus, additional specificity between LXRα and its cofactors is likely to be found in molecular interactions outside the cofactor peptide or in other biological factors.