Real-time PCR method to quantify Sp245 strain of Azospirillum baldaniorum on Brachiaria grasses under field conditions

Plant and Soil - Soil microbiome roles in agriculture is becoming more and more important. This importance is also reflected on the way plants are seen: complex organisms formed by the plant itself...     

Expression of ERp5 and GRP78 on the membrane of chronic lymphocytic leukemia cells: association with soluble MICA shedding

MICA is a ligand of the activating receptor NKG2D, expressed by NK and T cells. MICA expression is induced in cancer cells favoring their elimination by the immune system; however, many advanced tumors shed soluble MICA (sMICA), which impairs NKG2D-mediated cytotoxicity. ERp5 and GRP78 are endoplasmic reticulum-resident proteins that are translocated to the surface of epithelial tumor cells where they interact with MICA and are involved in sMICA shedding. In this study, we analyze the role of ERp5 and GRP78 in sMICA shedding in chronic lymphocytic leukemia (CLL). Immunofluorescence and flow cytometry analyses showed that ERp5 and GRP78 were significantly expressed on the surface of B cells and leukemia cells, but they were not expressed on T cells. The expression of ERp5 and GRP78 was significantly higher in leukemia cells than in B cells from controls. ERp5 and GRP78 co-localized with MICA on the surface of leukemia cells and the levels of expression of ERp5 and GRP78 correlated with the level of expression of membrane-bound MICA in CLL patients. Associated with higher expression of membrane-bound ERp5 and GRP78, serum sMICA levels were approximately threefold higher in patients than in controls. Elevated sMICA levels in CLL patients were associated with the down-modulation of NKG2D surface expression on CD8 T cells. Finally, pharmacological inhibition of B cell lines and stimulated leukemia cells showed that ERp5 activity is involved in sMICA shedding in CLL. In conclusion, these results uncover a molecular mechanism which regulates MICA protein shedding and immune evasion in CLL.     

Biotechnologically relevant enzymes and proteins

The mold Aspergillus giganteus produces a basic, low molecular weight protein showing antifungal properties against economically important plant pathogens, the AFP (Antifungal Protein). In this study, we investigated the mechanisms by which AFP exerts its antifungal activity against Magnaporthe grisea. M. grisea is the causal agent of rice blast, one of the most devastating diseases of cultivated rice worldwide. AFP was purified from the extracellular medium of A. giganteus cultures. The AFP protein was found to induce membrane permeabilization in M. grisea cells. Electron microscopy studies revealed severe cellular degradation and damage of plasma membranes in AFP-treated fungal cells. AFP however failed to induce membrane permeabilization on rice or human HeLa cells. Furthermore, AFP enters the fungal cell and targets to the nucleus, as revealed by co-localization experiments of Alexa-labeled AFP with the SYTOX Green dye. Finally, AFP binds to nucleic acids, including M. grisea DNA. Our results suggest that the combination of fungal cell permeabilization, cell-penetrating ability and nucleic acid-binding activity of AFP determines its potent antifungal activity against M. grisea. These results are discussed in relation to the potential of the AFP protein to enhance crop protection against fungal diseases.     

The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitivity to abiotic stresses in transgenic rice

The nonexpressor of pathogenesis-related (PR) genes (NPR1) protein plays an important role in mediating defense responses activated by pathogens in Arabidopsis. In rice, a disease-resistance pathway similar to the Arabidopsis NPR1-mediated signaling pathway one has been described. Here, we show that constitutive expression of the Arabidopsis NPR1 (AtNPR1) gene in rice confers resistance against fungal and bacterial pathogens. AtNPR1 exerts its protective effects against fungal pathogens by priming the expression of salicylic acid (SA)-responsive endogenous genes, such as the PR1b, TLP (PR5), PR10, and PBZ1. However, expression of AtNPR1 in rice has negative effects on viral infections. The AtNPR1-expressing rice plants showed a higher susceptibility to infection by the Rice yellow mottle virus (RYMV) which correlated well with a misregulation of RYMV-responsive genes, including expression of the SA-regulated RNA-dependent RNA polymerase 1 gene (OsRDR1). Moreover, AtNPR1 negatively regulates the expression of genes playing a role in the plant response to salt and drought stress (rab21, salT, and dip1), which results in a higher sensitivity of AtNPR1 rice to the two types of abiotic stress. These observations suggest that AtNPR1 has both positive and negative regulatory roles in mediating defense responses against biotic and abiotic stresses.     

Distribution of the reef manta ray Mobula alfredi and the oceanic manta ray Mobula birostris in the Philippines: a collaborative effort for conservation

Little is known about manta ray population size, structure and connectivity in the Philippines. In collaboration with dive operators, non-governmental organizations and authorities, sightings of manta rays were collated into a single national database. Using in-water photographs and videos gathered through citizen science and dedicated research efforts, this study compiled sightings between 2004 and 2020, showing 22 separate sites throughout the archipelago with manta rays present. A total of 392 individual reef manta rays (Mobula alfredi) and 107 oceanic manta rays (Mobula birostris) were identified from the collected footage. Four specific sites in the provinces of Masbate and Palawan together hosted 89% of all identified individuals and accounted for 95% of sightings, highlighting these areas are key aggregation sites. This study also reports the movements of M. birostris within the Philippines, based on photo-identification of three individuals moving 150 km between Cebu and Masbate. Despite the growing number of recreational divers in Daanbantayan and San Jacinto, an 80% decline in M. birostris sightings was observed at these sites. To ensure effective future conservation, it is recommended that efforts focus on the identification and protection of manta ray hotspots and migratory corridors, the creation of a sustainable tourism framework and, most important, the implementation of mitigation strategies to reduce fisheries interactions.     

Dynamic and static hysteresis in crayfish stretch receptors

This report calls attention to the magnitude and pervasiveness of hysteresis in the coding from length to afferent discharges in crayfish stretch receptor organs (SRO's). The influence of previous lengths on the rate that corresponded to a particular length L was manifest by a substantial excess of that encountered when L was arrived at from a shorter value over that when arrived at from a longer one. Hysteretic loops were present under dynamic conditions when length was modulated quasi-sinusoidally in the length vs. rate Lissajous plots of both the slowly and the fast-adapting organs (SAO, FAO), either not perturbed or perturbed. Loops became narrower with increasing frequency (except for when 1 to 1 locking appeared, Diez Martínez and Segundo, 1983). Hysteretic loops were present under static conditions when length changes were step-like, and fully adapted rates were noted in the SAO and in the perturbed FAO.Earlier reports suggest that hysteresis reflects jointly at least mechanical and electrogenic factors in the length-to-local dendritic effects and in the generator potential to discharge stages.Several models, either mechanical or mathematical, reveal hysteretic behavior. Detailed analysis has not been performed except for one instance (Chua and Bass, 1972) where, for example, loop-narrowing at higher frequencies occurs only with certain weighting functions whose physiological significance is as yet obscure.Hysteresis may be more widespread than suspected in sensory (and perhaps other) systems: it involves a multi-valuedness that raises the issue of how central mechanisms infer stimulus magnitude retrospectively from the discharge.Supported by funds from the Brain Research Institute and by a scholarship to ODM from the Departmento de Becas, Universidad Nacional Autónoma de México (UNAM)     

Slowly adapting stretch-receptor organs: Periodic stimulation with and without perturbations

The length of isolated slowly adapting stretch-receptor organs (SAO) from crayfish was submitted to approximately sinusoidal modulations of 0.030–0.800 mm at frequencies of about 0.2, 1.0 or 3.0 cps. Sines were imposed either by themselves (clean) or mixed with (perturbed by) fast irregular length fluctuations or jitter. The amplitude of the latter remained within a specified fraction of the modulation, usually two-thirds (or x0.66), though from one twentieth to twice (or x0.05–2.00) were explored. The afferent impulse discharge was recorded: rate over bins of about 1/10 of the period was plotted as function of ongoing time. Within stationary epochs, average cycles were analyzed primarily in terms of lengths and discharge intensities. Each point in the displays corresponded to a particular bin along the average cycle, the abscissa and the ordinate being the length and the corresponding discharge rate, respectively; points were numbered in the order of their generation. Similar displays were constructed for rate vs velocity, rate vs acceleration, and rate-change vs velocity. Experiments without jitter. The non-perturbed state. With 0.2 and 1.0 cps, the rate vs length display had a clockwise loop with a flat extension to the left. The SAO at its shortest did not discharge and remained silent for some time. As length augmented, it eventually started firing, reaching maximum rate while being stretched (lead) or at maximum length. While length decayed, the organ fired less, slowing down, stopping at a length greater than where it had started, and then remaining silent until the end of the cycle. With 3.0 cps, the display had a counterclockwise loop with a flat extension on the left. The SAO did not discharge at its shortest, and fired more during relaxation than during stretching, peaking when relaxing (lag) and stopping at a length greater than where it had started. Artificial introduction of time separations between length and rate converted displays into acceptably straight lines only in a few, usually 0.2 cps, cases. The rate vs length relation exhibited consistent departures from monotonic increase and from linearity: departures were large fractions of the overall swings involving flat extensions, leads, lags, saturation effects, asymmetric rate sensitivities, and locking (which was frequent with 1.0 or 3.0 cps and could conceivably be more common with faster modulations). Other experimental paradigms have demonstrated multivaiued steady-state-rate-length relations. The variability from cycle to cycle of the rate in a particular bin was high or low for bins with low or high rates, respectively. Rate vs velocity plots were counter-clockwise loops with a base upon the abscissae, higher rates when velocity was decaying than when augmenting, and maxima at non-negative velocities. Rate-change vs velocity plots showed shortening associated with either discharge, decreases or small changes, and lengthenings associated with discharge increases, greater when augmenting if at 0.2 cps or when decaying if at 3.0 cps. Rate vs stimulus acceleration plots were, for the three tested frequencies, counterclockwise loops with a base upon the abscissae and higher rates when acceleration was decaying than when augmenting, suggesting a particular role in sensing accelerations. The sensitivity to length was evaluated by comparing the rate-swings at each frequency using identical bin-widths and depths. This procedure is considered to be most meaningful physiologically. Sensitivity was contingent upon the bin-width: with small bins (30 and 120 ms) it was highest for 3.0 cps, with intermediate bins (160 ms) it was highest for 1.0 cps, and with larger bins it was practically uniform. Differences involved factors of under x1.7. Experiments with jitter. The perturbed state. Jitter changed radically the rate vs length displays, converting all of them into clockwise folium-like loops, which implied a shift from lag to lead at 3.0 cps. Introduction of appropriate lags brought points acceptably close to straight, positively sloped segments: this occurred often at 0.2 cps, sometimes at 1.0 cps, and exceptionally at 3.0 cps. Jitter altered the variability profile along the cycle, decreasing peak variability and not affecting or increasing the minimum; variability along the cycle was thus reduced and uniformed and identification of stimuli on the basis of discharges was improved. Jitter amplitude was an important issue. The larger ones, about the modulation size, increased the lowest bin-rates, particularly at 0.2 and 1.0 cps, and increased the peaks at 0.2 cps, decreasing them at 1.0 and 3.0 cps. The smaller jitter, about 1/10 of the modulation, affected the lowest rates little, but increased the peak rate at 0.2 cps, decreasing it at 1.0 and 3.0 cps; display shapes changed little. A qualitative model of the SAO involves subsystems with linear features, as well as rectification, stiction-like and saturation-like properties. Depending upon back-ground length, modulation depth, jitter and several other issues, the organ can perform frankly nonlinearly, piece-wise linearly or linearly. Within each context, a particular stimulus is of interest and can be referred to as the signal; others are not, and can be referred to as noise, acting as perturbations. Small, erratic perturbations influence strongly transduction of large steps or sines, simplifying and making it more proportionate. Large regular perturbations act upon small signals too, but their influence has been explored less extensively.Supported by grants from NIH and NSF