Sequence‐ and activity‐based screening of microbial genomes for novel dehalogenases

Dehalogenases are environmentally important enzymes that detoxify organohalogens by cleaving their carbon-halogen bonds. Many microbial genomes harbour enzyme families containing dehalogenases, but a sequence-based identification of genuine dehalogenases with high confidence is challenging because of the low sequence conservation among these enzymes. Furthermore, these protein families harbour a rich diversity of other enzymes including esterases and phosphatases. Reliable sequence determinants are necessary to harness genome sequencing-efforts for accelerating the discovery of novel dehalogenases with improved or modified activities. In an attempt to extract dehalogenase sequence fingerprints, 103 uncharacterized potential dehalogenase candidates belonging to the α/β hydrolase (ABH) and haloacid dehalogenase-like hydrolase (HAD) superfamilies were screened for dehalogenase, esterase and phosphatase activity. In this first biochemical screen, 1 haloalkane dehalogenase, 1 fluoroacetate dehalogenase and 5 l -2-haloacid dehalogenases were found (success rate 7%), as well as 19 esterases and 31 phosphatases. Using this functional data, we refined the sequence-based dehalogenase selection criteria and applied them to a second functional screen, which identified novel dehalogenase activity in 13 out of only 24 proteins (54%), increasing the success rate eightfold. Four new l -2-haloacid dehalogenases from the HAD superfamily were found to hydrolyse fluoroacetate, an activity never previously ascribed to enzymes in this superfamily.     

Mitochondrial respiratory activity of the trematode Fasciola hepatica

Polarographic studies have been made on the respiratory activity of isolated mitochondria of the trematode F. hepatica. Respiratory chain transferring electrons to oxygen and which is sensitive to cyanide was found in the mitochondria. Certain coupling between respiration and phosphorylation was observed. Intact mitochondria of the trematode exhibit the respiratory control although its level is significantly lower than that in the mitochondria from rat liver. The existence of an alternative respiratory chain was demonstrated in which electron transport is not associated with ATP synthesis.     

Integration and expression of the human dihydrofolate reductase gene in the Bacillus subtilis chromosome

Integration of functionally active human dihydrofolate reductase (hDHFR) gene into the Bacillus subtilis chromosome was performed. The clones obtained contained 1 to 7 copies of hDHFR gene per chromosome equivalent and were resistant to trimethoprim. In cell lysates of such clones a protein with the molecular mass of hDHFR was detected. The hDHFR gene was stably maintained in all clones having this gene integrated into the bacterial chromosome, when grown under non-selective conditions.     

Various means of integration of the expressible human dihydrofolate reductase gene into the Bacillus subtilis genome

Integration of expressible DNA corresponding to the human dihydrofolate reductase (hDHFR) gene into the Bacillus subtilis genome has been achieved in different ways. The clones obtained contained one to seven copies of this gene per genome equivalent and were resistant to trimethoprim. Clones produce a new protein coded by the integrated hDHFR gene. In all clones, the integrated DNA was stably maintained even under nonselective growth conditions.     

Hybridization of asporogenic strains of Hansenula polymorpha yeasts by protoplast fusion

Intrastrain and interstrain hybrids of different ploidy were produced by the fusion of protoplasts of Hansenula polymorpha haploid and diploid strains. The diploid hybrids were found to be stable in contrast to the triploid and tetraploid hybrids. The instability of the triploid and tetraploid states in Hansenula polymorpha was expressed in the elevated frequency of spontaneous formation of auxotrophic markers and in the decreased content of DNA per cell in the course of storage.     

Roentgen anatomy of the arteries of the gallbladder (according to intravital angiography)]

Examiniation of 163 series of coeliacograms and 10 series of angiograms of the superior mesentery artery has established thatby a conventional method the gallbladder artery is revealed in 79.1% of observations. The gall-bladder is blood supplied by a solitary or a double artery , or by numerous small vessels (scattered type of blood supply). Distinctive features of the gall-bladder arteries are:the site of their origination, the type of branching, irregular sinous course and false enlargements of the lumen as well as the disposition of arteries and their branches coinciding withthe topographs of the bladder determined in the parenchymatous phase. The main causes preventing determination of the gall-bladder arteries are both insufficiently contrast angiograms andpoor accumulation of the contrast substance in the bladder wall. Superposition of theshade of the enlarged liver is one of the obstacles in determinating the gall-bladder arteries. The author's experience show that the sourses of the gall baldder blood supply can be revealedin most cases in ordinary coeliacograms.     

Simultaneous saccharification and fermentation of straw to ethanol using the thermotolerant yeast strain Kluyveromyces marxianus imb3

The thermotolerant, ethanol-producing yeast strain Kluyveromyces marxianus IMB3 was grown at 45°C on media containing 2, 4 and 6 % (w/v) pulverized barley straw and supplemented with 2% (v/v) cellulase. Maximum ethanol concentrations produced were 2, 3 and 3.6g/l, respectively. When the pulverized straw was replaced by NaOH pretreated straw (at 2, 4 and 6% (w/v); based on original untreated straw), ethanol concentrations increased to maxima of 3.9, 8, and 12g/l, respectively. The ethanol yields amount to 20g ethanol from 100g of straw.     

Phylogenetic analysis of slippage-like sequence variation in the V4 rRNA expansion segment in tiger beetles (Cicindelidae)

Sequence variation in the middle part of the small-subunit rRNA was studied for representatives of the major groups in the family Cicindelidae (Coleoptera). All taxa exhibited a much expanded segment in variable region V4 compared to D. melanogaster. This expanded segment was not found in other groups of beetles, including three taxa in the closely related Carabidae. Secondary structure predictions indicate that the expanded segment folds into a single stem-loop structure in all taxa. Despite its structural conservation, the fragment differs strongly in primary sequence, even between closely related sister taxa. Several features of these sequences are consistent with slippage replication as the mechanism that has generated this sequence variation: the level of internal sequence repetition as measured by the relative simplicity factor (RSF), its variation in length between close relatives, and the strong nucleotide bias compared to the remainder of the gene. With few exceptions, there was also a correlation between sequence length and the level of sequence repetition, frequently interpreted as the result of slippage. Phylogenies inferred from the expansion segment were not consistent with existing hypotheses from other molecular data for the group. This indicates that DNA sequences in this region are not homologous throughout the entire Cicindelidae, but it leaves open the possibility that this expansion segment can be used for phylogeny reconstruction within subgroups. The implications of a phylogenetic approach to the understanding of slippage-like evolution are discussed.      

Computed tomography in the diagnosis of asymptomatic renal cysts]

The authors analyzed CT-data on 1732 patients aged 21 to 83 to detect symptom-free renal cysts which were found in 30% of the patients. The rates and prevalence of symptom-free renal cysts were studied. A high resolution was noted. A majority of cysts was detected in patients over 50. The rates and prevalence of renal cysts testified to their low clinical significance (in the authors' opinion).