Rapid Homogenization of Multiple Sources: Genetic Structure of a Recolonizing Population of Fishers

Abstract: Fishers (Martes pennanti) were extirpated from much of southern Ontario, Canada, prior to the 1950s. We hypothesised that the recent recolonization of this area originated from an expansion of the population in Algonquin Provincial Park, which historically served as a refuge for fishers. To test this hypothesis, we created a sampling lattice to encompass Algonquin and the surrounding area, and we collected contemporaneous DNA samples. We sampled fishers from each of 35 sites and genotyped them at 16 microsatellite loci. Using a Bayesian assignment approach, with no a priori geographic information, we inferred 5 discrete genetic populations and used genetic population assignment as a means to cluster sites together. We concluded that the Algonquin Park fisher population has not been a substantial source for recolonization and expansion, which has instead occurred from a number of remnant populations within Ontario, Quebec, and most recently from the Adirondacks in New York, USA. The genetic structure among sampling sites across the entire area revealed a pattern of isolation-by-distance (IBD). However, an examination of the distribution of genetic structure (F_ST/1^- F_ST) at different distances showed higher rates of gene flow than predicted under a strict IBD model at small distances (40 km) within clusters and at larger distances up to 100 km among clusters. This pattern of genetic structure suggests increased migration and gene flow among expanding reproductive fronts.     

Traffic Volume Alters Elk Distribution and Highway Crossings in Arizona

ABSTRACT We used 38,709 fixes collected from December 2003 through June 2006 from 44 elk (Cervus elaphus) fitted with Global Positioning System collars and hourly traffic data recorded along 27 km of highway in central Arizona, USA, to determine how traffic volume affected elk distribution and highway crossings. The probability of elk occurring near the highway decreased with increasing traffic volume, indicating that elk used habitat near the highway primarily when traffic volumes were low (<100 vehicles/hr). We used multiple logistic regression followed by model selection using Akaike's Information Criterion to identify factors influencing probability of elk crossings. We found that increasing traffic rates reduced the overall probability of highway crossing, but this effect depended on both season and the proximity of riparian meadow habitat. Elk crossed highways at higher traffic volumes when accessing high quality foraging areas. Our results indicate that 1) managers assessing habitat quality for elk in areas with high traffic-volume highways should consider that habitat near highways may be utilized at low traffic volumes, 2) in areas where highways potentially act as barriers to elk movement, increasing traffic volume decreases the probability of highway crossings, but the magnitude of this effect depends on both season and proximity of important resources, and 3) because some highway crossings still occurred at the high traffic volumes we recorded, increasing traffic alone will not prevent elk-vehicle collisions. Managers concerned with elk-vehicle collisions could increase the effectiveness of wildlife crossing structures by placing them near important resources, such as riparian meadow habitat.     

The role of forest maturation in causing the decline of Black Grouse Tetrao tetrix

Black Grouse Tetrao tetrix in Britain have declined through the 20th century, and most birds are now in Scotland. Many causes for this decline have been suggested, notably agricultural intensification, increased grazing levels and moorland afforestation. We examine habitat correlates of Black Grouse distribution and population change from a 700-km² area in the core of the Scottish range, where the numbers of lekking male Black Grouse declined by an estimated 70% to 270 between 1990 and 2002. Habitat data were derived from satellite imagery, in combination with map and field-collected data. Lek occurrence, lek size and changes in lek size were all correlated with forest structure, either positively with the amount of pre-thicket forest cover, or negatively with closed canopy cover. Additional effects of the cover of grass moor and dry heath suggest that Black Grouse are most likely to occur where moorland comprises Heather Calluna vulgaris and grass mosaics. Analysis of the change in Black Grouse abundance within 1.5 km of discrete forest blocks suggests that forest maturation, which has been the dominant habitat change during the course of the study, alone accounts for 58–78% of the decline. Given the close association of Black Grouse and the occurrence of woodland (and particularly conifer plantation) throughout much of their British range, these findings can be used to inform the design of management schemes for the recovery of Black Grouse.     

Are cloud forest tree structure and environment related in the Venezuelan Andes?

Cloud forest vegetation structure and composition were studied in the Venezuelan Andes at three sites in Mérida State. Although the sites are within 10 to 30 km of each other, climatic, geologic and topographic differences are remarkable. The main purpose of the study was to determine the relationship of specific environmental variables to forest vegetation characteristics, including basal area, tree height, density and diversity, and leaf area index (LAI). At 51 plots, all trees' diameter at breast height >10 cm were recorded and identified. Although the environment at the three sites is distinctive, the tree species composition of the most abundant species was very similar. None of the measured environment variables were significantly correlated with the measured vegetation structure variables, except LAI, which was correlated with slope orientation; LAI showed higher values at south‐facing plots. Tree height was relatively uniform, while basal area was highly variable and reached very high values. Stem densities were in the range reported elsewhere in cloud forests. Multivariate analysis using structure or composition data shows segregation of the plots by site. Principal component analyses by site indicate a minor impact of environmental factors on forest variables. At each site, a particular group of species are correlated with the ordination axes. We conclude that species pools and forest dynamics add to the complexity of the structure of the studied cloud forests.     

Changing sources of soil respiration with time since fire in a boreal forest

Radiocarbon signatures (Δ¹⁴C) of carbon dioxide (CO₂) provide a measure of the age of C being decomposed by microbes or respired by living plants. Over a 2‐year period, we measured Δ¹⁴C of soil respiration and soil CO₂ in boreal forest sites in Canada, which varied primarily in the amount of time since the last stand‐replacing fire. Comparing bulk respiration Δ¹⁴C with Δ¹⁴C of CO₂ evolved in incubations of heterotrophic (decomposing organic horizons) and autotrophic (root and moss) components allowed us to estimate the relative contributions of O horizon decomposition vs. plant sources. Although soil respiration fluxes did not vary greatly, differences in Δ¹⁴C of respired CO₂ indicated marked variation in respiration sources in space and time. The ¹⁴C signature of respired CO₂ respired from O horizon decomposition depended on the age of C substrates. These varied with time since fire, but consistently had Δ¹⁴C greater (averaging ～120‰) than autotrophic respiration. The Δ¹⁴C of autotrophically respired CO₂ in young stands equaled those expected for recent photosynthetic products (70‰ in 2003, 64‰ in 2004). CO₂ respired by black spruce roots in stands >40 years old had Δ¹⁴C up to 30‰ higher than recent photosynthates, indicating a significant contribution of C stored at least several years in plants. Decomposition of O horizon organic matter made up 20% or less of soil respiration in the younger (<40 years since fire) stands, increasing to ～50% in mature stands. This is a minimum for total heterotrophic contribution, since mineral soil CO₂ had Δ¹⁴C close to or less than those we have assigned to autotrophic respiration. Decomposition of old organic matter in mineral soils clearly contributed to soil respiration in younger stands in 2003, a very dry year, when Δ¹⁴C of soil respiration in younger successional stands dropped below those of the atmospheric CO₂.     

A tiny lizard (Lepidosauria,Squamata) from the Lower Cretaceous of Spain

Abstract: The smallest living amniotes are all lizards, but the fossil history of this size trait in Squamata is difficult to follow because small skeletons have low preservation potential and are often hard to detect in the field. A new squamate taxon, Jucaraseps grandipes gen. et sp. nov., is here described on the basis of an articulated skeleton from the Early Cretaceous Spanish lagerstätten of Las Hoyas. It differs from other known Mesozoic lizards in combining very small body size with a short rostrum, low maxillary tooth count, a relatively slender and elongated body, and short limbs with large hind feet. Phylogenetic analysis using TNT places it on the stem of a clade encompassing scincomorphs, gekkotans, snakes, amphisbaenians and anguimorphs. Comparison with modern lizards suggests it was probably a cryptic surface or subsurface ground dweller but not a burrower.     

Spatial and genetic investigation of aggregation in Ischnochiton (Polyplacophora; Neoloricata; Ischnochitonina; Ischnochitonidae; Ischnochitoninae) species with different larval development

Many species are aggregated at some spatial scale but for some species, due to habitat or behaviour, aggregation can be difficult to assess quantitatively. Here, aggregation of chiton species (Polyplacophora; Neoloricata; Ischnochitonina; Ischnochitonidae; Ischnochitoninae; Ischnochiton) living under boulders in intertidal boulder fields was investigated at several relatively small spatial scales. Closely related species were found to be aggregated at the level of individual boulders, but evidence for grouping at the larger scale of patches of boulders varied. When organisms are mobile, dispersal can have an important influence on spatial patterns. Some organisms, such as marine invertebrates, have a highly dispersive larval phase that can influence spatial patterns of adults, particularly where the adult is sessile or relatively sedentary. Aggregation was compared in two species to test whether different modes of larval development influence spatial pattern. There was some evidence that species with a planktonic larva were even more aggregated than expected, in contrast to predictions based on this mode of development. Both types of larval development (planktonic and non‐planktonic) produce larvae with short development times in these species, so one possible explanation for the grouping habit of these chitons is that they do not disperse, at all, from their natal boulder. The complexity of the boulder field habitat and the cryptic behaviour of these chitons may also contribute to a lack of dispersal. A simple application of a genetic method indicated, however, that philopatry at this scale is unlikely.     

Markedly discordant mitochondrial DNA and allozyme phylogenies of tube-nosed fruit bats, Nyctimene, at the Australian–Oriental biogeographical interface

Australo-Papuan tube-nosed fruit bats of the genus Nyctimene reach their most westerly distribution on the island archipelagos of eastern Indonesia. A recent morphological examination indicates three species occur on Moluccan islands. Both allozyme electrophoresis and mitochondrial DNA (mtDNA) sequencing reveal there are only two species present, Nyctimene cephalotes and Nyctimene albiventer , but there is considerable disparity between the results obtained from the two genetic data sets. Allozyme data indicate N. albiventer occurs on Wokam, which sits on the Australian continental shelf and was joined to Australo-Papua during the last glacial maximum, and N. cephalotes on the other Moluccan islands, all of which are off the continental shelf. Divergence of these two species is dated at approximately 1.5 Mya. By contrast, the mtDNA gene tree shows two deep clades, one containing all specimens from Wokam and Yamdena, and the second all the specimens from the other islands. This especially marked incongruence between the two genetic data sets is ascribed to either a single introgression event of N. albiventer mtDNA into N. cephalotes on Yamdena at around 100 000 ya or lineage sorting of very old mtDNA lineages that coalesce a rather long time before the speciation event. These results highlight that caution should be exercised when relying on mtDNA as barcodes in species taxonomy. The continental-associated N. albiventer on Wokam has higher levels of allozyme heterozygosity and mtDNA nucleotide diversity than the N. cephalotes populations occurring on the more remote islands, indicating that this colonizing species has experienced bottlenecks and/or a low effective population size since speciation.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 589–602.     

Uncovering tropical diversity: six sympatric cryptic species of Blepharoneura (Diptera: Tephritidae) in flowers of Gurania spinulosa (Cucurbitaceae) in eastern Ecuador

Diversification of phytophagous insects is often associated with changes in the use of host taxa and host parts. We focus on a group of newly discovered Neotropical tephritids in the genus Blepharoneura , and report the discovery of an extraordinary number of sympatric, morphologically cryptic species, all feeding as larvae on calyces of flowers of a single functionally dioecious and highly sexually dimorphic host species ( Gurania spinulosa ) in eastern Ecuador. Molecular analyses of the mitochondrial cytochrome oxidase-I gene from flies reared from flowers of G. spinulosa reveal six distinct haplotype groups that differ by 7.2–10.1% bp (uncorrected pairwise distances; N  = 624 bp). Haplotype groups correspond to six distinct and well-supported clades. Members of five clades specialize on the calyces of flowers of a particular sex: three clades comprise male flower specialists; two clades comprise female flower specialists; the sixth clade comprises generalists reared from male and female flowers. The six clades occupy significantly different morphological spaces defined by wing pigmentation patterns; however, diagnostic morphological characters were not discovered. Behavioural observations suggest specific courtship behaviours may play a role in maintaining reproductive isolation among sympatric species. Journal compilation  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 779–797. No claim to original US government works.