Increasing fibroblast response to materials using nanotopography: morphological and genetic measurements of cell response to 13-nm-high polymer demixed islands

It is becoming clear that cells can respond not only to micometric scale topography, but may also to nanometric scale topography. The production of reproducibly sized nanometric features has relied heavily on expensive and time-consuming methods of manufacture, such as electron beam lithography. Polymer demixing of polystyrene and polybromostyrene has been found to produce nanoscale islands of reproducible height, and the islands have been previously shown to effect cell spreading compared to planar surfaces. This study observes morphological, cytoskeletal, and molecular changes in fibroblast reaction to 13-nm-high islands. The methods employed include scanning electron microscopy, fluorescent microscopy, and 1718 gene microarray. The results show that the cells respond to the islands by broad gene up-regulation, notably in the areas of cell signaling, proliferation, cytoskeleton, and production of extracellular matrix proteins. Microscopical results provide confirmation of the microarray findings.     

Differential Patterns of Gene Expression and Gene Complement in Laboratory-Evolved Lines of E. coli

Laboratory selection experiments play a prominent role in understandingorganismal adaptation. Although bacteria are not yet commonlyused for such experiments, they are well suited for analysesof both the organismic and the genetic basis of adaptation.Bacteria can be maintained in large populations while occupyinglimited laboratory space, have short generation times, are wellcharacterized physiologically, biochemically, and genetically,and are readily frozen and revived from the freezer. In addition,the genomes of many species are completely sequenced and knowledgeof gene function is unparalleled. Here we review general aspectsof selection experiments, the history of using selection experimentsin combination with thermal biology and genomics, and highlightfindings from six lines of Escherichia coli adapted to hightemperature (41.5°C), including changes in organismal fitness,physiological performance, gene complement and gene expression.Our results are an example of the powerful insights that canbe discovered by combining the tools and analyses of many biologicaldisciplines including genomics, evolutionary biology, genetics,and evolutionary physiology.     

Association between reported venlafaxine use in early pregnancy and birth defects,national birth defects prevention study, 1997–2007

BACKGROUND

Few epidemiologic studies have investigated the use of venlafaxine (Effexor XR capsules, Product Monograph, Wyeth, Montreal, Canada), an antidepressant used to treat major depression and anxiety disorders in adults, during pregnancy. Our objective was to determine whether use of venlafaxine during pregnancy is associated with specific birth defects.

METHODS

We used data from the National Birth Defects Prevention Study (NBDPS), a population‐based, case‐control study in the United States. Our analysis included mothers with pregnancies affected by one of 30 selected birth defects (cases) and babies without birth defects (controls) with estimated dates of delivery between 1997 and 2007. Exposure was any reported use of venlafaxine from 1 month preconception through the third month of pregnancy. We calculated adjusted odds ratios (aORs) and 95% Fisher Exact confidence intervals (CIs) for 24 birth defect groups for which at least 400 case mothers were interviewed. Our adjusted analyses controlled for maternal age and race/ethnicity.

RESULTS

Among the 27,045 NBDPS participants who met inclusion criteria, 0.17% (14/8002) of control mothers and 0.40% (77/19,043) of case mothers reported any use of venlafaxine from 1 month preconception through the third month of pregnancy. Statistically significant associations were found for anencephaly, atrial septal defect (ASD) secundum, or ASD not otherwise specified, coarctation of the aorta, cleft palate, and gastroschisis.

CONCLUSIONS

Our data suggest associations between periconceptional use of venlafaxine and some birth defects. However, sample sizes were small, CIs were wide, and additional studies are needed to confirm these results. Birth Defects Research (Part A), 2013. © 2012 Wiley Periodicals, Inc.     

Targeting stromal cells for the treatment of platelet-derived growth factor C-induced hepatocellular carcinogenesis

Non-invasive therapies for the treatment of hepatocellular carcinoma (HCC) would be of great benefit to public health. To this end, we have developed a platelet-derived growth factor-C (PDGF-C) transgenic (Tg) mouse model, which mimics many aspects of human liver carcinogenesis. Specifically, overexpression of PDGF-C results in liver fibrosis, which is preceded by activation and proliferation of hepatic stellate cells, and is followed by the development of dysplastic lesions and angiogenesis, and progression to HCCs by 8 months of age. Here, we show that PDGF-C overexpression induces the proliferation of endothelial-like cells that are present in tumors and adjacent non-neoplastic parenchyma. The protein tyrosine kinase inhibitor, imatinib (Gleevec), decreases the proliferation of non-parenchymal cells (NPC) in vitro and in vivo, with concomitant inhibition of Akt. In vivo treatment with imatinib also blocks the expression of CD34 in PDGF-C Tg mice. Decreased NPC proliferation and CD34 expression correlated with lower levels of active ERK1/2 and total levels of PDGF receptor alpha (PDGFRalpha). In summary, the small molecule inhibitor imatinib attenuates stromal cell proliferation in PDGF-C-induced HCC, which coincides with decreased expression of both CD34 and PDGFRalpha, and activated Akt. Our findings suggest that imatinib may be efficacious in the treatment of hepatocarcinogenesis, particularly when neovascularization is present.     

Regulator of G-Protein Signaling-5 Is a Marker of Hepatic Stellate Cells and Expression Mediates Response to Liver Injury

Liver fibrosis is mediated by hepatic stellate cells (HSCs), which respond to a variety of cytokine and growth factors to moderate the response to injury and create extracellular matrix at the site of injury. G-protein coupled receptor (GPCR)-mediated signaling, via endothelin-1 (ET-1) and angiotensin II (AngII), increases HSC contraction, migration and fibrogenesis. Regulator of G-protein signaling-5 (RGS5), an inhibitor of vasoactive GPCR agonists, functions to control GPCR-mediated contraction and hypertrophy in pericytes and smooth muscle cells (SMCs). Therefore we hypothesized that RGS5 controls GPCR signaling in activated HSCs in the context of liver injury. In this study, we localize RGS5 to the HSCs and demonstrate that Rgs5 expression is regulated during carbon tetrachloride (CCl₄)-induced acute and chronic liver injury in Rgs5^LacZ/LacZ reporter mice. Furthermore, CCl₄ treated RGS5-null mice develop increased hepatocyte damage and fibrosis in response to CCl₄ and have increased expression of markers of HSC activation. Knockdown of Rgs5 enhances ET-1-mediated signaling in HSCs in vitro. Taken together, we demonstrate that RGS5 is a critical regulator of GPCR signaling in HSCs and regulates HSC activation and fibrogenesis in liver injury.     

Activation of Akt Signaling Reduces the Prevalence and Intensity of Malaria Parasite Infection and Lifespan in Anopheles stephensi Mosquitoes

Malaria (Plasmodium spp.) kills nearly one million people annually and this number will likely increase as drug and insecticide resistance reduces the effectiveness of current control strategies. The most important human malaria parasite, Plasmodium falciparum, undergoes a complex developmental cycle in the mosquito that takes approximately two weeks and begins with the invasion of the mosquito midgut. Here, we demonstrate that increased Akt signaling in the mosquito midgut disrupts parasite development and concurrently reduces the duration that mosquitoes are infective to humans. Specifically, we found that increased Akt signaling in the midgut of heterozygous Anopheles stephensi reduced the number of infected mosquitoes by 60–99%. Of those mosquitoes that were infected, we observed a 75–99% reduction in parasite load. In homozygous mosquitoes with increased Akt signaling parasite infection was completely blocked. The increase in midgut-specific Akt signaling also led to an 18–20% reduction in the average mosquito lifespan. Thus, activation of Akt signaling reduced the number of infected mosquitoes, the number of malaria parasites per infected mosquito, and the duration of mosquito infectivity.     

Comparison of local measures of spike time irregularity and relating variability to firing rate in motor cortical neurons

Spike time irregularity can be measured by the coefficient of variation. However, it overestimates the irregularity in the case of pronounced firing rate changes. Several alternative measures that are local in time and therefore relatively rate-independent were proposed. Here we compared four such measures: CV₂, LV, IR and SI. First, we asked which measure is the most efficient for time-resolved analyses of experimental data. Analytical results show that CV₂ has the less variable estimates. Second, we derived useful properties of CV₂ for gamma processes. Third, we applied CV₂ on recordings from the motor cortex of a monkey performing a delayed motor task to characterize the irregularity, that can be modulated or not, and decoupled or not from firing rate. Neurons with a CV₂-rate decoupling have a rather constant CV₂ and discharge mainly irregularly. Neurons with a CV₂-rate coupling can modulate their CV₂ and explore a larger range of CV₂ values.     

Dynamical changes and temporal precision of synchronized spiking activity in monkey motor cortex during movement preparation.

Movement preparation is considered to be based on central processes which are responsible for improving motor performance. For instance, it has been shown that motor cortical neurones change their activity selectively in relation to prior information about movement parameters. However, it is not clear how groups of neurones dynamically organize their activity to cope with computational demands. The aim of the study was to compare the firing rate of multiple simultaneously recorded neurones with the interaction between them by describing not only the frequency of occurrence of epochs of significant synchronization, but also its modulation in time and its changes in temporal precision during an instructed delay. Multiple single-neurone activity was thus recorded in monkey motor cortex during the performance of two different delayed multi-directional pointing tasks. In order to detect conspicuous spike coincidences in simultaneously recorded spike trains by tolerating temporal jitter ranging from 0 to 20 ms and to calculate their statistical significance, a modified method of the 'Unitary Events' analysis was used. Two main results were obtained. First, simultaneously recorded neurones synchronize their spiking activity in a highly dynamic way. Synchronization becomes significant only during short periods (about 100 to 200 ms). Several such periods occurred during a behavioural trial more or less regularly. Second, in many pairs of neurones, the temporal precision of synchronous activity was highest at the end of the preparatory period. As a matter of fact, at the beginning of this period, after the presentation of the preparatory signal, neurones significantly synchronize their spiking activity, but with low temporal precision. As time advances, significant synchronization becomes more precise. Data indicate that not only the discharge rate is involved in preparatory processes, but also temporal aspects of neuronal activity as expressed in the precise synchronization of individual action potentials.