Assumption 2: opaque to intuition?

Aim The aim of this paper was to revise the historical biogeographical method for resolving complicated distribution patterns through a technique that has come to be called assumption 2. Assumption 2 was used to resolve multiple areas on a single terminal branch (masts) as well as paralogous and missing areas in two or more areagrams. Recent examples, however, have shown that assumption 2 may be using rather than resolving paralogy. The paper attempts to resolve this problem by formulating a separate procedure to avoid using paralogous (redundant) area data in area cladistic analyses. Method The revision results in a new derivative method, the transparent method, to replace assumptions 1 and 2. It separates the procedures for resolving paralogy and for solving distribution patterns that occur in more than one area (masts). Results Several hypothetical examples show how the transparent method reduces paralogy and masts. The results show that paralogy can be reduced if the paralogy subtree method is applied after uncovering all possible relationships as single components on the terminals of areagrams. Conclusion The transparent method is a significant step forward in cladistic biogeography as it utilizes area relationships rather than generating general areagrams based on paralogous data.     

NSAIDs and scavenging birds: potential impacts beyond Asia's critically endangered vultures

Veterinary treatment of livestock with diclofenac, a non-steroidal anti-inflammatory drug (NSAID), has caused catastrophic declines of Gyps vultures in Asia. This has highlighted a lack of knowledge on the potential impacts of NSAIDs on scavenging birds. Surveys of veterinarians and zoos document the outcomes of the treatment of over 870 scavenging birds from 79 species. As well as diclofenac, carprofen and flunixin were associated with mortality, with deaths observed in 13 and 30% of cases, respectively. Mortality was also found following treatment with ibuprofen and phenylbutazone. NSAID toxicity was reported for raptors, storks, cranes and owls, suggesting that the potential conservation impact of NSAIDs may extend beyond Gyps vultures and could be significant for New World vultures. In contrast, there were no reported mortalities for the NSAID meloxicam, which was administered to over 700 birds from 60 species. The relative safety of meloxicam supports other studies indicating the suitability of this NSAID to replace diclofenac in Asia.     

The ecology of Wood mice (Apodemus sylvaticus) on arable farmland

The ecology of Wood mice ( Apodemus sylvaticus ) was studied by live trapping and by examining the stomach contents of killed animals on an arable farm in West Suffolk. The study area included several fields but only a short length of hedgerow and was distant from other hedges and woods. Wood mice were trapped in the open fields throughout the year and their burrows were also found there. Population densities were comparable with those reported from deciduous woodland and seasonal population changes, ranging behaviour and timing of the breeding season were also broadly similar. The survival rate of juvenile mice varied greatly within and between breeding seasons tending to improve when young of the year replaced overwintered animals in the adult breeding population. Wood mice showed no marked preference for fields with different crops in winter when the main foods were grain, waste sugar beet roots, weed seeds and soil invertebrates. In spring and early summer they preferred winter wheat fields where seeding weeds provided most of their food.     

BREEDING BEHAVIOUR OF OSPREYS PANDION HALIAETUS IN SCOTLAND

Ospreys Pandion haliaetus nested at a site near Loch Garten, Inverness-shire continuously from 1959 to 1973. Each year the Royal Society for the Protection of Birds has organized a continuous watch on the eyrie in the breeding season. The detailed records kept of the activities of Ospreys at the nest by those participating in the watch were analysed and the results presented here. Ospreys are migratory and arrived in the breeding area in early April. Nesting material was usually added to an existing eyrie platform. The male collected more material than the female. The female lined the nest cup. The extent of nest building activity and the frequencies of mating and other activities prior to laying varied markedly from year to year. These differences may have been related to changes in the identity of the nesting female, but the birds were not individually marked. Both sexes incubated but the female took the greater share and normally incubated at night. When the young hatched they were brooded by the female. The female stayed in the vicinity of the nest for most of the time until the young fledged at about 53 days old. The male Osprey caught almost all the fish eaten by his mate and young during the breeding season. The number of fish caught per day increased markedly after the young hatched. Pike Esox lucius and Trout Salmo trutta were the main species taken, and some Rainbow Trout Salmo gairdnerii were identified. There were seasonal and diurnal changes in the size and the species composition of the catch. The effects of weather conditions on hunting are examined. The occurrence of Ospreys other than the resident birds at the nest site is described. The behaviour of another pair of Ospreys which repeatedly failed to hatch eggs is described. There was an instance of egg eating in this pair, and some differences in behaviour were found between these birds and those at Loch Garten whose breeding success was good. The breeding biology of Ospreys is compared with that of other British diurnal birds of prey. In other species the female leaves the young unguarded at some stage in the nestling period and hunts food for them, whereas female Ospreys do not usually hunt in the nesting period.     

Myosin VI: cellular functions and motor properties

Myosin VI has been localized in membrane ruffles at the leading edge of cells, at the trans-Golgi network compartment of the Golgi complex and in clathrin-coated pits or vesicles, indicating that it functions in a wide variety of intracellular processes. Myosin VI moves along actin filaments towards their minus end, which is the opposite direction to all of the other myosins so far studied (to our knowledge), and is therefore thought to have unique properties and functions. To investigate the cellular roles of myosin VI, we identified various myosin VI binding partners and are currently characterizing their interactions within the cell. As an alternative approach, we have expressed and purified full-length myosin VI and studied its in vitro properties. Previous studies assumed that myosin VI was a dimer, but our biochemical, biophysical and electron microscopic studies reveal that myosin VI can exist as a stable monomer. We observed, using an optical tweezers force transducer, that monomeric myosin VI is a non-processive motor which, despite a relatively short lever arm, generates a large working stroke of 18 nm. Whether monomer and/or dimer forms of myosin VI exist in cells and their possible functions will be discussed.     

Microfabricated Modular Scale-Down Device for Regenerative Medicine Process Development

The capacity of milli and micro litre bioreactors to accelerate process development has been successfully demonstrated in traditional biotechnology. However, for regenerative medicine present smaller scale culture methods cannot cope with the wide range of processing variables that need to be evaluated. Existing microfabricated culture devices, which could test different culture variables with a minimum amount of resources (e.g. expensive culture medium), are typically not designed with process development in mind. We present a novel, autoclavable, and microfabricated scale-down device designed for regenerative medicine process development. The microfabricated device contains a re-sealable culture chamber that facilitates use of standard culture protocols, creating a link with traditional small-scale culture devices for validation and scale-up studies. Further, the modular design can easily accommodate investigation of different culture substrate/extra-cellular matrix combinations. Inactivated mouse embryonic fibroblasts (iMEF) and human embryonic stem cell (hESC) colonies were successfully seeded on gelatine-coated tissue culture polystyrene (TC-PS) using standard static seeding protocols. The microfluidic chip included in the device offers precise and accurate control over the culture medium flow rate and resulting shear stresses in the device. Cells were cultured for two days with media perfused at 300 µl.h⁻¹ resulting in a modelled shear stress of 1.1×10⁻⁴ Pa. Following perfusion, hESC colonies stained positively for different pluripotency markers and retained an undifferentiated morphology. An image processing algorithm was developed which permits quantification of co-cultured colony-forming cells from phase contrast microscope images. hESC colony sizes were quantified against the background of the feeder cells (iMEF) in less than 45 seconds for high-resolution images, which will permit real-time monitoring of culture progress in future experiments. The presented device is a first step to harness the advantages of microfluidics for regenerative medicine process development.     

Two-Dimensionality of Yeast Colony Expansion Accompanied by Pattern Formation

Yeasts can form multicellular patterns as they expand on agar plates, a phenotype that requires a functional copy of the FLO11 gene. Although the biochemical and molecular requirements for such patterns have been examined, the mechanisms underlying their formation are not entirely clear. Here we develop quantitative methods to accurately characterize the size, shape, and surface patterns of yeast colonies for various combinations of agar and sugar concentrations. We combine these measurements with mathematical and physical models and find that FLO11 gene constrains cells to grow near the agar surface, causing the formation of larger and more irregular colonies that undergo hierarchical wrinkling. Head-to-head competition assays on agar plates indicate that two-dimensional constraint on the expansion of FLO11 wild type (FLO11) cells confers a fitness advantage over FLO11 knockout (flo11Δ) cells on the agar surface.     

The increase in the Corncrake Crex crex population of the United Kingdom has slowed

Capsule The UK Corncrake population increase has slowed, but has rapidly recovered from a large decline in 2013.

Aims To provide an update on the population size and distribution of breeding Corncrakes in the UK, including the results of the most recent full national survey and annual monitoring of the core population.

Methods A full survey of singing Corncrakes was undertaken in the UK and the Isle of Man in 2009, following the last full censuses in 1978/79, 1988, 1993, 1998 and 2003. Monitoring of singing male Corncrakes within the core range in northern and western Scotland has been undertaken annually since 1993.

Results The 2009 results show that numbers increased substantially since 2003, from 829 to 1166 singing males. Corncrake numbers in the core range have increased in 17 of the 21 years between 1993 and 2014, and peaked at 1274 singing males, in 2014. Numbers of singing males dropped by 24% between 2012 and 2013, probably due to a particularly cold spring in 2013 that inhibited growth of vegetation cover, but numbers recovered markedly in 2014.

Conclusion The recovery of the UK Corncrake population has continued since a low point in 1993. However there are no signs of range expansion into mainland UK, away from the core breeding areas in Scotland. The large decline in the core population between 2012 and 2013 highlights the sensitivity of the population to external factors, although the subsequent increase in 2014 shows a capacity for rapid recovery.