A farm-scale investigation of the organic matter composition and soil chemistry of Andisols as influenced by land use and management

Andisols are characterised by having abundant reactive Al in the form of short-range ordered (SRO) Al constituents and organo-Al complexes, which facilitates the accumulation of soil organic matter (OM). However, recent studies of New Zealand pastoral systems have reported loss of carbon (C) from Andisols when under intense management. This study compares the organic and inorganic chemistry of Andisols on two adjacent pasture sites under different pastoral management regimes (Paddock 2 being more intensively managed than Paddock 1), as well as under a nearby pine stand (Forest). Mean soil pH-H₂O in Forest (5.3) was significantly lower (P?<?0.05) than that in Paddock 1 (5.7), which itself was significantly lower (P?<?0.05) than in Paddock 2 (6.1). Soil C concentrations were significantly higher (P?<?0.05) in the soils under pasture than under pine (63.8 g C/kg), and C in Paddock 1 (98.1 g C/kg) was significantly higher (P?<?0.05) than in Paddock 2 (84.1 g C/kg). The ratio of Al in organo-Al complexes (as estimated with sodium pyrophosphate) to the sum of Al in both SRO and organo-Al complexes (Al_p/Al_o) was significantly smaller (P?<?0.05) as the alkalinity of the soils increased (0.38, 0.23, 0.16 for Forest, Paddock 1 and Paddock 2, respectively). At the molecular level, soils under Forest had a larger relative contribution of degraded products of plant polysaccharides than those under pasture, while these had a larger contribution of fresh (e.g. cellulose and cutan/suberan aliphatic structures) and N-rich OM (e.g., microbial fingerprints, denoting a high microbial activity). Dissolved organic C content in the rhizosphere of pasture species was similar between paddocks, but Paddock 2 had a significantly (P?<?0.05) greater contribution of organic acids of MW?<?500 Da and higher pH (6.8 vs. 6.2). The results (1) confirm the common enrichment in organic C of New Zealand top soils under pasture compared to those under pine, and (2) reveal that the changes in the soil chemistry associated with pasture management may weaken the ability of these soils to preserve OM.     

The mycoestrogen zearalenone in Portuguese flowing waters and its potential environmental impact

This study provides the first environmental risk assessment (ERA) for zearalenone (ZEN), the only known mycoestrogen, based on a broad-scale investigation on its occurrence in rivers and creeks from Portugal. Water sample filtration and immunoaffinity columns (IAC) clean-up followed by liquid chromatograph with tandem mass spectrometry (LC/MS ⁿ ) provided an analytical method with good analytical performance. ZEN levels were determined for seven Portuguese rivers and one creek, during two different seasons, in a total of 38 samples collected upstream wastewater treatment plants (WWTPs). Overall, 23.7% were contaminated with ZEN at levels ranging between 5.6 and 82.6 ng/L. The highest concentration was observed during spring, although no statistically significant differences were observed between spring and autumn sampling campaigns. The potential ecotoxicological risk from ZEN to different trophic levels of aquatic organisms was evaluated by means of risk quotients (RQs) calculation. Although all the RQs obtained were lower than 1, our results confirm that ZEN is a relatively frequent contaminant in flowing waters in Portugal and might contribute to the overall estrogenic activity in the environment.     

Synthesizing the role of epigenetics in the response and adaptation of species to climate change in freshwater ecosystems

Freshwater ecosystems are amongst the most threatened ecosystems on Earth. Currently, climate change is one of the most important drivers of freshwater transformation and its effects include changes in the composition, biodiversity and functioning of freshwater ecosystems. Understanding the capacity of freshwater species to tolerate the environmental fluctuations induced by climate change is critical to the development of effective conservation strategies. In the last few years, epigenetic mechanisms were increasingly put forward in this context because of their pivotal role in gene–environment interactions. In addition, the evolutionary role of epigenetically inherited phenotypes is a relatively recent but promising field. Here, we examine and synthesize the impacts of climate change on freshwater ecosystems, exploring the potential role of epigenetic mechanisms in both short‐ and long‐term adaptation of species. Following this wrapping‐up of current evidence, we particularly focused on bringing together the most promising future research avenues towards a better understanding of the effects of climate change on freshwater biodiversity, specifically highlighting potential molecular targets and the most suitable freshwater species for future epigenetic studies in this context.     

Eating down the food chain: generalism is not an evolutionary dead end for herbivores

The role of trophic specialisation in taxonomic diversification remains unclear. Plant specialists diversify faster than omnivores and animalivores, but at shorter macroevolutionary scales this pattern sometimes reverses. Here, we estimate the effect of diet diversification on speciation rates in noctilionoid bats, controlling for tree shape, rate heterogeneity and macroevolutionary regimes. We hypothesise that niche subdivision among herbivores positively relates to speciation rates, differing between macroevolutionary regimes. We found the rate at which new herbivorous lineages originate decreases as rates of diet evolution increase. Herbivores experience higher speciation rates, but generalist herbivores and predominantly herbivorous omnivores speciate faster than specialised herbivores, omnivores and animalivores. Generalised herbivory is not a dead end. We show that analysing ecological traits and diversification requires accounting for macroevolutionary regimes and within‐ and between‐clade variation in evolutionary rates. Our approach overcomes the high false‐positive rates of other methods and illuminates the roles of herbivory and specialisation in speciation.     

A Fluorescence‐Based Sensor Assay that Monitors General Protein Aggregation in Human Cells

Protein conformational disorders are characterized by disruption of protein folding and toxic accumulation of protein aggregates. Here we describe a sensitive and simple method to follow and monitor general protein aggregation in human cells. Heat shock protein 27 (HSP27) is an oligomeric small heat shock protein that binds and keeps unfolded proteins in a folding competent state. This high specificity of HSP27 for aggregated proteins can be explored to monitor aggregation in living cells by fusing it to a fluorescent protein as Green Fluorescent Protein (GFP). We have constructed a HeLa stable cell line expressing a HSP27:GFP chimeric reporter protein and after validation, this stable cell line is exposed to different agents that interfere with proteostasis, namely Arsenite, MG132, and Aβ‐peptide. Exposure to proteome destabilizers lead to re‐localization of HSP27:GFP fluorescence to foci, confirming that our reporter system is functional and can be used to detect and follow protein aggregation in living cells. This reporter is a valuable tool to setup wide‐genetic screens to identify genes and pathways involved in protein misfolding and aggregation.     

Improvement of Biomethane Production from Sewage Sludge in Co-digestion with Glycerol and Waste Frying Oil,Using a Design of Experiments

A central composite design circumscribed method was used to define the experimental conditions that improve the methane production rate (k_CH4, liters of methane per kilogram of VS of waste added and per day) and the cumulative methane production (cMP, liters of methane per kilogram of VS of waste added) of the co-digestion of sewage sludge (SS) with crude glycerol (cGly) and waste frying oil (WFO). Three factors were selected, i.e., SS concentration, global co-substrate concentration, and mass fraction of cGly (x_cGly) in a mixture of cGly and WFO (in chemical oxygen demand, COD). SS digestion without co-substrate reached a cMP of (294?±?6) L·kg^?1 and a k_CH4 of (64?±?1) L·kg^?1·d^?1, at standard temperature and pressure conditions and expressed relatively to the initial volatile solids. After statistical analysis, SS and co-substrate concentrations of 4.6 g·L^?1 and 8.8 g·L^?1 (in COD), respectively, with x_cGly of 0.8, were defined to simultaneously boost cMP (91 % more) and k_CH4 (3-fold increase). Application of these conditions would yield 214 MWh more in electricity per 1000 m³ of SS digested.     

An affordable apparatus for fine‐controlled emulation of buzzing frequencies of bees for the testing hypothesis in buzz interactions

The buzzing foraging behavior of female bees for pollen harvesting called the attention of early pollination biologists. Flower types that demand this buzzing behavior comprise about 20,000 species of different and phylogenetically unrelated plant taxa, suggesting that it had independently evolved many times among the flowering plants. Between the late 1970s and early 1980s, theoretical papers had modeled the energetics of buzz pollination, but, up to this moment, no hypothesis was experimentally tested concerning the theoretical basis of the energetics of buzz pollination. We present a cost‐effective and simple apparatus, including a digital and highly accurate frequency generator, and a device for the transference of buzz‐frequency energy to the receptive floral unity. The receptive floral unities may comprise the entire or partial androecium, or the tubular corolla, or, in some cases, the whole flower. This apparatus can be easily used in both laboratory and field conditions of research, as natural air currents are avoided, and the response of pollen liberation can be quantitatively measured by pollen grain counts that can be captured by adhesion in slide poured with an isosmotic lactate–glycerol media. The maximum displacement of the hardwire beam/claw system was 0.1170 ± 0.0006 mm @ 150 Hz; 0.021 ± 0.003 mm @ 250 Hz; 0.010 ± 0.001 mm @ 350 Hz; 0.0058 ± 0.0001 mm @ 450 Hz; and 0.0082 ± 0.0005 mm @ 550 Hz. Hypothesis contrasting frequency emission and pollen liberation measured as pollen grain counts may be tested in a species flower type by simple linear regression if pollen counts are normally distributed, or ordinal logistic regression, with non‐normal counts. The comparison among different flower‐type requirements can be tested through appropriate statistical methods for both normally and non‐normally distributed pollen grain counts.     

Growth at elevated CO2 leads to down-regulation of photosynthesis and altered response to high temperature in Quercus suber L. seedlings

The effects of growth at elevated CO₂ on the response to hightemperatures in terms of carbon assimilation (net photosynthesis,stomatal conductance, amount and activity of Rubisco, and concentrationsof total soluble sugars and starch) and of photochemistry (forexample, the efficiency of excitation energy captured by openphotosystem II reaction centres) were studied in cork oak (Quercussuber L.). Plants grown in elevated CO₂ (700 ppm) showed a down-regulationof photosynthesis and had lower amounts and activity of Rubiscothan plants grown at ambient CO₂ (350 ppm), after 14 monthsin the greenhouse. At that time plants were subjected to a heat-shocktreatment (4 h at 45C in a chamber with 80% relative humidityand 800–1000 mol m^–2 s^–1 photon flux density).Growth in a CO₂-enriched atmosphere seems to protect cork oakleaves from the short-term effects of high temperature. ElevatedCO₂ plants had positive net carbon uptake rates during the heatshock treatment whereas plants grown at ambient CO₂ showed negativerates. Moreover, recovery was faster in high CO₂-grown plantswhich, after 30 min at 25C, exhibited higher net carbon uptakerates and lower decreases in photosynthetic capacity (A_max aswell as in the efficiency of excitation energy captured by openphotosystem II reaction centres (F_vJF_m than plants grown atambient CO₂. The stomata of elevated CO₂ plants were also lessresponsive when exposed to high temperature. Key words: Elevated CO₂, temperature, acclimation, photosynthesis, Quercus suber L.     

Accessory human cytomegalovirus glycoprotein US9 in the unique short component of the viral genome promotes cell-to-cell transmission of virus in polarized epithelial cells.

Human cytomegalovirus (CMV) encodes accessory glycoproteins that are dispensable for virus growth in nonpolarized cells in culture. We report that CMV deletion mutants lacking the gene for accessory glycoprotein US9 in the unique short component of the viral genome are impaired in plaque formation in polarized human retinal pigment epithelial (ARPE-19) cells. Comparison of CMV deletion mutants in US9 with herpes simplex virus type 1 deletion mutants lacking glycoproteins gE and gI showed that both of these mutants are impaired in altering junctional complexes and increasing paracellular permeability in polarized ARPE-19 cells cultured on permeable filter supports. Results of functional studies indicate that CMV US9 and homologs of gE have analogous roles in promoting virus spread across lateral membranes of polarized epithelial cells.