Apiose and mono-O-methyl sugars as minor constituents of the leaves of deciduous trees and various other species

1. Leaves of a number of species were hydrolysed with aqueous sulphuric acid and the resulting mixtures of sugars were fractionated by chromatography on activated charcoal. Paper chromatography of the fractions showed the presence in all the hydrolysates of minor constituents with R(F) values similar to or greater than those of the common hexoses and pentoses. 2. Two of these were identified as 2-O-methylxylose and 2-O-methylfucose. Estimates of the amounts present in whole leaves, and in fractions prepared from them, showed that they were associated with the hemicelluloses. 3. A third constituent was identified, by the formation of its di-isopropylidene derivative, as apiose. It also was associated chiefly with the hemicellulose fraction; none could be found in aqueous extracts from leaves of Tilia vulgaris, nor in aqueous extracts of Zostera marina, in which apiose is a major constituent of the water-insoluble polysaccharide. 4. A further constituent, after further purification by preparative paper chromatography, was tentatively identified, by gas-liquid chromatography of derivatives, as 3-O-methylgalactose, and was probably accompanied by small amounts of 4-O-methylgalactose. 5. These observations confirm the widespread occurrence of 2-O-methylxylose, 2-O-methylfucose and apiose, but 3-O-methylgalactose was hitherto known only in slippery-elm mucilage, and 4-O-methylgalactose in soil polysaccharides. Some experiments on the digestion of leaf hemicellulose fractions by snail crop-juice suggested that the mono-O-methyl sugars might confer resistance to enzymic degradation.     

Analysis and separation of residues important for the chemoattractant and antimicrobial activities of beta-defensin 3

beta-Defensins are important in mammalian immunity displaying both antimicrobial and chemoattractant activities. Three canonical disulfide intramolecular bonds are believed to be dispensable for antimicrobial activity but essential for chemoattractant ability. However, here we show that HBD3 (human beta-defensin 3) alkylated with iodoactemide and devoid of any disulfide bonds is still a potent chemoattractant. Furthermore, when the canonical six cysteine residues are replaced with alanine, the peptide is no longer active as a chemoattractant. These findings are replicated by the murine ortholog Defb14. We restore the chemoattractant activity of Defb14 and HBD3 by introduction of a single cysteine in the fifth position (Cys V) of the beta-defensin six cysteine motif. In contrast, a peptide with a single cysteine at the first position (Cys I) is inactive. Moreover, a range of overlapping linear fragments of Defb14 do not act as chemoattractants, suggesting that the chemotactic activity of this peptide is not dependent solely on an epitope surrounding Cys V. Full-length peptides either with alkylated cysteine residues or with cysteine residues replaced with alanine are still strongly antimicrobial. Defb14 peptide fragments were also tested for antimicrobial activity, and peptides derived from the N-terminal region display potent antimicrobial activity. Thus, the chemoattractant and antimicrobial activities of beta-defensins can be separated, and both of these functions are independent of intramolecular disulfide bonds. These findings are important for further understanding of the mechanism of action of defensins and for therapeutic design.     

An in situ study of photosynthetic oxygen exchange and electron transport rate in the marine macroalga Ulva lactuca (Chlorophyta)

Direct comparisons between photosynthetic O₂ evolution rate and electron transport rate (ETR) were made in situ over 24 h using the benthic macroalga Ulva lactuca (Chlorophyta), growing and measured at a depth of 1.8 m, where the midday irradiance rose to 400–600 μmol photons m⁻² s⁻¹. O₂ exchange was measured with a 5-chamber data-logging apparatus and ETR with a submersible pulse amplitude modulated (PAM) fluorometer (Diving-PAM). Steady-state quantum yield ((F_m′−F_t)/F_m′) decreased from 0.7 during the morning to 0.45 at midday, followed by some recovery in the late afternoon. At low to medium irradiances (0–300 μmol photons m⁻² s⁻¹), there was a significant correlation between O₂ evolution and ETR, but at higher irradiances, ETR continued to increase steadily, while O₂ evolution tended towards an asymptote. However at high irradiance levels (600–1200 μmol photons m⁻² s⁻¹) ETR was significantly lowered. Two methods of measuring ETR, based on either diel ambient light levels and fluorescence yields or rapid light curves, gave similar results at low to moderate irradiance levels. Nutrient enrichment (increases in [NO₃ ⁻], [NH₄ ⁺] and [HPO₄ ^2-] of 5- to 15-fold over ambient concentrations) resulted in an increase, within hours, in photosynthetic rates measured by both ETR and O₂ evolution techniques. At low irradiances, approximately 6.5 to 8.2 electrons passed through PS II during the evolution of one molecule of O₂, i.e., up to twice the theoretical minimum number of four. However, in nutrient-enriched treatments this ratio dropped to 5.1. The results indicate that PAM fluorescence can be used as a good indication of the photosynthetic rate only at low to medium irradiances. This revised version was published online in June 2006 with corrections to the Cover Date.     

Organic matter contributed to soil by plant roots during the growth and decomposition of maize

Maize (Zea mays var. Caldera) plants were grown under sterile and not sterile conditions in soil in an atmosphere continuously enriched with ¹⁴CO₂ for 36 days. At harvest the above ground parts of the maize were cut off and the roots were separated from the soil by washing with water. The soil was dispersed using ultrasonics and separated into soluble clay silt and sand fraction. Roots were included in the coarse sand fraction. 25% of the total label present in the soil 5.5% of that in the soil-plant system, was water soluble. Very little label was present in the clay and silt fractions (5% in each) and most (65%) was in the sand fraction as root material.Rapid extraction of soil after the removal of roots without ultrasonic treatment released soluble matter which amounted to <0.5% of the total activity in the soil-plant system.Isolated roots steeped in water released about 18% of their activity. Much of the soluble fraction may therefore be root lysate.The soil and roots accounted for 22% of the total activity in the soil-plant system. Glucose accounted for 89% of the sugars in the soluble fraction of the soil.78% or more of the ¹⁴C present in glucose, arabinose and xylose constituents of the root-soil mixture occurred in the coarse and fine sand fractions, which also included root material. For mannose and galactose the value was 70% and for rhamnose, 50%.After reinoculation of the soil-root mixture and decomposition for 56 weeks, the water soluble material obtained on fractionation of the soil decreased to less than 1% of the total activity. A much greater proportion, 25%, was present in the clay fraction as a result of decomposition.     

The Surname Space of the Czech Republic: Examining Population Structure by Network Analysis of Spatial Co-Occurrence of Surnames

In the majority of countries, surnames represent a ubiquitous cultural attribute inherited from an individual''s ancestors and predominantly only altered through marriage. This paper utilises an innovative method, taken from economics, to offer unprecedented insights into the “surname space” of the Czech Republic. We construct this space as a network based on the pairwise probabilities of co-occurrence of surnames and find that the network representation has clear parallels with various ethno-cultural boundaries in the country. Our inductive approach therefore formalizes a simple assumption that the more frequently the bearers of two surnames concentrate in the same locations the higher the probability that these two surnames can be related (considering ethno-cultural relatedness, common co-ancestry or genetic relatedness, or some other type of relatedness). Using the Czech Republic as a case study this paper offers a fresh perspective on surnames as a quantitative data source and provides a methodology that can be easily incorporated within wider cultural, ethnic, geographic and population genetics studies already utilizing surnames.     

Fluid structure interaction of patient specific abdominal aortic aneurysms: a comparison with solid stress models

Background  

Abdominal aortic aneurysm (AAA) is a dilatation of the aortic wall, which can rupture, if left untreated. Previous work has shown that, maximum diameter is not a reliable determinant of AAA rupture. However, it is currently the most widely accepted indicator. Wall stress may be a better indicator and promising patient specific results from structural models using static pressure, have been published. Since flow and pressure inside AAA are non-uniform, the dynamic interaction between the pulsatile flow and wall may influence the predicted wall stress. The purpose of the present study was to compare static and dynamic wall stress analysis of patient specific AAAs.     

Test of an antifouling treatment on tuna fish-cages in Boston Bay, Port Lincoln, South Australia

A test of the antifouling properties of Wattyl NetClear was conducted on fish farms containing southern bluefin tuna (Thunnus maccoyii) during a 6-month period (February-July 2002). Wattyl NetClear is a water-based synthetic latex-based coating where the active antifouling agent is a mixture of two isothiazolinones likely to affect both biochemical conditioning and bacterial colonisation. The development of fouling was monitored using underwater stereo-photogrammetry on 3 treated and 3 untreated net cages with the main factors treatment, depth and cage nested within treatment. A significant treatment and depth effect was found but variable through time and in some instances with significant cage effects. By the end of the study, the difference in fouling load between treated and untreated nets was 14.7%. In total 72% of all free-space data points were on treated nets. The dominating fouling organisms were Enteromorpha sp. and sponges with low settlement of blue mussel and paper oysters. Passive deposition of tuna faeces contributed significantly to the cover. The largest cover of fouling was observed in April-May with a dominance of sponges in June-July. Enteromorpha sp. dominated shallow depths while sponges dominated at deeper levels. Tuna faeces were distributed independent of depth but varied with time. The results showed that fouling of fish cages consisted of both active settlement and passive deposition, the latter independent on antifouling treatment.     

Translocation and plant availability of radio caesium in an organic soil

¹³⁴Caesium chloride solution was injected into the surface of a peaty podzol at 3 cm depth with 5 cm spacing over a M² at two upland sites, one of which had been fertilized and reseeded. The movement of radio caesium in the soil was subsequently followed by coring and/or taking out 10-cm square blocks at monthly intervals over a period of 2 years. There was very little movement of the caesium down the profile, with more than 95% remaining at the point of application. Lateral movement was also minimal. The caesium did not concentrate in the roots. Samples of herbage collected from the surface during the growing season showed a progressively decreasing concentration of caesium over the period. Total caesium removed in herbage amounted to 3.5 and 0.6% of the original present for the improved and umimproved soils, respectively.The extractability of the caesium from the ¹³⁴Cs-amended peaty soil was compared with that from a low-ash peat which had been treated with the radionuclide for 2 months. Initially 1 M ammonium acetate (pH 7.2) extracted 30 and 56% of the Cs from 0–3 and 3–6 horizous of the improved peaty podzol, respectively. After 5 months only about 12 and 7% of the Cs was extracted by 1 M ammonium acetate and 4 and 1% by 0.1 M sodium pyrophosphate from the 0–3 and 3–6 cm horizons, respectively. After 24 months 1 M ammonium acetate extracted 1.6 and 3.3% of the Cs from the 0–3 and 3–6 cm horizons, respectively. In contrast, the values for the peat after 2 months were 100 and 80% for 1 M ammonium acetate and 0.1 M pyrophosphate, respectively.     

Accounting for multiple ecosystem services in a simulation of land‐use decisions: Does it reduce tropical deforestation?

Conversion of tropical forests is among the primary causes of global environmental change. The loss of their important environmental services has prompted calls to integrate ecosystem services (ES) in addition to socio‐economic objectives in decision‐making. To test the effect of accounting for both ES and socio‐economic objectives in land‐use decisions, we develop a new dynamic approach to model deforestation scenarios for tropical mountain forests. We integrate multi‐objective optimization of land allocation with an innovative approach to consider uncertainty spaces for each objective. These uncertainty spaces account for potential variability among decision‐makers, who may have different expectations about the future. When optimizing only socio‐economic objectives, the model continues the past trend in deforestation (1975–2015) in the projected land‐use allocation (2015–2070). Based on indicators for biomass production, carbon storage, climate and water regulation, and soil quality, we show that considering multiple ES in addition to the socio‐economic objectives has heterogeneous effects on land‐use allocation. It saves some natural forest if the natural forest share is below 38%, and can stop deforestation once the natural forest share drops below 10%. For landscapes with high shares of forest (38%–80% in our study), accounting for multiple ES under high uncertainty of their indicators may, however, accelerate deforestation. For such multifunctional landscapes, two main effects prevail: (a) accelerated expansion of diversified non‐natural areas to elevate the levels of the indicators and (b) increased landscape diversification to maintain multiple ES, reducing the proportion of natural forest. Only when accounting for vascular plant species richness as an explicit objective in the optimization, deforestation was consistently reduced. Aiming for multifunctional landscapes may therefore conflict with the aim of reducing deforestation, which we can quantify here for the first time. Our findings are relevant for identifying types of landscapes where this conflict may arise and to better align respective policies.